1W27A

Phenylalanine ammonia-lyase (pal) from petroselinum crispum
Total Genus 254
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
254
sequence length
690
structure length
689
Chain Sequence
EDPLYWGIAAEAMTGSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVELSEAARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGSDNTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNQNITPCLPLRGTITDLVPLSYIAGLLTGRPNSKAVGPTGVILSPEEAFKLAGVEGGFFELQPKEGLALVNGTAVGSGMASMVLFEANILAVLAEVMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRSSTKMIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTSEAVEILKLMSTTFLVGLCQAIDLRHLEENLKSTVKNTVSSVAKRVLTMGVNGELHPSRFCEKDLLRVVDREYIFAYIDDPCSATYPLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDELKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLTGEKVTSPGEEFEKVFIAMSKGEIIDPLLECLESWNGAPLPIC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
molecule keywords PHENYLALANINE AMMONIA-LYASE 1
publication title Structural Basis for the Entrance Into the Phenylpropanoid Metabolism Catalyzed by Phenylalanine Ammonia-Lyase
pubmed doi rcsb
source organism Petroselinum crispum
total genus 254
structure length 689
sequence length 690
chains with identical sequence B
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2004-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.20 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Phenylalanine ammonia-lyase 1; domain 3 1w27A03
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1w27A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1w27A02
1JSWA 2O78A 3KDZA 3R6VA 1K62A 3GZHA 3OCFA 3BHGA 3UNVA 4NLEA 1DCNA 4FFXA 5F92A 4C5SA 4EEIA 3TV2A 1FURA 1TJUA 1Y2MA 2O7DA 5EYVA 1GK2A 3CZOA 1KQ7A 5D6BA 4C5RA 2O7FA 4C6GA 5F91A 2HVGA 1GK3A 1Q5NA 3OCEA 2QVEA 2QGAB 4APBA 4V2QA 1HY0A 4HGVA 3C8TA 4BAAA 4MX2A 4V2RA 3RRPA 4EFCA 1FUQA 2E9FA 2PTSA 2O7BA 1T6PA 1W27A 1YISA 2OHYA 2O6YA 1HY1A 2FUSA 3GTDA 4FLCA 3KDYA 2RJRA 1C3CA 2J91A 1YFEA 2PTRA 4BABA 1RE5A 2X75A 1J3UA 3RD8A 1GKMA 2NYNA 1VDKA 3E04A 1DOFA 1GKJA 1K7WA 2PTQA 1T6JA 1C3UA 4APAA 1FUPA 5EYTA 1YFMA 3QBPA 1TJWA 2O7EA 4ADLA 2RJSA 3NZ4A 1AUWA 5HW2A 3NO9A 4ADMA 4NSLA 2PFMA 2NYFA 1U16A 4CQ5A 1U15A 1TJVA 4C5UA 1B8FA 1EB4A 1TJ7A 1FUOA 3R6QA 1I0AA 2VD6A 1XWOA 3R6YA 2YIIA
