3WRPA

Flexibility of the dna-binding domains of trp repressor
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
101
Chain Sequence
SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLLKSD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Flexibility of the DNA-binding domains of trp repressor.
pubmed doi rcsb
molecule tags Dna binding regulatory protein
source organism Escherichia coli
molecule keywords TRP REPRESSOR
total genus 36
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 1987-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01371 Trp_repressor Trp repressor protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1270.10 Mainly Alpha Orthogonal Bundle Trp Operon Repressor; Chain A TrpR-like 3wrpA00
1JHGA 3FRWA 2XDIA 3KORA 1WRSR 3SSWN 3WRPA 1TROA 2OZ9R 1TRRA 1ZT9A 1WRPR 1WRTR 3SSXN 1CO0A 1MI7R 1RCSA 3G1CA
chains in the Genus database with same CATH superfamily
4YQ8A 4YQAA 4YQPA 3KORA 4YVJA 3QUVA 4YQCA 4YQQA 3KNUA 1WRPR 3SSXN 4MCCA 4YQ0A 3G1CA 4MCBA 4YQBA 4YQ9A 4YVKA 3FRWA 2XDIA 1OY5A 4YQ6A 1TRRA 1ZT9A 1WRTR 1UAMA 3KY7A 4YPZA 1UAJA 4YQSA 3WRPA 4YVHA 4YPXA 4YQGA 4H3YA 4MCDA 5D9FA 4YQTA 1WRSR 3IEFA 4YVGA 4YQDA 1P9PA 3SSWN 4YQKA 4YQJA 1MI7R 4IG6A 4YQOA 1CO0A 4YQ3A 4YQRA 4YQLA 4YQ2A 4YQNA 4YVIA 1RCSA 1JHGA 4YQ4A 1UALA 4YQ5A 4YPYA 1TROA 2OZ9R 4H3ZA 3AXZA 4YQ1A 4YQ7A 4YQIA 1UAKA 4YPWA
chains in the Genus database with same CATH topology
1JHGA 3FRWA 2XDIA 3KORA 1WRSR 3SSWN 3WRPA 1TROA 2OZ9R 1TRRA 1ZT9A 1WRPR 1WRTR 3SSXN 1CO0A 1MI7R 1RCSA 3G1CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JHG A;  3FRW A;  2XDI A;  3KOR A;  1WRS R;  3SSW N;  3WRP A;  1TRO A;  2OZ9 R;  1TRR A;  1ZT9 A;  1WRP R;  1WRT R;  3SSX N;  1CO0 A;  1MI7 R;  1RCS A;  3G1C A; 
#chains in the Genus database with same CATH topology
 4YQ8 A;  4YQA A;  4YQP A;  3KOR A;  4YVJ A;  3QUV A;  4YQC A;  4YQQ A;  3KNU A;  1WRP R;  3SSX N;  4MCC A;  4YQ0 A;  3G1C A;  4MCB A;  4YQB A;  4YQ9 A;  4YVK A;  3FRW A;  2XDI A;  1OY5 A;  4YQ6 A;  1TRR A;  1ZT9 A;  1WRT R;  1UAM A;  3KY7 A;  4YPZ A;  1UAJ A;  4YQS A;  3WRP A;  4YVH A;  4YPX A;  4YQG A;  4H3Y A;  4MCD A;  5D9F A;  4YQT A;  1WRS R;  3IEF A;  4YVG A;  4YQD A;  1P9P A;  3SSW N;  4YQK A;  4YQJ A;  1MI7 R;  4IG6 A;  4YQO A;  1CO0 A;  4YQ3 A;  4YQR A;  4YQL A;  4YQ2 A;  4YQN A;  4YVI A;  1RCS A;  1JHG A;  4YQ4 A;  1UAL A;  4YQ5 A;  4YPY A;  1TRO A;  2OZ9 R;  4H3Z A;  3AXZ A;  4YQ1 A;  4YQ7 A;  4YQI A;  1UAK A;  4YPW A; 
#chains in the Genus database with same CATH homology
 1JHG A;  3FRW A;  2XDI A;  3KOR A;  1WRS R;  3SSW N;  3WRP A;  1TRO A;  2OZ9 R;  1TRR A;  1ZT9 A;  1WRP R;  1WRT R;  3SSX N;  1CO0 A;  1MI7 R;  1RCS A;  3G1C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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