2MQAA

3d structure of rp domain of misp
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
125
structure length
125
Chain Sequence
GNAFAQSLSSNLLSSGDFVQMISSTTSTDQAVSVATSVAQNVGNQLGLDANAMNSLLGAVSGYVSTLGNAISDASAYANAISSAIGNVLANSGSISESTASSAASSAASSVTTTLTSYGPAVFYA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (17-30)AH2 (33-41)AH4 (66-83)TVIII1 (84-87)TI1 (83-86)TIV1 (86-89)AH5 (90-108)TIV2 (111-114)TIV3 (112-115)AH6 (117-133)AH3 (44-62)EMPTYUpdating...
connected with : NaN
molecule tags Structural protein
source organism Nephila antipodiana
publication title 3D structure of RP domain of MiSp
rcsb
molecule keywords Minor ampullate fibroin 1
total genus 28
structure length 125
sequence length 125
ec nomenclature
pdb deposition date 2014-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.274.60 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2mqaA00
2MQAA 2K3NA 2LYIA 2K3OA
chains in the Genus database with same CATH superfamily
1R9TA 2R7ZA 4V2RA 2YIIA 3LRDA 2JA7A 2MX8A 2K3OA 1I3QA 3U4QA 1T6JA 1ZYMA 2EZBA 2E2HA 1YNND 2NVXA 4BABA 3EZBA 1Y1WA 4C5UA 2CW0D 2N3EA 1TWCA 5IZ2A 2A68D 1TWFA 1Y1VA 2A6HD 2AQLA 2O5JD 2K3NA 3GTOA 1EZBA 2K3QA 4CEIA 4C6GA 2LYIA 3GTMA 4CQ5A 2A69D 1K83A 2X0QA 2N1DB 2NVYA 2VK9A 4C5RA 1W27A 4QIWA 2B63A 4FBSA 1T6PA 3FKIA 3EZAA 3H0GA 1SFOA 2EZAA 2JA6A 4CEJA 1Y2MA 3GTPA 1WCMA 3U44A 3CQZA 1EZAA 1YNJD 2MQAA 3LR2A 1HQMD 3GTJA 2LTHA 2VUMA 1TWHA 4C2MA 1SMYD 1TWAA 2LPJA 2X0OA 3LR6A 2JA5A 4BAAA 2E2IA 2F5JA 1I50A 1ZYRD 3EZEA 2R93A 1IW7D 2A6ED 2HWGA 3GTLA 2LPIA 4C5SA 2Y0NA 2FIOA 1TWGA 3LR8A 1I6VD 2MP0A 2X0PA 3GTGA 2YU9A 2HROA 2BE5D 3GTQA 2LKMB 2EZCA 4V2QA 2R92A 3GTKA 2FIPA 3NZ4A 4CEHA 2MX9A
chains in the Genus database with same CATH topology
1R9TA 2R7ZA 3LRDA 2JA7A 2MX8A 2K3OA 1I3QA 3U4QA 2E2HA 1YNND 2NVXA 1Y1WA 2CW0D 2N3EA 1TWCA 5IZ2A 2A68D 1TWFA 1Y1VA 2A6HD 2AQLA 2O5JD 2K3NA 3GTOA 2K3QA 4CEIA 2LYIA 3GTMA 2A69D 1K83A 2X0QA 2N1DB 2NVYA 2VK9A 4QIWA 2B63A 4FBSA 3FKIA 3H0GA 1SFOA 2JA6A 4CEJA 3GTPA 1WCMA 3U44A 3CQZA 1YNJD 2MQAA 3LR2A 1HQMD 3GTJA 2LTHA 2VUMA 1TWHA 4C2MA 1SMYD 1TWAA 2LPJA 2X0OA 3LR6A 2JA5A 2E2IA 2F5JA 1I50A 1ZYRD 2R93A 1IW7D 2A6ED 3GTLA 2LPIA 2Y0NA 2FIOA 1TWGA 3LR8A 1I6VD 2X0PA 3GTGA 2YU9A 2BE5D 3GTQA 2LKMB 2R92A 3GTKA 2FIPA 4CEHA 2MX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MQA A;  2K3N A;  2LYI A;  2K3O A; 