chains in the Genus database with same CATH superfamily
3GTLA 3R6YA 1I3QA 1JSWA 1R9TA 2O78A 2A69D 2EZCA 3GTMA 2R7ZA 3KDZA 1K62A 3GZHA 3R6VA 3OCFA 1ZYRD 3BHGA 4NLEA 3UNVA 1DCNA 5M0JA 2N3EA 4FFXA 1SMYD 2VK9A 3GTOA 1ZYMA 3H0GA 5F92A 2VSFA 2LYIA 4C5SA 4EEIA 3TV2A 3GTJA 2X0QA 2MX8A 1FURA 2JA5A 1TJUA 2FELA 1Y2MA 2O7DA 5EYVA 1GK2A 4A15A 3CZOA 1KQ7A 1WCMA 1EZAA 2K3QA 5D6BA 4C5RA 3CQZA 4CEJA 5H8WA 1I6VD 2O7FA 2LTHA 4C6GA 5F91A 3LRDA 4CEIA 3GTPA 2HVGA 2EZBA 2MQAA 1IW7D 3FKIA 1GK3A 2A68D 1Q5NA 2A6ED 2F5JA 2X0PA 2A6HD 3OCEA 2QVEA 1XL7A 2QGAB 3U44A 1EZBA 2HROA 4APBA 1XLYA 4V2QA 3EZEA 1HY0A 4CEHA 4HGVA 1HQMD 2VL7A 1XL8A 3C8TA 2R92A 4BAAA 4MX2A 4V2RA 3RRPA 4EFCA 1FUQA 2N1DB 4C2MA 2FIOA 3GTQA 2E9FA 2PTSA 2O7BA 2B63A 1T6PA 2O5JD 1W27A 2JA6A 1YISA 5M0IA 1TWFA 2OHYA 2O6YA 1HY1A 2FUSA 3EZAA 3GTDA 2LPJA 4FLCA 2Y0NA 3KDYA 1TWHA 2RJRA 1C3CA 3CRW1 3GTGA 2J91A 1YFEA 2PTRA 2FENA 4BABA 1RE5A 3EZBA 2E2IA 1YNJD 3LR2A 1J3UA 1GKMA 2X75A 3RD8A 1XMDA 2MP0A 2NYNA 1VDKA 3E04A 1DOFA 1GKJA 2BE5D 5IZ2A 1K7WA 2VUMA 1I50A 2NVYA 2PTQA 1T6JA 1C3UA 4APAA 2YIIA 1TWCA 2HWGA 2JA7A 1FUPA 2EZAA 3U4QA 1YFMA 3CRVA 3QBPA 5EYTA 1TJWA 2O7EA 4WNLA 2AQLA 1Y1VA 2K3OA 2CW0D 2RJSA 3NZ4A 1AUWA 4ADLA 5HW2A 3NO9A 1TWGA 4ADMA 1YNND 4NSLA 1SFOA 1XMCA 2X0OA 2R93A 2PFMA 1TWAA 2NYFA 1U16A 1Y1WA 4CQ5A 1U15A 2LKMB 3LR6A 1TJVA 4C5UA 4FBSA 2NVXA 1B8FA 4QIWA 1K83A 2E2HA 2MX9A 1EB4A 1TJ7A 1FUOA 2K3NA 2LPIA 1I0AA 3R6QA 3GTKA 2VD6A 1XWOA 2FIPA 3LR8A 2YU9A
chains in the Genus database with same CATH topology
1JSWA 2O78A 3KDZA 3R6VA 1K62A 3GZHA 3OCFA 3BHGA 3UNVA 4NLEA 1DCNA 4FFXA 5F92A 4C5SA 4EEIA 3TV2A 1FURA 1TJUA 1Y2MA 2O7DA 5EYVA 1GK2A 3CZOA 1KQ7A 5D6BA 4C5RA 2O7FA 4C6GA 5F91A 2HVGA 1GK3A 1Q5NA 3OCEA 2QVEA 2QGAB 4APBA 4V2QA 1HY0A 4HGVA 3C8TA 4BAAA 4MX2A 4V2RA 3RRPA 4EFCA 1FUQA 2E9FA 2PTSA 2O7BA 1T6PA 1W27A 1YISA 2OHYA 2O6YA 1HY1A 2FUSA 3GTDA 4FLCA 3KDYA 2RJRA 1C3CA 2J91A 1YFEA 2PTRA 4BABA 1RE5A 2X75A 1J3UA 3RD8A 1GKMA 2NYNA 1VDKA 3E04A 1DOFA 1GKJA 1K7WA 2PTQA 1T6JA 1C3UA 4APAA 1FUPA 5EYTA 1YFMA 3QBPA 1TJWA 2O7EA 4ADLA 2RJSA 3NZ4A 1AUWA 5HW2A 3NO9A 4ADMA 4NSLA 2PFMA 2NYFA 1U16A 4CQ5A 1U15A 1TJVA 4C5UA 1B8FA 1EB4A 1TJ7A 1FUOA 3R6QA 1I0AA 2VD6A 1XWOA 3R6YA 2YIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JSW A;  2O78 A;  3KDZ A;  3R6V A;  1K62 A;  3GZH A;  3OCF A;  3BHG A;  3UNV A;  4NLE A;  1DCN A;  4FFX A;  5F92 A;  4C5S A;  4EEI A;  3TV2 A;  1FUR A;  1TJU A;  1Y2M A;  2O7D A;  5EYV A;  1GK2 A;  3CZO A;  1KQ7 A;  5D6B A;  4C5R A;  2O7F A;  4C6G A;  5F91 A;  2HVG A;  1GK3 A;  1Q5N A;  3OCE A;  2QVE A;  2QGA B;  4APB A;  4V2Q A;  1HY0 A;  4HGV A;  3C8T A;  4BAA A;  4MX2 A;  4V2R A;  3RRP A;  4EFC A;  1FUQ A;  2E9F A;  2PTS A;  2O7B A;  1T6P A;  1W27 A;  1YIS A;  2OHY A;  2O6Y A;  1HY1 A;  2FUS A;  3GTD A;  4FLC A;  3KDY A;  2RJR A;  1C3C A;  2J91 A;  1YFE A;  2PTR A;  4BAB A;  1RE5 A;  2X75 A;  1J3U A;  3RD8 A;  1GKM A;  2NYN A;  1VDK A;  3E04 A;  1DOF A;  1GKJ A;  1K7W A;  2PTQ A;  1T6J A;  1C3U A;  4APA A;  1FUP A;  5EYT A;  1YFM A;  3QBP A;  1TJW A;  2O7E A;  4ADL A;  2RJS A;  3NZ4 A;  1AUW A;  5HW2 A;  3NO9 A;  4ADM A;  4NSL A;  2PFM A;  2NYF A;  1U16 A;  4CQ5 A;  1U15 A;  1TJV A;  4C5U A;  1B8F A;  1EB4 A;  1TJ7 A;  1FUO A;  3R6Q A;  1I0A A;  2VD6 A;  1XWO A;  3R6Y A;  2YII A; 
#chains in the Genus database with same CATH topology
 3GTL A;  3R6Y A;  1I3Q A;  1JSW A;  1R9T A;  2O78 A;  2A69 D;  2EZC A;  3GTM A;  2R7Z A;  3KDZ A;  1K62 A;  3GZH A;  3R6V A;  3OCF A;  1ZYR D;  3BHG A;  4NLE A;  3UNV A;  1DCN A;  5M0J A;  2N3E A;  4FFX A;  1SMY D;  2VK9 A;  3GTO A;  1ZYM A;  3H0G A;  5F92 A;  2VSF A;  2LYI A;  4C5S A;  4EEI A;  3TV2 A;  3GTJ A;  2X0Q A;  2MX8 A;  1FUR A;  2JA5 A;  1TJU A;  2FEL A;  1Y2M A;  2O7D A;  5EYV A;  1GK2 A;  4A15 A;  3CZO A;  1KQ7 A;  1WCM A;  1EZA A;  2K3Q A;  5D6B A;  4C5R A;  3CQZ A;  4CEJ A;  5H8W A;  1I6V D;  2O7F A;  2LTH A;  4C6G A;  5F91 A;  3LRD A;  4CEI A;  3GTP A;  2HVG A;  2EZB A;  2MQA A;  1IW7 D;  3FKI A;  1GK3 A;  2A68 D;  1Q5N A;  2A6E D;  2F5J A;  2X0P A;  2A6H D;  3OCE A;  2QVE A;  1XL7 A;  2QGA B;  3U44 A;  1EZB A;  2HRO A;  4APB A;  1XLY A;  4V2Q A;  3EZE A;  1HY0 A;  4CEH A;  4HGV A;  1HQM D;  2VL7 A;  1XL8 A;  3C8T A;  2R92 A;  4BAA A;  4MX2 A;  4V2R A;  3RRP A;  4EFC A;  1FUQ A;  2N1D B;  4C2M A;  2FIO A;  3GTQ A;  2E9F A;  2PTS A;  2O7B A;  2B63 A;  1T6P A;  2O5J D;  1W27 A;  2JA6 A;  1YIS A;  