3KORA

Crystal structure of a putative trp repressor from staphylococcus aureus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
100
structure length
100
Chain Sequence
SMQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative Trp repressor from Staphylococcus aureus
rcsb
molecule tags Transcription
source organism Staphylococcus aureus
molecule keywords Possible Trp repressor
total genus 30
structure length 100
sequence length 100
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3korA00
1TROA 2OZ9R 3KORA 3SSXN 1WRPR 3SSWN 1TRRA 2XDIA 3FRWA 1MI7R 1WRSR 1ZT9A 1WRTR 1RCSA 1JHGA 3G1CA 3WRPA 1CO0A
chains in the Genus database with same CATH superfamily
3KNUA 4YQ6A 4YQ0A 4YQ2A 4YQRA 1TRRA 4YPWA 1MI7R 3KY7A 1JHGA 1UAMA 4YQPA 4YQBA 3SSXN 5D9FA 4YQ1A 4YVJA 4YQAA 4YQ7A 3QUVA 2XDIA 4YPYA 4YQGA 4YQDA 1WRTR 4IG6A 4MCBA 2OZ9R 4YQ5A 4MCCA 4YVIA 1WRPR 3SSWN 1UAKA 4H3YA 4YQJA 4YQNA 4YQ3A 1ZT9A 4MCDA 1UAJA 4YQLA 4YQCA 3G1CA 4YQSA 4YQOA 3WRPA 1CO0A 1TROA 3KORA 4YPXA 1OY5A 3AXZA 4YVHA 1P9PA 4YQKA 4YQIA 4H3ZA 4YQ8A 4YQ4A 3FRWA 4YQTA 1UALA 1WRSR 3IEFA 4YQ9A 4YVGA 4YVKA 1RCSA 4YPZA 4YQQA
chains in the Genus database with same CATH topology
1TROA 2OZ9R 3KORA 3SSXN 1WRPR 3SSWN 1TRRA 2XDIA 3FRWA 1MI7R 1WRSR 1ZT9A 1WRTR 1RCSA 1JHGA 3G1CA 3WRPA 1CO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TRO A;  2OZ9 R;  3KOR A;  3SSX N;  1WRP R;  3SSW N;  1TRR A;  2XDI A;  3FRW A;  1MI7 R;  1WRS R;  1ZT9 A;  1WRT R;  1RCS A;  1JHG A;  3G1C A;  3WRP A;  1CO0 A; 
#chains in the Genus database with same CATH topology
 3KNU A;  4YQ6 A;  4YQ0 A;  4YQ2 A;  4YQR A;  1TRR A;  4YPW A;  1MI7 R;  3KY7 A;  1JHG A;  1UAM A;  4YQP A;  4YQB A;  3SSX N;  5D9F A;  4YQ1 A;  4YVJ A;  4YQA A;  4YQ7 A;  3QUV A;  2XDI A;  4YPY A;  4YQG A;  4YQD A;  1WRT R;  4IG6 A;  4MCB A;  2OZ9 R;  4YQ5 A;  4MCC A;  4YVI A;  1WRP R;  3SSW N;  1UAK A;  4H3Y A;  4YQJ A;  4YQN A;  4YQ3 A;  1ZT9 A;  4MCD A;  1UAJ A;  4YQL A;  4YQC A;  3G1C A;  4YQS A;  4YQO A;  3WRP A;  1CO0 A;  1TRO A;  3KOR A;  4YPX A;  1OY5 A;  3AXZ A;  4YVH A;  1P9P A;  4YQK A;  4YQI A;  4H3Z A;  4YQ8 A;  4YQ4 A;  3FRW A;  4YQT A;  1UAL A;  1WRS R;  3IEF A;  4YQ9 A;  4YVG A;  4YVK A;  1RCS A;  4YPZ A;  4YQQ A; 
#chains in the Genus database with same CATH homology
 1TRO A;  2OZ9 R;  3KOR A;  3SSX N;  1WRP R;  3SSW N;  1TRR A;  2XDI A;  3FRW A;  1MI7 R;  1WRS R;  1ZT9 A;  1WRT R;  1RCS A;  1JHG A;  3G1C A;  3WRP A;  1CO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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