2N3E | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	137
structure length	137
Chain Sequence	GMGQANTPWSSKANADAFINSFISAASNTGSFSQDQMENMSLIGNTLMAAMDNMGGRITPSKLQALDMAFASSVAQIAASQGGDLGVTTNAIADALTSAFYQTTGVVNSRFISEIRSLIGMFAQASANDVYASAGSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 137 atoms

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137 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Latrodectus hesperus
publication title	High resolution structure of an engineered amino-terminal ampullate spider silk with neutralized charge cluster rcsb
molecule keywords	Major ampullate spidroin 1
total genus	42
structure length	137
sequence length	137
ec nomenclature
pdb deposition date	2015-05-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16763	Spidroin_N	Major ampullate spidroin 1, spider silk protein 1, N-term

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.274.70	Mainly Alpha	Orthogonal Bundle	Enzyme I; Chain A, domain 2	Enzyme I; Chain A, domain 2	2n3eA01

3LR8A 4FBSA 5IZ2A 2LPIA 2MX9A 2N3EA 2MX8A 2K3QA 2LPJA 3LRDA 3LR2A 3LR6A 2LTHA
chains in the Genus database with same CATH superfamily

1TWHA 2A69D 2B63A 4BABA 2A6HD 1IW7D 2LTHA 2O5JD 1I6VD 1ZYMA 3GTLA 3CQZA 2X0PA 2YIIA 4CEJA 3LR6A 2K3OA 4CEIA 5IZ2A 3GTQA 4C2MA 2BE5D 4CQ5A 4CEHA 2MX9A 1R9TA 2LYIA 2X0OA 4BAAA 2MQAA 2EZBA 2Y0NA 3LR2A 1Y1WA 2CW0D 2YU9A 2MX8A 2EZCA 3EZEA 2JA6A 2E2HA 4C6GA 2JA7A 3LR8A 2FIOA 3EZAA 1TWGA 2N3EA 2R93A 3FKIA 1EZAA 2NVXA 2JA5A 3U44A 2HROA 4QIWA 3GTGA 2R92A 1SMYD 1I50A 1K83A 2X0QA 1Y2MA 2F5JA 2N1DB 3H0GA 1TWAA 1SFOA 3GTJA 1WCMA 2LKMB 4FBSA 1YNND 3EZBA 1T6PA 3GTOA 2K3NA 3U4QA 1TWCA 4C5RA 2R7ZA 3GTKA 2VK9A 2VUMA 1TWFA 1EZBA 1ZYRD 2MP0A 3NZ4A 1T6JA 2FIPA 4V2RA 4C5UA 1W27A 2NVYA 1I3QA 3LRDA 4V2QA 2E2IA 1Y1VA 2LPJA 2EZAA 2AQLA 3GTMA 2A6ED 4C5SA 2LPIA 1HQMD 2HWGA 2K3QA 3GTPA 2A68D 1YNJD
chains in the Genus database with same CATH topology

