4FBS | Genus

Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	124
structure length	120
Chain Sequence	TTPWTNPGLAENFMNSFMQGLSSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRTSPNKLQALNMRFASSMAEIAASGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 120 atoms

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120 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Euprosthenops australis
publication title	pH-Dependent Dimerization of Spider Silk N-Terminal Domain Requires Relocation of a Wedged Tryptophan Side Chain pubmed doi rcsb
molecule keywords	Major ampullate spidroin 1
total genus	53
structure length	120
sequence length	124
ec nomenclature
pdb deposition date	2012-05-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16763	Spidroin_N	Major ampullate spidroin 1, spider silk protein 1, N-term

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.274.70	Mainly Alpha	Orthogonal Bundle	Enzyme I; Chain A, domain 2	Enzyme I; Chain A, domain 2	4fbsA01

2LPIA 2MX9A 3LR6A 3LR8A 2LPJA 2LTHA 2MX8A 2N3EA 3LRDA 4FBSA 3LR2A 5IZ2A 2K3QA
chains in the Genus database with same CATH superfamily

1W27A 3LR6A 2LTHA 2NVYA 4CEJA 2K3NA 2JA5A 2A69D 3U4QA 3U44A 2X0QA 2BE5D 2JA7A 1YNND 1T6PA 1Y2MA 1ZYRD 5IZ2A 2HWGA 1HQMD 2LPIA 2N1DB 3EZEA 3EZBA 2K3OA 3GTOA 1WCMA 1ZYMA 1T6JA 4CQ5A 4BABA 2MQAA 1R9TA 1TWHA 1I50A 1I6VD 2MX9A 2R92A 2MP0A 2FIPA 4FBSA 1TWFA 1TWGA 2CW0D 2E2IA 2O5JD 1YNJD 3GTQA 4C2MA 2VUMA 2HROA 1IW7D 2A6HD 1Y1WA 2Y0NA 3LR2A 1I3QA 4V2QA 2EZCA 2YIIA 1EZBA 4C5UA 3LR8A 4V2RA 2EZAA 2MX8A 2A68D 3FKIA 3NZ4A 3CQZA 2X0OA 2FIOA 2LKMB 3GTJA 1TWAA 2X0PA 3GTKA 2B63A 3GTPA 2EZBA 4BAAA 3GTMA 2R93A 3GTGA 4QIWA 2A6ED 2E2HA 2K3QA 4C6GA 1SFOA 1K83A 2AQLA 2R7ZA 4C5SA 1TWCA 4CEHA 4CEIA 1EZAA 1SMYD 3H0GA 2LPJA 2N3EA 2LYIA 3EZAA 2VK9A 2NVXA 3GTLA 2JA6A 1Y1VA 3LRDA 4C5RA 2F5JA 2YU9A
chains in the Genus database with same CATH topology

