2P63A

Suprafacial orientation of the scfcdc4 dimer accommodates multiple geometries for substrate ubiquitination
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
52
structure length
52
Chain Sequence
GSPEYLSDEIFSAINNNLPHAYFKNLLFRLVANMDRSELSDLGTLIKDNLKR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Cell cycle
molecule keywords Cell division control protein 4
publication title Suprafacial orientation of the SCFCdc4 dimer accommodates multiple geometries for substrate ubiquitination.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 17
structure length 52
sequence length 52
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16856 CDC4_D Cell division control protein 4 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.12.50 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 2p63A01
2P63A
chains in the Genus database with same CATH superfamily
1DCIA 1NZYA 4I42A 3H02A 2GTRA 1EF8A 3TRRA 4GEHB 4K2NA 4FZWC 3PZKA 4F47A 4K3WA 4QIIA 3ADDA 1EY3A 3SWXA 3A4MA 3A4LA 1WZ8A 1NZYB 2VX2A 1UIYA 5C9GA 1MJ3A 1DUBA 1HZDA 3R9TA 3P5MA 3A4NA 4JCSA 3RQEA 5JBXA 3H81A 3L8IA 3ADCA 3QXIA 4JFCA 4IZBA 4OG1A 4ELSA 3RQFA 3OC7A 3W8IB 3QK8A 4IZCA 3IRBA 2HW5A 4MOUA 3T8AA 4U1AA 2EJ5A 3MOYA 4FJWD 4OLQA 3HRXA 3SLLA 4ELWA 3AM1A 3T88A 2UZFA 4ZU2A 3L8JA 3R0OA 5KJPA 4ELXA 4I52A 2ZQQA 2DUBA 3QXZA 4EMLA 1Y64B 2PPYA 2FBMA 2QQ3A 4KNPA 3W8HB 3G64A 3Q1TA 4JYLA 2P63A 3TLFA 3RQGA 4U18A 4IZDA 5JBWA 3Q0GA 4NNQA 4QIJA 1EF9A 4MI2A 2F6QA 4U19A 4JOTA 4I4ZA 3O4XE 3MYBA 3FDUA 1JXZA 3ADBA 3I47A 4NEKA 2VREA 3HINA 1RJNA 1UX4A 3RSIA 3R9SA 1RJMA 2ZQRA 1UX5A 4WCZA 3KQFA 1Q51A 4JWVA 3AJMA 2PBPA 1Q52A 2IEXA 3T89A 2FW2A 4FZWA 3Q0JA
chains in the Genus database with same CATH topology
3L8JA 3A4NA 3RQEA 3ADBA 3L8IA 3ADCA 1Y64B 1UX4A 3RQFA 3W8HB 1RJMA 3IRBA 4GEHB 1UX5A 2P63A 3RQGA 3ADDA 3AJMA 4NNQA 3AM1A 3A4MA 3A4LA 3W8IB 3O4XE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P63 A; 
#chains in the Genus database with same CATH topology
 1DCI A;  1NZY A;  4I42 A;  3H02 A;  2GTR A;  1EF8 A;  3TRR A;  4GEH B;  4K2N A;  4FZW C;  3PZK A;  4F47 A;  4K3W A;  4QII A;  3ADD A;  1EY3 A;  3SWX A;  3A4M A;  3A4L A;  1WZ8 A;  1NZY B;  2VX2 A;  1UIY A;  5C9G A;  1MJ3 A;  1DUB A;  1HZD A;  3R9T A;  3P5M A;  3A4N A;  4JCS A;  3RQE A;  5JBX A;  3H81 A;  3L8I A;  3ADC A;  3QXI A;  4JFC A;  4IZB A;  4OG1 A;  4ELS A;  3RQF A;  3OC7 A;  3W8I B;  3QK8 A;  4IZC A;  3IRB A;  2HW5 A;  4MOU A;  3T8A A;  4U1A A;  2EJ5 A;  3MOY A;  4FJW D;  4OLQ A;  3HRX A;  3SLL A;  4ELW A;  3AM1 A;  3T88 A;  2UZF A;  4ZU2 A;  3L8J A;  3R0O A;  5KJP A;  4ELX A;  4I52 A;  2ZQQ A;  2DUB A;  3QXZ A;  4EML A;  1Y64 B;  2PPY A;  2FBM A;  2QQ3 A;  4KNP A;  3W8H B;  3G64 A;  3Q1T A;  4JYL A;  2P63 A;  3TLF A;  3RQG A;  4U18 A;  4IZD A;  5JBW A;  3Q0G A;  4NNQ A;  4QIJ A;  1EF9 A;  4MI2 A;  2F6Q A;  4U19 A;  4JOT A;  4I4Z A;  3O4X E;  3MYB A;  3FDU A;  1JXZ A;  3ADB A;  3I47 A;  4NEK A;  2VRE A;  3HIN A;  1RJN A;  1UX4 A;  3RSI A;  3R9S A;  1RJM A;  2ZQR A;  1UX5 A;  4WCZ A;  3KQF A;  1Q51 A;  4JWV A;  3AJM A;  2PBP A;  1Q52 A;  2IEX A;  3T89 A;  2FW2 A;  4FZW A;  3Q0J A; 
#chains in the Genus database with same CATH homology
 3L8J A;  3A4N A;  3RQE A;  3ADB A;  3L8I A;  3ADC A;  1Y64 B;  1UX4 A;  3RQF A;  3W8H B;  1RJM A;  3IRB A;  4GEH B;  1UX5 A;  2P63 A;  3RQG A;  3ADD A;  3AJM A;  4NNQ A;  3AM1 A;  3A4M A;  3A4L A;  3W8I B;  3O4X E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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