5FLXR

Mammalian 40s hcv-ires complex
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
121
structure length
121
Chain Sequence
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
pubmed doi rcsb
source organism Hepatitis c virus
molecule tags Ribosome
molecule keywords 18S RRNA
total genus 21
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2015-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
R PF00833 Ribosomal_S17e Ribosomal S17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.20 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Ribosomal protein S17e-like 5flxR01
3JAMR 3J81R 3J7AW 5FLXR 5IT9R 1RQ6A 5A2QR 3J80R
chains in the Genus database with same CATH superfamily
3JAMR 2EV6A 2EV0A 1DPRA 4HX8A 2P0TA 5IT9R 1P92A 1ON2A 1RQ6A 1G3SA 2QQBA 1C0WA 2F5DA 5A2QR 2X98A 2HYGD 1BI3A 1FX7A 2TDXA 1U8RA 1G3YA 2HYFA 1BI1A 2QQ9A 1G3TA 3A52A 4HV6A 2M35A 2F5FA 1ON1A 2QQAA 4O5VA 1B1BA 3J81R 3GLXA 2ISZA 2EV5A 2MUNA 1F5TA 2MZ4A 1DDNA 1BI0A 1G3WA 3R61A 4HX7A 4HX4A 4O6JA 4HV5A 2H09A 2F5EA 3J80R 3R60A 2F5CA 3J7AW 1XCVA 2MVTA 1BI2A 2DTRA 5FLXR 1FWZA
chains in the Genus database with same CATH topology
3JAMR 3J81R 3J7AW 5FLXR 5IT9R 1RQ6A 5A2QR 3J80R
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAM R;  3J81 R;  3J7A W;  5FLX R;  5IT9 R;  1RQ6 A;  5A2Q R;  3J80 R; 
#chains in the Genus database with same CATH topology
 3JAM R;  2EV6 A;  2EV0 A;  1DPR A;  4HX8 A;  2P0T A;  5IT9 R;  1P92 A;  1ON2 A;  1RQ6 A;  1G3S A;  2QQB A;  1C0W A;  2F5D A;  5A2Q R;  2X98 A;  2HYG D;  1BI3 A;  1FX7 A;  2TDX A;  1U8R A;  1G3Y A;  2HYF A;  1BI1 A;  2QQ9 A;  1G3T A;  3A52 A;  4HV6 A;  2M35 A;  2F5F A;  1ON1 A;  2QQA A;  4O5V A;  1B1B A;  3J81 R;  3GLX A;  2ISZ A;  2EV5 A;  2MUN A;  1F5T A;  2MZ4 A;  1DDN A;  1BI0 A;  1G3W A;  3R61 A;  4HX7 A;  4HX4 A;  4O6J A;  4HV5 A;  2H09 A;  2F5E A;  3J80 R;  3R60 A;  2F5C A;  3J7A W;  1XCV A;  2MVT A;  1BI2 A;  2DTR A;  5FLX R;  1FWZ A; 
#chains in the Genus database with same CATH homology
 3JAM R;  3J81 R;  3J7A W;  5FLX R;  5IT9 R;  1RQ6 A;  5A2Q R;  3J80 R; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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