3LR6A 2LTHA 2NVYA 4CEJA 2K3NA 2JA5A 2A69D 3U4QA 3U44A 2X0QA 2BE5D 2JA7A 1YNND 1ZYRD 5IZ2A 1HQMD 2LPIA 2N1DB 2K3OA 3GTOA 1WCMA 2MQAA 1R9TA 1TWHA 1I50A 1I6VD 2MX9A 2R92A 2FIPA 4FBSA 1TWFA 1TWGA 2CW0D 2E2IA 2O5JD 1YNJD 3GTQA 4C2MA 2VUMA 1IW7D 2A6HD 1Y1WA 2Y0NA 3LR2A 1I3QA 3LR8A 2MX8A 2A68D 3FKIA 3CQZA 2X0OA 2FIOA 2LKMB 3GTJA 1TWAA 2X0PA 3GTKA 2B63A 3GTPA 3GTMA 2R93A 3GTGA 4QIWA 2A6ED 2E2HA 2K3QA 1SFOA 1K83A 2AQLA 2R7ZA 1TWCA 4CEHA 4CEIA 1SMYD 3H0GA 2LPJA 2N3EA 2LYIA 2VK9A 2NVXA 3GTLA 2JA6A 1Y1VA 3LRDA 2F5JA 2YU9A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LPI A;  2MX9 A;  3LR6 A;  3LR8 A;  2LPJ A;  2LTH A;  2MX8 A;  2N3E A;  3LRD A;  4FBS A;  3LR2 A;  5IZ2 A;  2K3Q A; 
#chains in the Genus database with same CATH topology
 1W27 A;  3LR6 A;  2LTH A;  2NVY A;  4CEJ A;  2K3N A;  2JA5 A;  2A69 D;  3U4Q A;  3U44 A;  2X0Q A;  2BE5 D;  2JA7 A;  1YNN D;  1T6P A;  1Y2M A;  1ZYR D;  5IZ2 A;  2HWG A;  1HQM D;  2LPI A;  2N1D B;  3EZE A;  3EZB A;  2K3O A;  3GTO A;  1WCM A;  1ZYM A;  1T6J A;  4CQ5 A;  4BAB A;  2MQA A;  1R9T A;  1TWH A;  1I50 A;  1I6V D;  2MX9 A;  2R92 A;  2MP0 A;  2FIP A;  4FBS A;  1TWF A;  1TWG A;  2CW0 D;  2E2I A;  2O5J D;  1YNJ D;  3GTQ A;  4C2M A;  2VUM A;  2HRO A;  1IW7 D;  2A6H D;  1Y1W A;  2Y0N A;  3LR2 A;  1I3Q A;  4V2Q A;  2EZC A;  2YII A;  1EZB A;  4C5U A;  3LR8 A;  4V2R A;  2EZA A;  2MX8 A;  2A68 D;  3FKI A;  3NZ4 A;  3CQZ A;  2X0O A;  2FIO A;  2LKM B;  3GTJ A;  1TWA A;  2X0P A;  3GTK A;  2B63 A;  3GTP A;  2EZB A;  4BAA A;  3GTM A;  2R93 A;  3GTG A;  4QIW A;  2A6E D;  2E2H A;  2K3Q A;  4C6G A;  1SFO A;  1K83 A;  2AQL A;  2R7Z A;  4C5S A;  1TWC A;  4CEH A;  4CEI A;  1EZA A;  1SMY D;  3H0G A;  2LPJ A;  2N3E A;  2LYI A;  3EZA A;  2VK9 A;  2NVX A;  3GTL A;  2JA6 A;  1Y1V A;  3LRD A;  4C5R A;  2F5J A;  2YU9 A; 
#chains in the Genus database with same CATH homology
 3LR6 A;  2LTH A;  2NVY A;  4CEJ A;  2K3N A;  2JA5 A;  2A69 D;  3U4Q A;  3U44 A;  2X0Q A;  2BE5 D;  2JA7 A;  1YNN D;  1ZYR D;  5IZ2 A;  1HQM D;  2LPI A;  2N1D B;  2K3O A;  3GTO A;  1WCM A;  2MQA A;  1R9T A;  1TWH A;  1I50 A;  1I6V D;  2MX9 A;  2R92 A;  2FIP A;  4FBS A;  1TWF A;  1TWG A;  2CW0 D;  2E2I A;  2O5J D;  1YNJ D;  3GTQ A;  4C2M A;  2VUM A;  1IW7 D;  2A6H D;  1Y1W A;  2Y0N A;  3LR2 A;  1I3Q A;  3LR8 A;  2MX8 A;  2A68 D;  3FKI A;  3CQZ A;  2X0O A;  2FIO A;  2LKM B;  3GTJ A;  1TWA A;  2X0P A;  3GTK A;  2B63 A;  3GTP A;  3GTM A;  2R93 A;  3GTG A;  4QIW A;  2A6E D;  2E2H A;  2K3Q A;  1SFO A;  1K83 A;  2AQL A;  2R7Z A;  1TWC A;  4CEH A;  4CEI A;  1SMY D;  3H0G A;  2LPJ A;  2N3E A;  2LYI A;  2VK9 A;  2NVX A;  3GTL A;  2JA6 A;  1Y1V A;  3LRD A;  2F5J A;  2YU9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4FBSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations