3KORA

Crystal structure of a putative trp repressor from staphylococcus aureus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
100
structure length
100
Chain Sequence
SMQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative Trp repressor from Staphylococcus aureus
rcsb
molecule tags Transcription
source organism Staphylococcus aureus
molecule keywords Possible Trp repressor
total genus 30
structure length 100
sequence length 100
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3korA00
1JHGA 3KORA 3G1CA 1TRRA 1ZT9A 3FRWA 3SSWN 1WRPR 1TROA 1CO0A 1MI7R 3WRPA 3SSXN 1RCSA 1WRSR 2OZ9R 2XDIA 1WRTR
chains in the Genus database with same CATH superfamily
3KORA 4YQKA 4YQ6A 1OY5A 4YQJA 5D9FA 4YQ4A 4MCCA 1UALA 4YQPA 4H3ZA 4YQCA 1UAMA 2XDIA 4YQIA 1WRTR 3G1CA 4YQ2A 4YQOA 4YVKA 1TROA 4YQ0A 1CO0A 4YQSA 4YQ3A 4YQTA 1UAKA 4YQ8A 4YVHA 3SSXN 4YPZA 4YQRA 1JHGA 4YQ1A 1P9PA 3QUVA 3SSWN 4YPYA 3AXZA 4YQ5A 4YQ9A 4YQ7A 4YVJA 3IEFA 3KNUA 4MCDA 4IG6A 4YPWA 4YQQA 1WRSR 4YQLA 4YVIA 4H3YA 4YQDA 1TRRA 4YVGA 1ZT9A 4MCBA 4YQNA 1WRPR 4YQBA 3KY7A 1UAJA 4YQGA 1RCSA 1MI7R 3WRPA 4YQAA 2OZ9R 4YPXA 3FRWA
chains in the Genus database with same CATH topology
1JHGA 3KORA 3G1CA 1TRRA 1ZT9A 3FRWA 3SSWN 1WRPR 1TROA 1CO0A 1MI7R 3WRPA 3SSXN 1RCSA 1WRSR 2OZ9R 2XDIA 1WRTR
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JHG A;  3KOR A;  3G1C A;  1TRR A;  1ZT9 A;  3FRW A;  3SSW N;  1WRP R;  1TRO A;  1CO0 A;  1MI7 R;  3WRP A;  3SSX N;  1RCS A;  1WRS R;  2OZ9 R;  2XDI A;  1WRT R; 
#chains in the Genus database with same CATH topology
 3KOR A;  4YQK A;  4YQ6 A;  1OY5 A;  4YQJ A;  5D9F A;  4YQ4 A;  4MCC A;  1UAL A;  4YQP A;  4H3Z A;  4YQC A;  1UAM A;  2XDI A;  4YQI A;  1WRT R;  3G1C A;  4YQ2 A;  4YQO A;  4YVK A;  1TRO A;  4YQ0 A;  1CO0 A;  4YQS A;  4YQ3 A;  4YQT A;  1UAK A;  4YQ8 A;  4YVH A;  3SSX N;  4YPZ A;  4YQR A;  1JHG A;  4YQ1 A;  1P9P A;  3QUV A;  3SSW N;  4YPY A;  3AXZ A;  4YQ5 A;  4YQ9 A;  4YQ7 A;  4YVJ A;  3IEF A;  3KNU A;  4MCD A;  4IG6 A;  4YPW A;  4YQQ A;  1WRS R;  4YQL A;  4YVI A;  4H3Y A;  4YQD A;  1TRR A;  4YVG A;  1ZT9 A;  4MCB A;  4YQN A;  1WRP R;  4YQB A;  3KY7 A;  1UAJ A;  4YQG A;  1RCS A;  1MI7 R;  3WRP A;  4YQA A;  2OZ9 R;  4YPX A;  3FRW A; 
#chains in the Genus database with same CATH homology
 1JHG A;  3KOR A;  3G1C A;  1TRR A;  1ZT9 A;  3FRW A;  3SSW N;  1WRP R;  1TRO A;  1CO0 A;  1MI7 R;  3WRP A;  3SSX N;  1RCS A;  1WRS R;  2OZ9 R;  2XDI A;  1WRT R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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