2OZ9R

E. coli trp holorepressor, orthorhombic crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
104
structure length
104
Chain Sequence
SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Escherichia coli
molecule keywords Trp operon repressor
total genus 35
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2007-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 2oz9R00
1CO0A 1JHGA 3WRPA 1WRPR 2OZ9R 3FRWA 2XDIA 3KORA 3SSXN 1TROA 1TRRA 1ZT9A 3G1CA 1WRSR 1WRTR 3SSWN 1RCSA 1MI7R
chains in the Genus database with same CATH superfamily
1CO0A 1JHGA 4YQCA 4YQQA 1WRPR 3QUVA 4YPWA 4YQLA 1OY5A 4YQOA 4YQAA 5D9FA 1UAKA 1UALA 3KNUA 4YQ9A 3AXZA 4YQ6A 4YQ0A 4YVGA 4YQ5A 4YPYA 3WRPA 4YVHA 4YQGA 4YQJA 1TRRA 4H3YA 1WRSR 1WRTR 4YQTA 3SSWN 4MCCA 4YPXA 1MI7R 4YQ3A 3IEFA 4YVJA 2XDIA 3KORA 4YQ1A 4YQRA 4MCBA 4YQ4A 3G1CA 4YQBA 4YQNA 4YQ8A 4YPZA 4YQKA 3KY7A 1TROA 1UAJA 4YQSA 4YQ7A 4H3ZA 2OZ9R 3FRWA 4YQDA 4YQIA 4YQPA 4YVKA 4YVIA 3SSXN 4YQ2A 1UAMA 1ZT9A 4MCDA 4IG6A 1RCSA 1P9PA
chains in the Genus database with same CATH topology
1CO0A 1JHGA 3WRPA 1WRPR 2OZ9R 3FRWA 2XDIA 3KORA 3SSXN 1TROA 1TRRA 1ZT9A 3G1CA 1WRSR 1WRTR 3SSWN 1RCSA 1MI7R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CO0 A;  1JHG A;  3WRP A;  1WRP R;  2OZ9 R;  3FRW A;  2XDI A;  3KOR A;  3SSX N;  1TRO A;  1TRR A;  1ZT9 A;  3G1C A;  1WRS R;  1WRT R;  3SSW N;  1RCS A;  1MI7 R; 
#chains in the Genus database with same CATH topology
 1CO0 A;  1JHG A;  4YQC A;  4YQQ A;  1WRP R;  3QUV A;  4YPW A;  4YQL A;  1OY5 A;  4YQO A;  4YQA A;  5D9F A;  1UAK A;  1UAL A;  3KNU A;  4YQ9 A;  3AXZ A;  4YQ6 A;  4YQ0 A;  4YVG A;  4YQ5 A;  4YPY A;  3WRP A;  4YVH A;  4YQG A;  4YQJ A;  1TRR A;  4H3Y A;  1WRS R;  1WRT R;  4YQT A;  3SSW N;  4MCC A;  4YPX A;  1MI7 R;  4YQ3 A;  3IEF A;  4YVJ A;  2XDI A;  3KOR A;  4YQ1 A;  4YQR A;  4MCB A;  4YQ4 A;  3G1C A;  4YQB A;  4YQN A;  4YQ8 A;  4YPZ A;  4YQK A;  3KY7 A;  1TRO A;  1UAJ A;  4YQS A;  4YQ7 A;  4H3Z A;  2OZ9 R;  3FRW A;  4YQD A;  4YQI A;  4YQP A;  4YVK A;  4YVI A;  3SSX N;  4YQ2 A;  1UAM A;  1ZT9 A;  4MCD A;  4IG6 A;  1RCS A;  1P9P A; 
#chains in the Genus database with same CATH homology
 1CO0 A;  1JHG A;  3WRP A;  1WRP R;  2OZ9 R;  3FRW A;  2XDI A;  3KOR A;  3SSX N;  1TRO A;  1TRR A;  1ZT9 A;  3G1C A;  1WRS R;  1WRT R;  3SSW N;  1RCS A;  1MI7 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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