2LTHA

Nmr structure of major ampullate spidroin 1 n-terminal domain at ph 5.5
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
137
structure length
137
Chain Sequence
GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMNDVSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Major ampullate spidroin 1
publication title Sequential pH-driven dimerization and stabilization of the N-terminal domain enables rapid spider silk formation.
pubmed doi rcsb
source organism Euprosthenops australis
molecule tags Structural protein
total genus 49
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lthA01
5IZ2A 2N3EA 3LR6A 3LR2A 3LRDA 2LPIA 2MX8A 2LPJA 2MX9A 3LR8A 4FBSA 2LTHA 2K3QA
chains in the Genus database with same CATH superfamily
2K3OA 1Y1WA 2X0PA 2N1DB 3GTOA 2EZAA 1I3QA 2A6ED 1ZYRD 3GTLA 1R9TA 4C5SA 2E2IA 1K83A 2K3QA 2MP0A 2NVYA 4CQ5A 2F5JA 2MQAA 2JA7A 2K3NA 4C5UA 2Y0NA 3LR8A 2E2HA 3NZ4A 2JA5A 2JA6A 2HWGA 2R93A 3GTJA 1YNJD 2LKMB 3LR6A 2VUMA 4C6GA 4BABA 1EZBA 2YU9A 4V2RA 2R92A 3CQZA 4CEHA 4CEIA 2X0OA 4C2MA 3GTKA 2VK9A 3EZAA 1TWFA 2X0QA 1I6VD 2YIIA 2A68D 2FIOA 1SFOA 3GTGA 2EZBA 4FBSA 2CW0D 1TWGA 1Y1VA 3U4QA 4C5RA 1W27A 2N3EA 2O5JD 5IZ2A 1T6PA 2LYIA 1I50A 1IW7D 1TWAA 2LPJA 1YNND 1EZAA 2BE5D 2FIPA 1T6JA 3U44A 3GTPA 3LRDA 1Y2MA 2EZCA 1SMYD 2HROA 3GTMA 2R7ZA 2LTHA 3H0GA 4QIWA 2NVXA 4V2QA 1TWHA 2LPIA 2MX9A 3LR2A 3EZEA 4BAAA 4CEJA 3GTQA 2B63A 1ZYMA 2A69D 2AQLA 3FKIA 2MX8A 1HQMD 1WCMA 2A6HD 3EZBA 1TWCA
chains in the Genus database with same CATH topology
2K3OA 1Y1WA 2X0PA 2N1DB 3GTOA 1I3QA 2A6ED 1ZYRD 3GTLA 1R9TA 2E2IA 1K83A 2K3QA 2NVYA 2F5JA 2MQAA 2JA7A 2K3NA 2Y0NA 3LR8A 2E2HA 2JA5A 2JA6A 2R93A 3GTJA 1YNJD 2LKMB 3LR6A 2VUMA 2YU9A 2R92A 3CQZA 4CEHA 4CEIA 2X0OA 4C2MA 3GTKA 2VK9A 1TWFA 2X0QA 1I6VD 2A68D 2FIOA 1SFOA 3GTGA 4FBSA 2CW0D 1TWGA 1Y1VA 3U4QA 2N3EA 2O5JD 5IZ2A 2LYIA 1I50A 1IW7D 1TWAA 2LPJA 1YNND 2BE5D 2FIPA 3U44A 3GTPA 3LRDA 1SMYD 3GTMA 2R7ZA 2LTHA 3H0GA 4QIWA 2NVXA 1TWHA 2LPIA 2MX9A 3LR2A 4CEJA 3GTQA 2B63A 2A69D 2AQLA 3FKIA 2MX8A 1HQMD 1WCMA 2A6HD 1TWCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IZ2 A;  2N3E A;  3LR6 A;  3LR2 A;  3LRD A;  2LPI A;  2MX8 A;  2LPJ A;  2MX9 A;  3LR8 A;  4FBS A;  2LTH A;  2K3Q A; 
#chains in the Genus database with same CATH topology
 2K3O A;  1Y1W A;  2X0P A;  2N1D B;  3GTO A;  2EZA A;  1I3Q A;  2A6E D;  1ZYR D;  3GTL A;  1R9T A;  4C5S A;  2E2I A;  1K83 A;  2K3Q A;  2MP0 A;  2NVY A;  4CQ5 A;  2F5J A;  2MQA A;  2JA7 A;  2K3N A;  4C5U A;  2Y0N A;  3LR8 A;  2E2H A;  3NZ4 A;  2JA5 A;  2JA6 A;  2HWG A;  2R93 A;  3GTJ A;  1YNJ D;  2LKM B;  3LR6 A;  2VUM A;  4C6G A;  4BAB A;  1EZB A;  2YU9 A;  4V2R A;  2R92 A;  3CQZ A;  4CEH A;  4CEI A;  2X0O A;  4C2M A;  3GTK A;  2VK9 A;  3EZA A;  1TWF A;  2X0Q A;  1I6V D;  2YII A;  2A68 D;  2FIO A;  1SFO A;  3GTG A;  2EZB A;  4FBS A;  2CW0 D;  1TWG A;  1Y1V A;  3U4Q A;  4C5R A;  1W27 A;  2N3E A;  2O5J D;  5IZ2 A;  1T6P A;  2LYI A;  1I50 A;  1IW7 D;  1TWA A;  2LPJ A;  1YNN D;  1EZA A;  2BE5 D;  2FIP A;  1T6J A;  3U44 A;  3GTP A;  3LRD A;  1Y2M A;  2EZC A;  1SMY D;  2HRO A;  3GTM A;  2R7Z A;  2LTH A;  3H0G A;  4QIW A;  2NVX A;  4V2Q A;  1TWH A;  2LPI A;  2MX9 A;  3LR2 A;  3EZE A;  4BAA A;  4CEJ A;  3GTQ A;  2B63 A;  1ZYM A;  2A69 D;  2AQL A;  3FKI A;  2MX8 A;  1HQM D;  1WCM A;  2A6H D;  3EZB A;  1TWC A; 
#chains in the Genus database with same CATH homology
 2K3O A;  1Y1W A;  2X0P A;  2N1D B;  3GTO A;  1I3Q A;  2A6E D;  1ZYR D;  3GTL A;  1R9T A;  2E2I A;  1K83 A;  2K3Q A;  2NVY A;  2F5J A;  2MQA A;  2JA7 A;  2K3N A;  2Y0N A;  3LR8 A;  2E2H A;  2JA5 A;  2JA6 A;  2R93 A;  3GTJ A;  1YNJ D;  2LKM B;  3LR6 A;  2VUM A;  2YU9 A;  2R92 A;  3CQZ A;  4CEH A;  4CEI A;  2X0O A;  4C2M A;  3GTK A;  2VK9 A;  1TWF A;  2X0Q A;  1I6V D;  2A68 D;  2FIO A;  1SFO A;  3GTG A;  4FBS A;  2CW0 D;  1TWG A;  1Y1V A;  3U4Q A;  2N3E A;  2O5J D;  5IZ2 A;  2LYI A;  1I50 A;  1IW7 D;  1TWA A;  2LPJ A;  1YNN D;  2BE5 D;  2FIP A;  3U44 A;  3GTP A;  3LRD A;  1SMY D;  3GTM A;  2R7Z A;  2LTH A;  3H0G A;  4QIW A;  2NVX A;  1TWH A;  2LPI A;  2MX9 A;  3LR2 A;  4CEJ A;  3GTQ A;  2B63 A;  2A69 D;  2AQL A;  3FKI A;  2MX8 A;  1HQM D;  1WCM A;  2A6H D;  1TWC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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