1TWHA 2A69D 2B63A 2A6HD 1IW7D 2LTHA 2O5JD 1I6VD 3GTLA 3CQZA 2X0PA 4CEJA 3LR6A 2K3OA 4CEIA 5IZ2A 3GTQA 4C2MA 2BE5D 4CEHA 2MX9A 1R9TA 2LYIA 2X0OA 2MQAA 2Y0NA 3LR2A 1Y1WA 2CW0D 2YU9A 2MX8A 2JA6A 2E2HA 2JA7A 3LR8A 2FIOA 1TWGA 2N3EA 2R93A 3FKIA 2NVXA 2JA5A 3U44A 4QIWA 3GTGA 2R92A 1SMYD 1I50A 1K83A 2X0QA 2F5JA 2N1DB 3H0GA 1TWAA 1SFOA 3GTJA 1WCMA 2LKMB 1YNND 4FBSA 3GTOA 2K3NA 3U4QA 1TWCA 2R7ZA 3GTKA 2VK9A 2VUMA 1TWFA 1ZYRD 2FIPA 2NVYA 1I3QA 3LRDA 2E2IA 1Y1VA 2LPJA 2AQLA 3GTMA 2A6ED 2LPIA 1HQMD 2K3QA 3GTPA 2A68D 1YNJD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3LR8 A;  4FBS A;  5IZ2 A;  2LPI A;  2MX9 A;  2N3E A;  2MX8 A;  2K3Q A;  2LPJ A;  3LRD A;  3LR2 A;  3LR6 A;  2LTH A; 
#chains in the Genus database with same CATH topology
 1TWH A;  2A69 D;  2B63 A;  4BAB A;  2A6H D;  1IW7 D;  2LTH A;  2O5J D;  1I6V D;  1ZYM A;  3GTL A;  3CQZ A;  2X0P A;  2YII A;  4CEJ A;  3LR6 A;  2K3O A;  4CEI A;  5IZ2 A;  3GTQ A;  4C2M A;  2BE5 D;  4CQ5 A;  4CEH A;  2MX9 A;  1R9T A;  2LYI A;  2X0O A;  4BAA A;  2MQA A;  2EZB A;  2Y0N A;  3LR2 A;  1Y1W A;  2CW0 D;  2YU9 A;  2MX8 A;  2EZC A;  3EZE A;  2JA6 A;  2E2H A;  4C6G A;  2JA7 A;  3LR8 A;  2FIO A;  3EZA A;  1TWG A;  2N3E A;  2R93 A;  3FKI A;  1EZA A;  2NVX A;  2JA5 A;  3U44 A;  2HRO A;  4QIW A;  3GTG A;  2R92 A;  1SMY D;  1I50 A;  1K83 A;  2X0Q A;  1Y2M A;  2F5J A;  2N1D B;  3H0G A;  1TWA A;  1SFO A;  3GTJ A;  1WCM A;  2LKM B;  4FBS A;  1YNN D;  3EZB A;  1T6P A;  3GTO A;  2K3N A;  3U4Q A;  1TWC A;  4C5R A;  2R7Z A;  3GTK A;  2VK9 A;  2VUM A;  1TWF A;  1EZB A;  1ZYR D;  2MP0 A;  3NZ4 A;  1T6J A;  2FIP A;  4V2R A;  4C5U A;  1W27 A;  2NVY A;  1I3Q A;  3LRD A;  4V2Q A;  2E2I A;  1Y1V A;  2LPJ A;  2EZA A;  2AQL A;  3GTM A;  2A6E D;  4C5S A;  2LPI A;  1HQM D;  2HWG A;  2K3Q A;  3GTP A;  2A68 D;  1YNJ D; 
#chains in the Genus database with same CATH homology
 1TWH A;  2A69 D;  2B63 A;  2A6H D;  1IW7 D;  2LTH A;  2O5J D;  1I6V D;  3GTL A;  3CQZ A;  2X0P A;  4CEJ A;  3LR6 A;  2K3O A;  4CEI A;  5IZ2 A;  3GTQ A;  4C2M A;  2BE5 D;  4CEH A;  2MX9 A;  1R9T A;  2LYI A;  2X0O A;  2MQA A;  2Y0N A;  3LR2 A;  1Y1W A;  2CW0 D;  2YU9 A;  2MX8 A;  2JA6 A;  2E2H A;  2JA7 A;  3LR8 A;  2FIO A;  1TWG A;  2N3E A;  2R93 A;  3FKI A;  2NVX A;  2JA5 A;  3U44 A;  4QIW A;  3GTG A;  2R92 A;  1SMY D;  1I50 A;  1K83 A;  2X0Q A;  2F5J A;  2N1D B;  3H0G A;  1TWA A;  1SFO A;  3GTJ A;  1WCM A;  2LKM B;  1YNN D;  4FBS A;  3GTO A;  2K3N A;  3U4Q A;  1TWC A;  2R7Z A;  3GTK A;  2VK9 A;  2VUM A;  1TWF A;  1ZYR D;  2FIP A;  2NVY A;  1I3Q A;  3LRD A;  2E2I A;  1Y1V A;  2LPJ A;  2AQL A;  3GTM A;  2A6E D;  2LPI A;  1HQM D;  2K3Q A;  3GTP A;  2A68 D;  1YNJ D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2N3EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations