3LR8 | Genus

Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	131
structure length	131
Chain Sequence	GSGNSHTTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMAFASSMAQIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQAG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cff7deabb69de7ddae024b6/pdb.gz): 988 ms

reading 131 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

131 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:130});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Euprosthenops australis
publication title	Self-assembly of spider silk proteins is controlled by a pH-sensitive relay. pubmed doi rcsb
molecule keywords	Major ampullate spidroin 1
total genus	53
structure length	131
sequence length	131
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-02-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16763	Spidroin_N	Major ampullate spidroin 1, spider silk protein 1, N-term

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.274.70	Mainly Alpha	Orthogonal Bundle	Enzyme I; Chain A, domain 2	Enzyme I; Chain A, domain 2	3lr8A01

3LR8A 2MX9A 2LPJA 3LR2A 4FBSA 5IZ2A 2K3QA 3LRDA 3LR6A 2LTHA 2LPIA 2MX8A 2N3EA
chains in the Genus database with same CATH superfamily

4C5UA 2JA6A 1TWAA 4QIWA 3GTKA 2A69D 3GTPA 4C5RA 3U4QA 2EZAA 2E2IA 1W27A 2B63A 2FIOA 3EZEA 1WCMA 3CQZA 2K3NA 2X0QA 3GTMA 1Y1WA 3NZ4A 2EZBA 3GTJA 3GTLA 4V2QA 4BAAA 2O5JD 1TWHA 1I3QA 2MX9A 2A6HD 2YIIA 3LR6A 2A6ED 2NVXA 4C2MA 2LPJA 2Y0NA 1TWGA 2X0PA 3EZBA 2VUMA 2X0OA 4CEJA 2HROA 2HWGA 3GTQA 2LTHA 3FKIA 2JA5A 2E2HA 2LYIA 2FIPA 4FBSA 1YNND 4CEHA 4CQ5A 4BABA 2NVYA 2N3EA 2K3OA 3GTGA 3H0GA 2CW0D 2A68D 1SFOA 1I6VD 5IZ2A 4C6GA 2K3QA 4CEIA 2F5JA 2R93A 2MP0A 1HQMD 2MQAA 3EZAA 1K83A 3LR8A 4V2RA 2BE5D 2LKMB 3GTOA 3LRDA 2AQLA 1T6PA 2EZCA 1EZBA 2JA7A 1TWCA 1R9TA 1ZYMA 2R92A 2YU9A 2VK9A 1IW7D 1Y1VA 1EZAA 2N1DB 1Y2MA 1TWFA 1ZYRD 2LPIA 4C5SA 1I50A 2R7ZA 3LR2A 3U44A 1SMYD 1T6JA 1YNJD 2MX8A
chains in the Genus database with same CATH topology

