2LTHA

Nmr structure of major ampullate spidroin 1 n-terminal domain at ph 5.5
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
137
structure length
137
Chain Sequence
GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMNDVSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Euprosthenops australis
publication title Sequential pH-driven dimerization and stabilization of the N-terminal domain enables rapid spider silk formation.
pubmed doi rcsb
molecule keywords Major ampullate spidroin 1
total genus 49
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lthA01
2K3QA 3LRDA 2MX9A 3LR6A 3LR8A 2MX8A 2LPIA 4FBSA 3LR2A 2N3EA 2LTHA 5IZ2A 2LPJA
chains in the Genus database with same CATH superfamily
2HWGA 2LPIA 2E2HA 2EZAA 3LR2A 2N3EA 1TWFA 2MQAA 1K83A 4CEIA 3GTLA 3LR6A 2VUMA 4C2MA 3FKIA 2YU9A 1HQMD 2X0QA 4QIWA 4C5UA 4CQ5A 2A6ED 4C5SA 1YNND 3U4QA 2MP0A 2JA6A 3CQZA 4CEHA 2K3NA 3GTKA 1TWCA 2MX9A 2MX8A 2A6HD 2R7ZA 1T6JA 2Y0NA 1TWAA 2FIPA 1YNJD 2NVYA 2EZBA 2VK9A 3GTMA 2R92A 3GTJA 1I3QA 1ZYMA 3EZAA 1Y1VA 1WCMA 2F5JA 4C5RA 2R93A 3GTPA 2EZCA 3U44A 1I50A 1TWHA 3GTGA 1I6VD 2NVXA 3GTOA 1ZYRD 3EZBA 3H0GA 2A69D 1R9TA 2AQLA 2CW0D 1EZAA 1T6PA 4V2QA 5IZ2A 2E2IA 4CEJA 3GTQA 2B63A 1Y1WA 2HROA 2A68D 2LPJA 2BE5D 2X0PA 4BAAA 1SMYD 4V2RA 2JA5A 4C6GA 2LYIA 2FIOA 3EZEA 1EZBA 1SFOA 3LR8A 2JA7A 1TWGA 3NZ4A 2O5JD 2K3QA 3LRDA 2K3OA 2X0OA 2YIIA 1IW7D 2N1DB 4FBSA 1W27A 1Y2MA 2LTHA 2LKMB 4BABA
chains in the Genus database with same CATH topology
2LPIA 2E2HA 3LR2A 2N3EA 1TWFA 2MQAA 1K83A 4CEIA 3GTLA 3LR6A 2VUMA 4C2MA 3FKIA 2YU9A 1HQMD 2X0QA 4QIWA 2A6ED 1YNND 3U4QA 2JA6A 3CQZA 4CEHA 2K3NA 3GTKA 1TWCA 2MX9A 2MX8A 2A6HD 2R7ZA 2Y0NA 1TWAA 2FIPA 1YNJD 2NVYA 2VK9A 3GTMA 2R92A 3GTJA 1I3QA 1Y1VA 1WCMA 2F5JA 2R93A 3GTPA 3U44A 1I50A 1TWHA 3GTGA 1I6VD 2NVXA 3GTOA 1ZYRD 3H0GA 2A69D 1R9TA 2AQLA 2CW0D 5IZ2A 2E2IA 4CEJA 3GTQA 2B63A 1Y1WA 2A68D 2LPJA 2BE5D 2X0PA 1SMYD 2JA5A 2LYIA 2FIOA 1SFOA 3LR8A 2JA7A 1TWGA 2O5JD 2K3QA 3LRDA 2K3OA 2X0OA 1IW7D 2N1DB 4FBSA 2LTHA 2LKMB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2K3Q A;  3LRD A;  2MX9 A;  3LR6 A;  3LR8 A;  2MX8 A;  2LPI A;  4FBS A;  3LR2 A;  2N3E A;  2LTH A;  5IZ2 A;  2LPJ A; 
#chains in the Genus database with same CATH topology
 2HWG A;  2LPI A;  2E2H A;  2EZA A;  3LR2 A;  2N3E A;  1TWF A;  2MQA A;  1K83 A;  4CEI A;  3GTL A;  3LR6 A;  2VUM A;  4C2M A;  3FKI A;  2YU9 A;  1HQM D;  2X0Q A;  4QIW A;  4C5U A;  4CQ5 A;  2A6E D;  4C5S A;  1YNN D;  3U4Q A;  2MP0 A;  2JA6 A;  3CQZ A;  4CEH A;  2K3N A;  3GTK A;  1TWC A;  2MX9 A;  2MX8 A;  2A6H D;  2R7Z A;  1T6J A;  2Y0N A;  1TWA A;  2FIP A;  1YNJ D;  2NVY A;  2EZB A;  2VK9 A;  3GTM A;  2R92 A;  3GTJ A;  1I3Q A;  1ZYM A;  3EZA A;  1Y1V A;  1WCM A;  2F5J A;  4C5R A;  2R93 A;  3GTP A;  2EZC A;  3U44 A;  1I50 A;  1TWH A;  3GTG A;  1I6V D;  2NVX A;  3GTO A;  1ZYR D;  3EZB A;  3H0G A;  2A69 D;  1R9T A;  2AQL A;  2CW0 D;  1EZA A;  1T6P A;  4V2Q A;  5IZ2 A;  2E2I A;  4CEJ A;  3GTQ A;  2B63 A;  1Y1W A;  2HRO A;  2A68 D;  2LPJ A;  2BE5 D;  2X0P A;  4BAA A;  1SMY D;  4V2R A;  2JA5 A;  4C6G A;  2LYI A;  2FIO A;  3EZE A;  1EZB A;  1SFO A;  3LR8 A;  2JA7 A;  1TWG A;  3NZ4 A;  2O5J D;  2K3Q A;  3LRD A;  2K3O A;  2X0O A;  2YII A;  1IW7 D;  2N1D B;  4FBS A;  1W27 A;  1Y2M A;  2LTH A;  2LKM B;  4BAB A; 
#chains in the Genus database with same CATH homology
 2LPI A;  2E2H A;  3LR2 A;  2N3E A;  1TWF A;  2MQA A;  1K83 A;  4CEI A;  3GTL A;  3LR6 A;  2VUM A;  4C2M A;  3FKI A;  2YU9 A;  1HQM D;  2X0Q A;  4QIW A;  2A6E D;  1YNN D;  3U4Q A;  2JA6 A;  3CQZ A;  4CEH A;  2K3N A;  3GTK A;  1TWC A;  2MX9 A;  2MX8 A;  2A6H D;  2R7Z A;  2Y0N A;  1TWA A;  2FIP A;  1YNJ D;  2NVY A;  2VK9 A;  3GTM A;  2R92 A;  3GTJ A;  1I3Q A;  1Y1V A;  1WCM A;  2F5J A;  2R93 A;  3GTP A;  3U44 A;  1I50 A;  1TWH A;  3GTG A;  1I6V D;  2NVX A;  3GTO A;  1ZYR D;  3H0G A;  2A69 D;  1R9T A;  2AQL A;  2CW0 D;  5IZ2 A;  2E2I A;  4CEJ A;  3GTQ A;  2B63 A;  1Y1W A;  2A68 D;  2LPJ A;  2BE5 D;  2X0P A;  1SMY D;  2JA5 A;  2LYI A;  2FIO A;  1SFO A;  3LR8 A;  2JA7 A;  1TWG A;  2O5J D;  2K3Q A;  3LRD A;  2K3O A;  2X0O A;  1IW7 D;  2N1D B;  4FBS A;  2LTH A;  2LKM B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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