3KORA

Crystal structure of a putative trp repressor from staphylococcus aureus
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
100
structure length
100
Chain Sequence
SMQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRSLQWGNDAYTMILDRMNIETN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a putative Trp repressor from Staphylococcus aureus
rcsb
molecule tags Transcription
source organism Staphylococcus aureus
molecule keywords Possible Trp repressor
total genus 30
structure length 100
sequence length 100
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-11-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3korA00
2OZ9R 1WRTR 3SSXN 3KORA 1MI7R 2XDIA 1ZT9A 1TROA 3G1CA 1TRRA 1WRSR 1JHGA 1CO0A 3WRPA 3SSWN 3FRWA 1WRPR 1RCSA
chains in the Genus database with same CATH superfamily
1UAKA 4H3YA 3QUVA 4YQQA 3AXZA 4YPYA 5D9FA 1TROA 4YQOA 4YQ4A 1UALA 4YQ9A 1CO0A 1UAMA 4YQGA 3IEFA 4MCBA 4YQKA 4YQDA 4IG6A 4YQ7A 4YQCA 4YQAA 4YVJA 4YVKA 4YVGA 4MCCA 4YVHA 1UAJA 4YQRA 1WRSR 1P9PA 4YQ3A 4YPXA 3WRPA 4YQ5A 4YQPA 3SSWN 1OY5A 3KORA 4YQ0A 4YQJA 3KNUA 4YQTA 1WRTR 4YPWA 1MI7R 2XDIA 4YQNA 4YQBA 4YQ2A 3G1CA 1TRRA 1JHGA 3KY7A 4YQSA 1WRPR 1RCSA 2OZ9R 4YQ8A 4YQLA 4H3ZA 4YQ1A 1ZT9A 4YQ6A 4MCDA 4YPZA 4YVIA 3SSXN 3FRWA 4YQIA
chains in the Genus database with same CATH topology
2OZ9R 1WRTR 3SSXN 3KORA 1MI7R 2XDIA 1ZT9A 1TROA 3G1CA 1TRRA 1WRSR 1JHGA 1CO0A 3WRPA 3SSWN 3FRWA 1WRPR 1RCSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ9 R;  1WRT R;  3SSX N;  3KOR A;  1MI7 R;  2XDI A;  1ZT9 A;  1TRO A;  3G1C A;  1TRR A;  1WRS R;  1JHG A;  1CO0 A;  3WRP A;  3SSW N;  3FRW A;  1WRP R;  1RCS A; 
#chains in the Genus database with same CATH topology
 1UAK A;  4H3Y A;  3QUV A;  4YQQ A;  3AXZ A;  4YPY A;  5D9F A;  1TRO A;  4YQO A;  4YQ4 A;  1UAL A;  4YQ9 A;  1CO0 A;  1UAM A;  4YQG A;  3IEF A;  4MCB A;  4YQK A;  4YQD A;  4IG6 A;  4YQ7 A;  4YQC A;  4YQA A;  4YVJ A;  4YVK A;  4YVG A;  4MCC A;  4YVH A;  1UAJ A;  4YQR A;  1WRS R;  1P9P A;  4YQ3 A;  4YPX A;  3WRP A;  4YQ5 A;  4YQP A;  3SSW N;  1OY5 A;  3KOR A;  4YQ0 A;  4YQJ A;  3KNU A;  4YQT A;  1WRT R;  4YPW A;  1MI7 R;  2XDI A;  4YQN A;  4YQB A;  4YQ2 A;  3G1C A;  1TRR A;  1JHG A;  3KY7 A;  4YQS A;  1WRP R;  1RCS A;  2OZ9 R;  4YQ8 A;  4YQL A;  4H3Z A;  4YQ1 A;  1ZT9 A;  4YQ6 A;  4MCD A;  4YPZ A;  4YVI A;  3SSX N;  3FRW A;  4YQI A; 
#chains in the Genus database with same CATH homology
 2OZ9 R;  1WRT R;  3SSX N;  3KOR A;  1MI7 R;  2XDI A;  1ZT9 A;  1TRO A;  3G1C A;  1TRR A;  1WRS R;  1JHG A;  1CO0 A;  3WRP A;  3SSW N;  3FRW A;  1WRP R;  1RCS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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