2K3OA

Solution structure of the type 2 repetitive domain (tusp1-rp2) of the egg case silk from nephila antipodiana
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
129
structure length
129
Chain Sequence
SYSSAFAQAASSSLATSSAISRAFASVSSASAASSLAYNIGLSAARSLGIASDTALAGALAQAVGGVGAGASASAYANAIARAAGQFLATQGVLNAVNASSLGSALANALSDSAANSAVSGNYLGVSQN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution structure of eggcase silk protein and its implications for silk fiber formation
pubmed doi rcsb
molecule tags Structural protein
source organism Nephila antipodiana
molecule keywords TuSp1
total genus 44
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2008-05-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2k3oA00
2MQAA 2K3OA 2K3NA 2LYIA
chains in the Genus database with same CATH superfamily
4CEHA 3GTLA 2FIPA 2VK9A 2YU9A 2R7ZA 2MX9A 3GTGA 2MP0A 3H0GA 2A68D 2LYIA 3CQZA 1Y1VA 3LRDA 1IW7D 2A6ED 2K3OA 2O5JD 3LR2A 1K83A 2K3QA 2K3NA 1W27A 3GTMA 3EZEA 3U44A 1R9TA 1TWAA 1I50A 1ZYMA 1EZAA 4QIWA 3LR6A 3GTOA 2F5JA 2E2HA 2B63A 2JA5A 4FBSA 1TWFA 2BE5D 2CW0D 4CEIA 2MQAA 4C2MA 2N1DB 2LKMB 4C5SA 1T6PA 1EZBA 1ZYRD 3GTPA 2N3EA 1SFOA 4V2QA 2LPJA 1Y2MA 1SMYD 1YNJD 4CEJA 3GTQA 2HWGA 2FIOA 2EZBA 1YNND 2X0OA 2AQLA 2A69D 2X0PA 2X0QA 4BABA 2MX8A 1T6JA 2YIIA 4V2RA 2VUMA 4C6GA 4C5RA 1Y1WA 2LTHA 2NVXA 1WCMA 2R92A 2JA7A 2R93A 4C5UA 2NVYA 3EZAA 1I3QA 2EZAA 3NZ4A 2A6HD 2JA6A 3GTJA 4BAAA 2Y0NA 1TWHA 2E2IA 3GTKA 1TWGA 3EZBA 3FKIA 1I6VD 1TWCA 2LPIA 2HROA 4CQ5A 1HQMD 5IZ2A 2EZCA 3LR8A 3U4QA
chains in the Genus database with same CATH topology
4CEHA 3GTLA 2FIPA 2VK9A 2YU9A 2R7ZA 2MX9A 3GTGA 3H0GA 2A68D 2LYIA 3CQZA 1Y1VA 3LRDA 1IW7D 2A6ED 2K3OA 2O5JD 3LR2A 1K83A 2K3QA 2K3NA 3GTMA 3U44A 1R9TA 1TWAA 1I50A 4QIWA 3LR6A 3GTOA 2F5JA 2E2HA 2B63A 2JA5A 4FBSA 1TWFA 2BE5D 2CW0D 4CEIA 2MQAA 4C2MA 2N1DB 2LKMB 1ZYRD 3GTPA 2N3EA 1SFOA 2LPJA 1SMYD 1YNJD 4CEJA 3GTQA 2FIOA 1YNND 2X0OA 2AQLA 2A69D 2X0PA 2X0QA 2MX8A 2VUMA 1Y1WA 2LTHA 2NVXA 1WCMA 2R92A 2JA7A 2R93A 2NVYA 1I3QA 2A6HD 2JA6A 3GTJA 2Y0NA 1TWHA 2E2IA 3GTKA 1TWGA 3FKIA 1I6VD 1TWCA 2LPIA 1HQMD 5IZ2A 3LR8A 3U4QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3O A;  2K3N A;  2LYI A; 
#chains in the Genus database with same CATH topology
 4CEH A;  3GTL A;  2FIP A;  2VK9 A;  2YU9 A;  2R7Z A;  2MX9 A;  3GTG A;  2MP0 A;  3H0G A;  2A68 D;  2LYI A;  3CQZ A;  1Y1V A;  3LRD A;  1IW7 D;  2A6E D;  2K3O A;  2O5J D;  3LR2 A;  1K83 A;  2K3Q A;  2K3N A;  1W27 A;  3GTM A;  3EZE A;  3U44 A;  1R9T A;  1TWA A;  1I50 A;  1ZYM A;  1EZA A;  4QIW A;  3LR6 A;  3GTO A;  2F5J A;  2E2H A;  2B63 A;  2JA5 A;  4FBS A;  1TWF A;  2BE5 D;  2CW0 D;  4CEI A;  2MQA A;  4C2M A;  2N1D B;  2LKM B;  4C5S A;  1T6P A;  1EZB A;  1ZYR D;  3GTP A;  2N3E A;  1SFO A;  4V2Q A;  2LPJ A;  1Y2M A;  1SMY D;  1YNJ D;  4CEJ A;  3GTQ A;  2HWG A;  2FIO A;  2EZB A;  1YNN D;  2X0O A;  2AQL A;  2A69 D;  2X0P A;  2X0Q A;  4BAB A;  2MX8 A;  1T6J A;  2YII A;  4V2R A;  2VUM A;  4C6G A;  4C5R A;  1Y1W A;  2LTH A;  2NVX A;  1WCM A;  2R92 A;  2JA7 A;  2R93 A;  4C5U A;  2NVY A;  3EZA A;  1I3Q A;  2EZA A;  3NZ4 A;  2A6H D;  2JA6 A;  3GTJ A;  4BAA A;  2Y0N A;  1TWH A;  2E2I A;  3GTK A;  1TWG A;  3EZB A;  3FKI A;  1I6V D;  1TWC A;  2LPI A;  2HRO A;  4CQ5 A;  1HQM D;  5IZ2 A;  2EZC A;  3LR8 A;  3U4Q A; 
#chains in the Genus database with same CATH homology
 4CEH A;  3GTL A;  2FIP A;  2VK9 A;  2YU9 A;  2R7Z A;  2MX9 A;  3GTG A;  3H0G A;  2A68 D;  2LYI A;  3CQZ A;  1Y1V A;  3LRD A;  1IW7 D;  2A6E D;  2K3O A;  2O5J D;  3LR2 A;  1K83 A;  2K3Q A;  2K3N A;  3GTM A;  3U44 A;  1R9T A;  1TWA A;  1I50 A;  4QIW A;  3LR6 A;  3GTO A;  2F5J A;  2E2H A;  2B63 A;  2JA5 A;  4FBS A;  1TWF A;  2BE5 D;  2CW0 D;  4CEI A;  2MQA A;  4C2M A;  2N1D B;  2LKM B;  1ZYR D;  3GTP A;  2N3E A;  1SFO A;  2LPJ A;  1SMY D;  1YNJ D;  4CEJ A;  3GTQ A;  2FIO A;  1YNN D;  2X0O A;  2AQL A;  2A69 D;  2X0P A;  2X0Q A;  2MX8 A;  2VUM A;  1Y1W A;  2LTH A;  2NVX A;  1WCM A;  2R92 A;  2JA7 A;  2R93 A;  2NVY A;  1I3Q A;  2A6H D;  2JA6 A;  3GTJ A;  2Y0N A;  1TWH A;  2E2I A;  3GTK A;  1TWG A;  3FKI A;  1I6V D;  1TWC A;  2LPI A;  1HQM D;  5IZ2 A;  3LR8 A;  3U4Q A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...