#chains in the Genus database with same CATH topology
 1R9T A;  2R7Z A;  4V2R A;  2YII A;  3LRD A;  2JA7 A;  2MX8 A;  2K3O A;  1I3Q A;  3U4Q A;  1T6J A;  1ZYM A;  2EZB A;  2E2H A;  1YNN D;  2NVX A;  4BAB A;  3EZB A;  1Y1W A;  4C5U A;  2CW0 D;  2N3E A;  1TWC A;  5IZ2 A;  2A68 D;  1TWF A;  1Y1V A;  2A6H D;  2AQL A;  2O5J D;  2K3N A;  3GTO A;  1EZB A;  2K3Q A;  4CEI A;  4C6G A;  2LYI A;  3GTM A;  4CQ5 A;  2A69 D;  1K83 A;  2X0Q A;  2N1D B;  2NVY A;  2VK9 A;  4C5R A;  1W27 A;  4QIW A;  2B63 A;  4FBS A;  1T6P A;  3FKI A;  3EZA A;  3H0G A;  1SFO A;  2EZA A;  2JA6 A;  4CEJ A;  1Y2M A;  3GTP A;  1WCM A;  3U44 A;  3CQZ A;  1EZA A;  1YNJ D;  2MQA A;  3LR2 A;  1HQM D;  3GTJ A;  2LTH A;  2VUM A;  1TWH A;  4C2M A;  1SMY D;  1TWA A;  2LPJ A;  2X0O A;  3LR6 A;  2JA5 A;  4BAA A;  2E2I A;  2F5J A;  1I50 A;  1ZYR D;  3EZE A;  2R93 A;  1IW7 D;  2A6E D;  2HWG A;  3GTL A;  2LPI A;  4C5S A;  2Y0N A;  2FIO A;  1TWG A;  3LR8 A;  1I6V D;  2MP0 A;  2X0P A;  3GTG A;  2YU9 A;  2HRO A;  2BE5 D;  3GTQ A;  2LKM B;  2EZC A;  4V2Q A;  2R92 A;  3GTK A;  2FIP A;  3NZ4 A;  4CEH A;  2MX9 A; 
#chains in the Genus database with same CATH homology
 1R9T A;  2R7Z A;  3LRD A;  2JA7 A;  2MX8 A;  2K3O A;  1I3Q A;  3U4Q A;  2E2H A;  1YNN D;  2NVX A;  1Y1W A;  2CW0 D;  2N3E A;  1TWC A;  5IZ2 A;  2A68 D;  1TWF A;  1Y1V A;  2A6H D;  2AQL A;  2O5J D;  2K3N A;  3GTO A;  2K3Q A;  4CEI A;  2LYI A;  3GTM A;  2A69 D;  1K83 A;  2X0Q A;  2N1D B;  2NVY A;  2VK9 A;  4QIW A;  2B63 A;  4FBS A;  3FKI A;  3H0G A;  1SFO A;  2JA6 A;  4CEJ A;  3GTP A;  1WCM A;  3U44 A;  3CQZ A;  1YNJ D;  2MQA A;  3LR2 A;  1HQM D;  3GTJ A;  2LTH A;  2VUM A;  1TWH A;  4C2M A;  1SMY D;  1TWA A;  2LPJ A;  2X0O A;  3LR6 A;  2JA5 A;  2E2I A;  2F5J A;  1I50 A;  1ZYR D;  2R93 A;  1IW7 D;  2A6E D;  3GTL A;  2LPI A;  2Y0N A;  2FIO A;  1TWG A;  3LR8 A;  1I6V D;  2X0P A;  3GTG A;  2YU9 A;  2BE5 D;  3GTQ A;  2LKM B;  2R92 A;  3GTK A;  2FIP A;  4CEH A;  2MX9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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