2LTHA

Nmr structure of major ampullate spidroin 1 n-terminal domain at ph 5.5
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
137
structure length
137
Chain Sequence
GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMNDVSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Major ampullate spidroin 1
publication title Sequential pH-driven dimerization and stabilization of the N-terminal domain enables rapid spider silk formation.
pubmed doi rcsb
source organism Euprosthenops australis
total genus 49
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lthA01
2LPJA 2N3EA 2LPIA 3LRDA 2MX8A 2K3QA 4FBSA 3LR2A 3LR6A 3LR8A 5IZ2A 2MX9A 2LTHA
chains in the Genus database with same CATH superfamily
2F5JA 2LKMB 2FIOA 1W27A 3LR8A 2N1DB 3GTJA 2EZCA 2LPJA 2X0QA 2FIPA 3LR6A 2VK9A 2X0OA 5IZ2A 4C5SA 2LYIA 1Y1VA 1R9TA 4CEIA 2A68D 1I3QA 4CEJA 2Y0NA 2LTHA 2A6HD 2E2HA 2JA7A 1I50A 2HWGA 1WCMA 3LR2A 2HROA 3GTLA 1K83A 4C5UA 1IW7D 2K3OA 4CQ5A 3CQZA 3LRDA 1YNND 1Y1WA 4QIWA 4BAAA 2E2IA 2K3NA 2R7ZA 3H0GA 2YU9A 4C6GA 1YNJD 2EZAA 3GTOA 3GTPA 4FBSA 1TWCA 4C5RA 2JA5A 2X0PA 4C2MA 2NVXA 3U4QA 3EZAA 1TWAA 1ZYRD 2R93A 1SFOA 2N3EA 2K3QA 3FKIA 2O5JD 3EZBA 1T6JA 3NZ4A 1ZYMA 2AQLA 2YIIA 1Y2MA 3EZEA 4V2QA 2A6ED 4CEHA 2LPIA 2JA6A 1TWGA 1EZAA 2R92A 2VUMA 2MP0A 3GTQA 3GTKA 2BE5D 2MX9A 2EZBA 1TWHA 3U44A 1T6PA 2MQAA 1SMYD 2CW0D 3GTGA 2B63A 1EZBA 2MX8A 3GTMA 1HQMD 4V2RA 2NVYA 1TWFA 2A69D 1I6VD 4BABA
chains in the Genus database with same CATH topology
2F5JA 2LKMB 2FIOA 3LR8A 2N1DB 3GTJA 2LPJA 2X0QA 2FIPA 3LR6A 2VK9A 2X0OA 5IZ2A 2LYIA 1Y1VA 1R9TA 4CEIA 2A68D 1I3QA 4CEJA 2Y0NA 2LTHA 2A6HD 2E2HA 2JA7A 1I50A 1WCMA 3LR2A 3GTLA 1K83A 1IW7D 2K3OA 3CQZA 3LRDA 1YNND 1Y1WA 4QIWA 2E2IA 2K3NA 2R7ZA 3H0GA 2YU9A 1YNJD 3GTOA 3GTPA 4FBSA 1TWCA 2JA5A 2X0PA 4C2MA 2NVXA 3U4QA 1TWAA 1ZYRD 2R93A 1SFOA 2N3EA 2K3QA 3FKIA 2O5JD 2AQLA 2A6ED 4CEHA 2LPIA 2JA6A 1TWGA 2R92A 2VUMA 3GTQA 3GTKA 2BE5D 2MX9A 1TWHA 3U44A 2MQAA 1SMYD 2CW0D 3GTGA 2B63A 2MX8A 3GTMA 1HQMD 2NVYA 1TWFA 2A69D 1I6VD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LPJ A;  2N3E A;  2LPI A;  3LRD A;  2MX8 A;  2K3Q A;  4FBS A;  3LR2 A;  3LR6 A;  3LR8 A;  5IZ2 A;  2MX9 A;  2LTH A; 
#chains in the Genus database with same CATH topology
 2F5J A;  2LKM B;  2FIO A;  1W27 A;  3LR8 A;  2N1D B;  3GTJ A;  2EZC A;  2LPJ A;  2X0Q A;  2FIP A;  3LR6 A;  2VK9 A;  2X0O A;  5IZ2 A;  4C5S A;  2LYI A;  1Y1V A;  1R9T A;  4CEI A;  2A68 D;  1I3Q A;  4CEJ A;  2Y0N A;  2LTH A;  2A6H D;  2E2H A;  2JA7 A;  1I50 A;  2HWG A;  1WCM A;  3LR2 A;  2HRO A;  3GTL A;  1K83 A;  4C5U A;  1IW7 D;  2K3O A;  4CQ5 A;  3CQZ A;  3LRD A;  1YNN D;  1Y1W A;  4QIW A;  4BAA A;  2E2I A;  2K3N A;  2R7Z A;  3H0G A;  2YU9 A;  4C6G A;  1YNJ D;  2EZA A;  3GTO A;  3GTP A;  4FBS A;  1TWC A;  4C5R A;  2JA5 A;  2X0P A;  4C2M A;  2NVX A;  3U4Q A;  3EZA A;  1TWA A;  1ZYR D;  2R93 A;  1SFO A;  2N3E A;  2K3Q A;  3FKI A;  2O5J D;  3EZB A;  1T6J A;  3NZ4 A;  1ZYM A;  2AQL A;  2YII A;  1Y2M A;  3EZE A;  4V2Q A;  2A6E D;  4CEH A;  2LPI A;  2JA6 A;  1TWG A;  1EZA A;  2R92 A;  2VUM A;  2MP0 A;  3GTQ A;  3GTK A;  2BE5 D;  2MX9 A;  2EZB A;  1TWH A;  3U44 A;  1T6P A;  2MQA A;  1SMY D;  2CW0 D;  3GTG A;  2B63 A;  1EZB A;  2MX8 A;  3GTM A;  1HQM D;  4V2R A;  2NVY A;  1TWF A;  2A69 D;  1I6V D;  4BAB A; 
#chains in the Genus database with same CATH homology
 2F5J A;  2LKM B;  2FIO A;  3LR8 A;  2N1D B;  3GTJ A;  2LPJ A;  2X0Q A;  2FIP A;  3LR6 A;  2VK9 A;  2X0O A;  5IZ2 A;  2LYI A;  1Y1V A;  1R9T A;  4CEI A;  2A68 D;  1I3Q A;  4CEJ A;  2Y0N A;  2LTH A;  2A6H D;  2E2H A;  2JA7 A;  1I50 A;  1WCM A;  3LR2 A;  3GTL A;  1K83 A;  1IW7 D;  2K3O A;  3CQZ A;  3LRD A;  1YNN D;  1Y1W A;  4QIW A;  2E2I A;  2K3N A;  2R7Z A;  3H0G A;  2YU9 A;  1YNJ D;  3GTO A;  3GTP A;  4FBS A;  1TWC A;  2JA5 A;  2X0P A;  4C2M A;  2NVX A;  3U4Q A;  1TWA A;  1ZYR D;  2R93 A;  1SFO A;  2N3E A;  2K3Q A;  3FKI A;  2O5J D;  2AQL A;  2A6E D;  4CEH A;  2LPI A;  2JA6 A;  1TWG A;  2R92 A;  2VUM A;  3GTQ A;  3GTK A;  2BE5 D;  2MX9 A;  1TWH A;  3U44 A;  2MQA A;  1SMY D;  2CW0 D;  3GTG A;  2B63 A;  2MX8 A;  3GTM A;  1HQM D;  2NVY A;  1TWF A;  2A69 D;  1I6V D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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