3G1CA

The crystal structure of a trpr like protein from eubacterium eligens atcc 27750
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
97
structure length
97
Chain Sequence
NNKLKTQAVEQLFQAILSLKDLDEAYDFFEDVCTINEILSLSQRFEVAKMLREHRTYLDIAEKTGASTATISRVNRSLNYGNDGYDRVFERLGMLEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of a TrpR like protein from Eubacterium eligens ATCC 27750
rcsb
molecule tags Transcription, dna binding protein
source organism Eubacterium eligens
molecule keywords The TrpR like protein from Eubacterium eligens ATCC 27750
total genus 36
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2009-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3g1cA00
3SSWN 2OZ9R 1WRSR 3WRPA 1WRPR 1MI7R 3SSXN 1CO0A 2XDIA 3G1CA 1TRRA 3FRWA 1RCSA 3KORA 1ZT9A 1TROA 1WRTR 1JHGA
chains in the Genus database with same CATH superfamily
4YPZA 5D9FA 4YQ8A 4YVKA 3SSXN 4YQCA 4YQQA 1UALA 3FRWA 4MCCA 1TRRA 1TROA 1UAMA 4MCBA 4YQKA 4YQPA 1WRSR 3WRPA 4YQ0A 4YQ4A 1MI7R 1P9PA 4YQGA 2XDIA 4YPYA 4YQBA 1RCSA 4MCDA 3KY7A 3SSWN 4H3ZA 4YVGA 4YQ6A 4YQTA 1WRPR 4YQDA 4YQ7A 1CO0A 4YQAA 4YQ9A 1UAKA 4YQSA 4YVHA 4YQLA 1ZT9A 3IEFA 4YQ2A 3QUVA 4YQNA 4YQRA 4IG6A 4YQJA 4YQOA 4YQ1A 4YPWA 2OZ9R 1UAJA 4YVIA 3AXZA 4YPXA 4YQ3A 3KNUA 4YQIA 3G1CA 4YQ5A 1OY5A 3KORA 4YVJA 4H3YA 1WRTR 1JHGA
chains in the Genus database with same CATH topology
3SSWN 2OZ9R 1WRSR 3WRPA 1WRPR 1MI7R 3SSXN 1CO0A 2XDIA 3G1CA 1TRRA 3FRWA 1RCSA 3KORA 1ZT9A 1TROA 1WRTR 1JHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SSW N;  2OZ9 R;  1WRS R;  3WRP A;  1WRP R;  1MI7 R;  3SSX N;  1CO0 A;  2XDI A;  3G1C A;  1TRR A;  3FRW A;  1RCS A;  3KOR A;  1ZT9 A;  1TRO A;  1WRT R;  1JHG A; 
#chains in the Genus database with same CATH topology
 4YPZ A;  5D9F A;  4YQ8 A;  4YVK A;  3SSX N;  4YQC A;  4YQQ A;  1UAL A;  3FRW A;  4MCC A;  1TRR A;  1TRO A;  1UAM A;  4MCB A;  4YQK A;  4YQP A;  1WRS R;  3WRP A;  4YQ0 A;  4YQ4 A;  1MI7 R;  1P9P A;  4YQG A;  2XDI A;  4YPY A;  4YQB A;  1RCS A;  4MCD A;  3KY7 A;  3SSW N;  4H3Z A;  4YVG A;  4YQ6 A;  4YQT A;  1WRP R;  4YQD A;  4YQ7 A;  1CO0 A;  4YQA A;  4YQ9 A;  1UAK A;  4YQS A;  4YVH A;  4YQL A;  1ZT9 A;  3IEF A;  4YQ2 A;  3QUV A;  4YQN A;  4YQR A;  4IG6 A;  4YQJ A;  4YQO A;  4YQ1 A;  4YPW A;  2OZ9 R;  1UAJ A;  4YVI A;  3AXZ A;  4YPX A;  4YQ3 A;  3KNU A;  4YQI A;  3G1C A;  4YQ5 A;  1OY5 A;  3KOR A;  4YVJ A;  4H3Y A;  1WRT R;  1JHG A; 
#chains in the Genus database with same CATH homology
 3SSW N;  2OZ9 R;  1WRS R;  3WRP A;  1WRP R;  1MI7 R;  3SSX N;  1CO0 A;  2XDI A;  3G1C A;  1TRR A;  3FRW A;  1RCS A;  3KOR A;  1ZT9 A;  1TRO A;  1WRT R;  1JHG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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