2OZ9R

E. coli trp holorepressor, orthorhombic crystal form
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
104
structure length
104
Chain Sequence
SPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
molecule tags Dna binding protein
source organism Escherichia coli
molecule keywords Trp operon repressor
total genus 35
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2007-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 2oz9R00
1WRTR 2OZ9R 1WRSR 3FRWA 1ZT9A 3KORA 3SSXN 3WRPA 1MI7R 3SSWN 1RCSA 1TRRA 1WRPR 2XDIA 3G1CA 1JHGA 1TROA 1CO0A
chains in the Genus database with same CATH superfamily
4YPXA 4YQ3A 4YQ5A 4YQLA 4MCDA 3SSWN 1WRPR 3KNUA 4YQJA 3G1CA 4YQDA 4YQQA 4YQ0A 4YQKA 3AXZA 4YQPA 4YQRA 4MCCA 1TROA 4YQ7A 4YQNA 4IG6A 3FRWA 4YVIA 1ZT9A 1UAJA 3QUVA 3SSXN 4YQIA 4YQ6A 1RCSA 1TRRA 4YVKA 4MCBA 4YQ1A 4YVJA 1WRTR 4YVGA 4YVHA 4YQ4A 1WRSR 3KORA 4YQ8A 1MI7R 4YPWA 4YQBA 4H3ZA 1JHGA 4YQGA 4YQAA 1UAKA 1P9PA 1UAMA 4YQOA 1CO0A 3IEFA 4YPYA 2OZ9R 4YQSA 4H3YA 4YPZA 3WRPA 1OY5A 4YQCA 5D9FA 2XDIA 4YQTA 4YQ2A 1UALA 4YQ9A 3KY7A
chains in the Genus database with same CATH topology
1WRTR 2OZ9R 1WRSR 3FRWA 1ZT9A 3KORA 3SSXN 3WRPA 1MI7R 3SSWN 1RCSA 1TRRA 1WRPR 2XDIA 3G1CA 1JHGA 1TROA 1CO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WRT R;  2OZ9 R;  1WRS R;  3FRW A;  1ZT9 A;  3KOR A;  3SSX N;  3WRP A;  1MI7 R;  3SSW N;  1RCS A;  1TRR A;  1WRP R;  2XDI A;  3G1C A;  1JHG A;  1TRO A;  1CO0 A; 
#chains in the Genus database with same CATH topology
 4YPX A;  4YQ3 A;  4YQ5 A;  4YQL A;  4MCD A;  3SSW N;  1WRP R;  3KNU A;  4YQJ A;  3G1C A;  4YQD A;  4YQQ A;  4YQ0 A;  4YQK A;  3AXZ A;  4YQP A;  4YQR A;  4MCC A;  1TRO A;  4YQ7 A;  4YQN A;  4IG6 A;  3FRW A;  4YVI A;  1ZT9 A;  1UAJ A;  3QUV A;  3SSX N;  4YQI A;  4YQ6 A;  1RCS A;  1TRR A;  4YVK A;  4MCB A;  4YQ1 A;  4YVJ A;  1WRT R;  4YVG A;  4YVH A;  4YQ4 A;  1WRS R;  3KOR A;  4YQ8 A;  1MI7 R;  4YPW A;  4YQB A;  4H3Z A;  1JHG A;  4YQG A;  4YQA A;  1UAK A;  1P9P A;  1UAM A;  4YQO A;  1CO0 A;  3IEF A;  4YPY A;  2OZ9 R;  4YQS A;  4H3Y A;  4YPZ A;  3WRP A;  1OY5 A;  4YQC A;  5D9F A;  2XDI A;  4YQT A;  4YQ2 A;  1UAL A;  4YQ9 A;  3KY7 A; 
#chains in the Genus database with same CATH homology
 1WRT R;  2OZ9 R;  1WRS R;  3FRW A;  1ZT9 A;  3KOR A;  3SSX N;  3WRP A;  1MI7 R;  3SSW N;  1RCS A;  1TRR A;  1WRP R;  2XDI A;  3G1C A;  1JHG A;  1TRO A;  1CO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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