2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (19-27)EMPTYTIV5 (121-124)AH3 (31-49)AH6 (100-118)TIV2 (96-99)TI1 (119-122)TIV4 (118-121)AH1 (3-17)AH5 (74-92)TVIII1 (93-96)AH4 (54-68)TIV1 (51-54)Updating...
connected with : NaN
molecule tags Structural protein
source organism Nephila antipodiana
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
molecule keywords TuSp1
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2MQAA 2K3NA 2K3OA 2LYIA
chains in the Genus database with same CATH superfamily
2B63A 2JA7A 4V2QA 2EZAA 2JA5A 3LRDA 2MP0A 2LPJA 2F5JA 1WCMA 4BAAA 3EZAA 3GTQA 4C5RA 3U4QA 1SFOA 2LPIA 2K3NA 2E2HA 1EZBA 2HWGA 4CEJA 2FIPA 4CEIA 4CEHA 2CW0D 3H0GA 2N3EA 1T6PA 1ZYRD 2A6ED 1YNND 2EZCA 3LR8A 3GTKA 2A6HD 1I6VD 1EZAA 2VK9A 4C2MA 2LYIA 2NVYA 2E2IA 4CQ5A 3LR2A 2K3OA 3U44A 2LTHA 2LKMB 1TWCA 2A68D 2R93A 2R7ZA 1ZYMA 4C6GA 2MX9A 3FKIA 4C5SA 1R9TA 2AQLA 4BABA 3LR6A 5IZ2A 1HQMD 1I3QA 2YU9A 3EZEA 2BE5D 1SMYD 1K83A 1YNJD 2X0QA 1TWHA 3GTPA 2MQAA 3GTOA 2YIIA 1TWAA 3GTGA 2EZBA 1TWGA 2Y0NA 4C5UA 3GTLA 2JA6A 2N1DB 1Y1WA 2X0PA 3NZ4A 2HROA 2MX8A 1Y1VA 2NVXA 4QIWA 3CQZA 1TWFA 2X0OA 4V2RA 2K3QA 1IW7D 2O5JD 4FBSA 1W27A 2FIOA 2R92A 3EZBA 2A69D 3GTMA 1Y2MA 1I50A 2VUMA 3GTJA 1T6JA
chains in the Genus database with same CATH topology
2B63A 2JA7A 2JA5A 3LRDA 2LPJA 2F5JA 1WCMA 3GTQA 3U4QA 1SFOA 2LPIA 2K3NA 2E2HA 4CEJA 2FIPA 4CEIA 4CEHA 2CW0D 3H0GA 2N3EA 1ZYRD 2A6ED 1YNND 3LR8A 3GTKA 2A6HD 1I6VD 2VK9A 4C2MA 2LYIA 2NVYA 2E2IA 3LR2A 2K3OA 3U44A 2LTHA 2LKMB 1TWCA 2A68D 2R93A 2R7ZA 2MX9A 3FKIA 1R9TA 2AQLA 3LR6A 5IZ2A 1HQMD 1I3QA 2YU9A 2BE5D 1SMYD 1K83A 1YNJD 2X0QA 1TWHA 3GTPA 2MQAA 3GTOA 1TWAA 3GTGA 1TWGA 2Y0NA 3GTLA 2JA6A 2N1DB 1Y1WA 2X0PA 2MX8A 1Y1VA 2NVXA 4QIWA 3CQZA 1TWFA 2X0OA 2O5JD 2K3QA 1IW7D 4FBSA 2FIOA 2R92A 2A69D 3GTMA 1I50A 2VUMA 3GTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3N A;  2K3O A;  2LYI A; 
#chains in the Genus database with same CATH topology
 2B63 A;  2JA7 A;  4V2Q A;  2EZA A;  2JA5 A;  3LRD A;  2MP0 A;  2LPJ A;  2F5J A;  1WCM A;  4BAA A;  3EZA A;  3GTQ A;  4C5R A;  3U4Q A;  1SFO A;  2LPI A;  2K3N A;  2E2H A;  1EZB A;  2HWG A;  4CEJ A;  2FIP A;  4CEI A;  4CEH A;  2CW0 D;  3H0G A;  2N3E A;  1T6P A;  1ZYR D;  2A6E D;  1YNN D;  2EZC A;  3LR8 A;  3GTK A;  2A6H D;  1I6V D;  1EZA A;  2VK9 A;  4C2M A;  2LYI A;  2NVY A;  2E2I A;  4CQ5 A;  3LR2 A;  2K3O A;  3U44 A;  2LTH A;  2LKM B;  1TWC A;  2A68 D;  2R93 A;  2R7Z A;  1ZYM A;  4C6G A;  2MX9 A;  3FKI A;  4C5S A;  1R9T A;  2AQL A;  4BAB A;  3LR6 A;  5IZ2 A;  1HQM D;  1I3Q A;  2YU9 A;  3EZE A;  2BE5 D;  1SMY D;  1K83 A;  1YNJ D;  2X0Q A;  1TWH A;  3GTP A;  2MQA A;  3GTO A;  2YII A;  1TWA A;  3GTG A;  2EZB A;  1TWG A;  2Y0N A;  4C5U A;  3GTL A;  2JA6 A;  2N1D B;  1Y1W A;  2X0P A;  3NZ4 A;  2HRO A;  2MX8 A;  1Y1V A;  2NVX A;  4QIW A;  3CQZ A;  1TWF A;  2X0O A;  4V2R A;  2K3Q A;  1IW7 D;  2O5J D;  4FBS A;  1W27 A;  2FIO A;  2R92 A;  3EZB A;  2A69 D;  3GTM A;  1Y2M A;  1I50 A;  2VUM A;  3GTJ A;  1T6J A; 
#chains in the Genus database with same CATH homology
 2B63 A;  2JA7 A;  2JA5 A;  3LRD A;  2LPJ A;  2F5J A;  1WCM A;  3GTQ A;  3U4Q A;  1SFO A;  2LPI A;  2K3N A;  2E2H A;  4CEJ A;  2FIP A;  4CEI A;  4CEH A;  2CW0 D;  3H0G A;  2N3E A;  1ZYR D;  2A6E D;  1YNN D;  3LR8 A;  3GTK A;  2A6H D;  1I6V D;  2VK9 A;  4C2M A;  2LYI A;  2NVY A;  2E2I A;  3LR2 A;  2K3O A;  3U44 A;  2LTH A;  2LKM B;  1TWC A;  2A68 D;  2R93 A;  2R7Z A;  2MX9 A;  3FKI A;  1R9T A;  2AQL A;  3LR6 A;  5IZ2 A;  1HQM D;  1I3Q A;  2YU9 A;  2BE5 D;  1SMY D;  1K83 A;  1YNJ D;  2X0Q A;  1TWH A;  3GTP A;  2MQA A;  3GTO A;  1TWA A;  3GTG A;  1TWG A;  2Y0N A;  3GTL A;  2JA6 A;  2N1D B;  1Y1W A;  2X0P A;  2MX8 A;  1Y1V A;  2NVX A;  4QIW A;  3CQZ A;  1TWF A;  2X0O A;  2O5J D;  2K3Q A;  1IW7 D;  4FBS A;  2FIO A;  2R92 A;  2A69 D;  3GTM A;  1I50 A;  2VUM A;  3GTJ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.