5M0I A;  1TWF A;  2OHY A;  2O6Y A;  1HY1 A;  2FUS A;  3EZA A;  3GTD A;  2LPJ A;  4FLC A;  2Y0N A;  3KDY A;  1TWH A;  2RJR A;  1C3C A;  3CRW 1;  3GTG A;  2J91 A;  1YFE A;  2PTR A;  2FEN A;  4BAB A;  1RE5 A;  3EZB A;  2E2I A;  1YNJ D;  3LR2 A;  1J3U A;  1GKM A;  2X75 A;  3RD8 A;  1XMD A;  2MP0 A;  2NYN A;  1VDK A;  3E04 A;  1DOF A;  1GKJ A;  2BE5 D;  5IZ2 A;  1K7W A;  2VUM A;  1I50 A;  2NVY A;  2PTQ A;  1T6J A;  1C3U A;  4APA A;  2YII A;  1TWC A;  2HWG A;  2JA7 A;  1FUP A;  2EZA A;  3U4Q A;  1YFM A;  3CRV A;  3QBP A;  5EYT A;  1TJW A;  2O7E A;  4WNL A;  2AQL A;  1Y1V A;  2K3O A;  2CW0 D;  2RJS A;  3NZ4 A;  1AUW A;  4ADL A;  5HW2 A;  3NO9 A;  1TWG A;  4ADM A;  1YNN D;  4NSL A;  1SFO A;  1XMC A;  2X0O A;  2R93 A;  2PFM A;  1TWA A;  2NYF A;  1U16 A;  1Y1W A;  4CQ5 A;  1U15 A;  2LKM B;  3LR6 A;  1TJV A;  4C5U A;  4FBS A;  2NVX A;  1B8F A;  4QIW A;  1K83 A;  2E2H A;  2MX9 A;  1EB4 A;  1TJ7 A;  1FUO A;  2K3N A;  2LPI A;  1I0A A;  3R6Q A;  3GTK A;  2VD6 A;  1XWO A;  2FIP A;  3LR8 A;  2YU9 A; 
#chains in the Genus database with same CATH homology
 1JSW A;  2O78 A;  3KDZ A;  3R6V A;  1K62 A;  3GZH A;  3OCF A;  3BHG A;  3UNV A;  4NLE A;  1DCN A;  4FFX A;  5F92 A;  4C5S A;  4EEI A;  3TV2 A;  1FUR A;  1TJU A;  1Y2M A;  2O7D A;  5EYV A;  1GK2 A;  3CZO A;  1KQ7 A;  5D6B A;  4C5R A;  2O7F A;  4C6G A;  5F91 A;  2HVG A;  1GK3 A;  1Q5N A;  3OCE A;  2QVE A;  2QGA B;  4APB A;  4V2Q A;  1HY0 A;  4HGV A;  3C8T A;  4BAA A;  4MX2 A;  4V2R A;  3RRP A;  4EFC A;  1FUQ A;  2E9F A;  2PTS A;  2O7B A;  1T6P A;  1W27 A;  1YIS A;  2OHY A;  2O6Y A;  1HY1 A;  2FUS A;  3GTD A;  4FLC A;  3KDY A;  2RJR A;  1C3C A;  2J91 A;  1YFE A;  2PTR A;  4BAB A;  1RE5 A;  2X75 A;  1J3U A;  3RD8 A;  1GKM A;  2NYN A;  1VDK A;  3E04 A;  1DOF A;  1GKJ A;  1K7W A;  2PTQ A;  1T6J A;  1C3U A;  4APA A;  1FUP A;  5EYT A;  1YFM A;  3QBP A;  1TJW A;  2O7E A;  4ADL A;  2RJS A;  3NZ4 A;  1AUW A;  5HW2 A;  3NO9 A;  4ADM A;  4NSL A;  2PFM A;  2NYF A;  1U16 A;  4CQ5 A;  1U15 A;  1TJV A;  4C5U A;  1B8F A;  1EB4 A;  1TJ7 A;  1FUO A;  3R6Q A;  1I0A A;  2VD6 A;  1XWO A;  3R6Y A;  2YII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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