2LTHA

Nmr structure of major ampullate spidroin 1 n-terminal domain at ph 5.5
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
137
structure length
137
Chain Sequence
GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAGMNDVSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Sequential pH-driven dimerization and stabilization of the N-terminal domain enables rapid spider silk formation.
pubmed doi rcsb
molecule tags Structural protein
source organism Euprosthenops australis
molecule keywords Major ampullate spidroin 1
total genus 49
structure length 137
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16763 Spidroin_N Major ampullate spidroin 1, spider silk protein 1, N-term
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.70 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2lthA01
3LR8A 5IZ2A 3LR6A 2N3EA 3LRDA 2MX8A 2LTHA 2LPJA 2MX9A 3LR2A 4FBSA 2K3QA 2LPIA
chains in the Genus database with same CATH superfamily
2EZCA 2E2IA 3U4QA 1EZBA 1ZYMA 3CQZA 4FBSA 2K3QA 2A69D 1YNJD 2R93A 2YU9A 4CEHA 2CW0D 3GTGA 3GTKA 4BABA 3GTOA 2O5JD 1R9TA 2NVYA 4C5RA 2R7ZA 1I50A 2FIOA 3GTPA 2LKMB 2LYIA 1SFOA 2HWGA 2MX8A 2BE5D 2MX9A 2N1DB 2A6HD 1T6PA 4CEIA 4C6GA 2X0QA 2VUMA 2A68D 1I3QA 3LRDA 2EZBA 2JA5A 2X0PA 3GTQA 5IZ2A 3LR6A 3EZBA 1Y1VA 2LPJA 1K83A 2K3OA 3NZ4A 1TWFA 3GTJA 1TWGA 2F5JA 2R92A 1T6JA 2LPIA 1TWAA 1W27A 2VK9A 4CEJA 3GTLA 4BAAA 2FIPA 2JA7A 1TWHA 2MQAA 2Y0NA 4V2QA 4C5SA 3GTMA 1EZAA 2HROA 1Y1WA 2MP0A 2AQLA 2B63A 3EZEA 4V2RA 1ZYRD 1SMYD 1IW7D 2NVXA 2N3EA 1I6VD 2X0OA 1TWCA 2JA6A 3EZAA 2K3NA 4QIWA 1Y2MA 3LR2A 3LR8A 4C2MA 2A6ED 2LTHA 3H0GA 2E2HA 4C5UA 3FKIA 2YIIA 3U44A 2EZAA 1WCMA 1HQMD 4CQ5A 1YNND
chains in the Genus database with same CATH topology
2E2IA 3U4QA 3CQZA 4FBSA 2K3QA 2A69D 1YNJD 2R93A 2YU9A 4CEHA 2CW0D 3GTGA 3GTKA 3GTOA 2O5JD 1R9TA 2NVYA 2R7ZA 1I50A 2FIOA 3GTPA 2LKMB 2LYIA 1SFOA 2MX8A 2BE5D 2MX9A 2N1DB 2A6HD 4CEIA 2X0QA 2VUMA 2A68D 1I3QA 3LRDA 2JA5A 2X0PA 3GTQA 5IZ2A 3LR6A 1Y1VA 2LPJA 1K83A 2K3OA 1TWFA 3GTJA 1TWGA 2F5JA 2R92A 2LPIA 1TWAA 2VK9A 4CEJA 3GTLA 2FIPA 2JA7A 1TWHA 2MQAA 2Y0NA 3GTMA 1Y1WA 2AQLA 2B63A 1ZYRD 1SMYD 1IW7D 2NVXA 2N3EA 1I6VD 2X0OA 1TWCA 2JA6A 2K3NA 4QIWA 3LR2A 3LR8A 4C2MA 2A6ED 2LTHA 3H0GA 2E2HA 3FKIA 3U44A 1WCMA 1HQMD 1YNND
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LR8 A;  5IZ2 A;  3LR6 A;  2N3E A;  3LRD A;  2MX8 A;  2LTH A;  2LPJ A;  2MX9 A;  3LR2 A;  4FBS A;  2K3Q A;  2LPI A; 
#chains in the Genus database with same CATH topology
 2EZC A;  2E2I A;  3U4Q A;  1EZB A;  1ZYM A;  3CQZ A;  4FBS A;  2K3Q A;  2A69 D;  1YNJ D;  2R93 A;  2YU9 A;  4CEH A;  2CW0 D;  3GTG A;  3GTK A;  4BAB A;  3GTO A;  2O5J D;  1R9T A;  2NVY A;  4C5R A;  2R7Z A;  1I50 A;  2FIO A;  3GTP A;  2LKM B;  2LYI A;  1SFO A;  2HWG A;  2MX8 A;  2BE5 D;  2MX9 A;  2N1D B;  2A6H D;  1T6P A;  4CEI A;  4C6G A;  2X0Q A;  2VUM A;  2A68 D;  1I3Q A;  3LRD A;  2EZB A;  2JA5 A;  2X0P A;  3GTQ A;  5IZ2 A;  3LR6 A;  3EZB A;  1Y1V A;  2LPJ A;  1K83 A;  2K3O A;  3NZ4 A;  1TWF A;  3GTJ A;  1TWG A;  2F5J A;  2R92 A;  1T6J A;  2LPI A;  1TWA A;  1W27 A;  2VK9 A;  4CEJ A;  3GTL A;  4BAA A;  2FIP A;  2JA7 A;  1TWH A;  2MQA A;  2Y0N A;  4V2Q A;  4C5S A;  3GTM A;  1EZA A;  2HRO A;  1Y1W A;  2MP0 A;  2AQL A;  2B63 A;  3EZE A;  4V2R A;  1ZYR D;  1SMY D;  1IW7 D;  2NVX A;  2N3E A;  1I6V D;  2X0O A;  1TWC A;  2JA6 A;  3EZA A;  2K3N A;  4QIW A;  1Y2M A;  3LR2 A;  3LR8 A;  4C2M A;  2A6E D;  2LTH A;  3H0G A;  2E2H A;  4C5U A;  3FKI A;  2YII A;  3U44 A;  2EZA A;  1WCM A;  1HQM D;  4CQ5 A;  1YNN D; 
#chains in the Genus database with same CATH homology
 2E2I A;  3U4Q A;  3CQZ A;  4FBS A;  2K3Q A;  2A69 D;  1YNJ D;  2R93 A;  2YU9 A;  4CEH A;  2CW0 D;  3GTG A;  3GTK A;  3GTO A;  2O5J D;  1R9T A;  2NVY A;  2R7Z A;  1I50 A;  2FIO A;  3GTP A;  2LKM B;  2LYI A;  1SFO A;  2MX8 A;  2BE5 D;  2MX9 A;  2N1D B;  2A6H D;  4CEI A;  2X0Q A;  2VUM A;  2A68 D;  1I3Q A;  3LRD A;  2JA5 A;  2X0P A;  3GTQ A;  5IZ2 A;  3LR6 A;  1Y1V A;  2LPJ A;  1K83 A;  2K3O A;  1TWF A;  3GTJ A;  1TWG A;  2F5J A;  2R92 A;  2LPI A;  1TWA A;  2VK9 A;  4CEJ A;  3GTL A;  2FIP A;  2JA7 A;  1TWH A;  2MQA A;  2Y0N A;  3GTM A;  1Y1W A;  2AQL A;  2B63 A;  1ZYR D;  1SMY D;  1IW7 D;  2NVX A;  2N3E A;  1I6V D;  2X0O A;  1TWC A;  2JA6 A;  2K3N A;  4QIW A;  3LR2 A;  3LR8 A;  4C2M A;  2A6E D;  2LTH A;  3H0G A;  2E2H A;  3FKI A;  3U44 A;  1WCM A;  1HQM D;  1YNN D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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