2JA6A 1TWAA 4QIWA 3GTKA 2A69D 3GTPA 3U4QA 2E2IA 2B63A 2FIOA 1WCMA 3CQZA 2K3NA 2X0QA 3GTMA 1Y1WA 3GTJA 3GTLA 2O5JD 1TWHA 1I3QA 2MX9A 2A6HD 3LR6A 2A6ED 2NVXA 4C2MA 2LPJA 2Y0NA 1TWGA 2X0PA 2VUMA 2X0OA 4CEJA 3GTQA 2LTHA 3FKIA 2JA5A 2E2HA 2LYIA 2FIPA 4FBSA 1YNND 4CEHA 2NVYA 2N3EA 2K3OA 3GTGA 3H0GA 2CW0D 2A68D 1SFOA 1I6VD 5IZ2A 2K3QA 4CEIA 2F5JA 2R93A 1HQMD 2MQAA 1K83A 3LR8A 2BE5D 3GTOA 2LKMB 3LRDA 2AQLA 2JA7A 1TWCA 1R9TA 2R92A 2YU9A 2VK9A 1Y1VA 1IW7D 2N1DB 1TWFA 1ZYRD 2LPIA 1I50A 2R7ZA 3LR2A 3U44A 1SMYD 1YNJD 2MX8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3LR8 A;  2MX9 A;  2LPJ A;  3LR2 A;  4FBS A;  5IZ2 A;  2K3Q A;  3LRD A;  3LR6 A;  2LTH A;  2LPI A;  2MX8 A;  2N3E A; 
#chains in the Genus database with same CATH topology
 4C5U A;  2JA6 A;  1TWA A;  4QIW A;  3GTK A;  2A69 D;  3GTP A;  4C5R A;  3U4Q A;  2EZA A;  2E2I A;  1W27 A;  2B63 A;  2FIO A;  3EZE A;  1WCM A;  3CQZ A;  2K3N A;  2X0Q A;  3GTM A;  1Y1W A;  3NZ4 A;  2EZB A;  3GTJ A;  3GTL A;  4V2Q A;  4BAA A;  2O5J D;  1TWH A;  1I3Q A;  2MX9 A;  2A6H D;  2YII A;  3LR6 A;  2A6E D;  2NVX A;  4C2M A;  2LPJ A;  2Y0N A;  1TWG A;  2X0P A;  3EZB A;  2VUM A;  2X0O A;  4CEJ A;  2HRO A;  2HWG A;  3GTQ A;  2LTH A;  3FKI A;  2JA5 A;  2E2H A;  2LYI A;  2FIP A;  4FBS A;  1YNN D;  4CEH A;  4CQ5 A;  4BAB A;  2NVY A;  2N3E A;  2K3O A;  3GTG A;  3H0G A;  2CW0 D;  2A68 D;  1SFO A;  1I6V D;  5IZ2 A;  4C6G A;  2K3Q A;  4CEI A;  2F5J A;  2R93 A;  2MP0 A;  1HQM D;  2MQA A;  3EZA A;  1K83 A;  3LR8 A;  4V2R A;  2BE5 D;  2LKM B;  3GTO A;  3LRD A;  2AQL A;  1T6P A;  2EZC A;  1EZB A;  2JA7 A;  1TWC A;  1R9T A;  1ZYM A;  2R92 A;  2YU9 A;  2VK9 A;  1IW7 D;  1Y1V A;  1EZA A;  2N1D B;  1Y2M A;  1TWF A;  1ZYR D;  2LPI A;  4C5S A;  1I50 A;  2R7Z A;  3LR2 A;  3U44 A;  1SMY D;  1T6J A;  1YNJ D;  2MX8 A; 
#chains in the Genus database with same CATH homology
 2JA6 A;  1TWA A;  4QIW A;  3GTK A;  2A69 D;  3GTP A;  3U4Q A;  2E2I A;  2B63 A;  2FIO A;  1WCM A;  3CQZ A;  2K3N A;  2X0Q A;  3GTM A;  1Y1W A;  3GTJ A;  3GTL A;  2O5J D;  1TWH A;  1I3Q A;  2MX9 A;  2A6H D;  3LR6 A;  2A6E D;  2NVX A;  4C2M A;  2LPJ A;  2Y0N A;  1TWG A;  2X0P A;  2VUM A;  2X0O A;  4CEJ A;  3GTQ A;  2LTH A;  3FKI A;  2JA5 A;  2E2H A;  2LYI A;  2FIP A;  4FBS A;  1YNN D;  4CEH A;  2NVY A;  2N3E A;  2K3O A;  3GTG A;  3H0G A;  2CW0 D;  2A68 D;  1SFO A;  1I6V D;  5IZ2 A;  2K3Q A;  4CEI A;  2F5J A;  2R93 A;  1HQM D;  2MQA A;  1K83 A;  3LR8 A;  2BE5 D;  3GTO A;  2LKM B;  3LRD A;  2AQL A;  2JA7 A;  1TWC A;  1R9T A;  2R92 A;  2YU9 A;  2VK9 A;  1Y1V A;  1IW7 D;  2N1D B;  1TWF A;  1ZYR D;  2LPI A;  1I50 A;  2R7Z A;  3LR2 A;  3U44 A;  1SMY D;  1YNJ D;  2MX8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LR8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations