2X98A

H.salinarum alkaline phosphatase
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
Knots found
sequence length
430
structure length
430
Chain Sequence
ASPAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVSPAETPTGFDAFSSRGSMTTFPDDPYETTTDSAAAATAFASGVKTYNGAIGGVQTSGGGFQRVDTVLERASAQGYATGLITTTEATHATPAAFAAHVEDRGNQTEIARQYIEETQPDVILGGQRRDFEADASNGGTLVDAARDNGYTIAETAAELDAVDDPPVLGLFSQESHLDYYLDRKNDPENTQPNLDAMVDAGVDLLSSAGDPDKGFFLLVESGRVDHAGHANYPAQVAEQYEATQVAGQLVEYAETTAEPTFLVSTGDHECGGLTLGRDSPYEVEYDVLAAQKATTSRLRDLLAGVRSADELESIVAAHTGITALTDREVAKLRDAPGSISTILAERAGIAFTTDGHTGTDVPVFAHGPNAARFDAARDNTAVADALAAALGVSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Biochemical Characterization of a Halophilic Archaeal Alkaline Phosphatase.
pubmed doi rcsb
source organism Halobacterium salinarum
molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
total genus 149
structure length 430
sequence length 430
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.40 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 2x98A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2x98A01
1ELYA 1Y6VA 4CXUA 4LQYA 2QZUA 5AJ9A 4GTWA 4UPIA 4YR1A 1AJCA 4UPHA 5IJSA 2W5WA 1K7HA 4LR2A 5EGEA 5KXAA 3T01A 4CYSA 3NKPA 3UO0A 4KJGA 2XRGA 2IUCA 3UN3A 4UPLA 5LQQA 1ELXA 5GOVA 3NVLA 1EJJA 1Y7AA 4TN0A 3T02A 2ZKTA 5IJQA 1ANIA 1URBA 2W5TA 2GSNA 5C66A 3B5QA 4MIVA 3NKOA 5DLVA 4CXSA 2W8DA 3MK1A 4LR9A 1EW8A 4ZG9A 1ZEFA 3OT9A 2D1GA 1HQAA 4KM4A 4LRCA 2RH6A 4CXKA 5L0BA 3E2DA 3SZYA 1E2SP 3BDGB 4LRBA 4FDIA 4GTXA 4ZGAA 4UOPA 2GSOA 4UPKA 1KH9A 1KH5A 2GLQA 5LRMA 1ZEDA 1EQJA 1EI6A 1ED9A 3TWZA 1KHKA 1KHJA 3IGYB 3ED4A 4KAVA 3UNYA 4LRFA 1AUKA 4LR7A 5LRNA 4CYRA 5HRTA 4FDJA 3NKRA 3M8YA 4ZG6A 1AJBA 2W5XA 3M8ZA 1SHNA 2W5RA 4N7TA 1E33P 3IDDA 1KH4A 3BDGA 5DLWA 5DLTA 1EW9A 3SZZA 3UN5A 4ZG7A 1EW2A 5EGHA 3WAWA 1B8JA 4MY4A 4NWXA 3WBHA 3T00A 3NKNA 1URAA 5L0EA 4GTYA 4UORA 2IUCB 4GTZA 5INHA 1HJKA 4QAXA 3WAYA 4LREA 3WAVA 3Q3QA 2X98A 4KAYA 5LIAA 5GRRA 2W8SA 2IFYA 2W5SA 1KH7A 5L0KA 1ANJA 1ALIA 2VQRA 1E3CP 4LRDA 3DPCA 4B56A 4NWJA 4LRAA 5TJ3A 4MHXA 2GSUA 1ALKA 3UN2A 1KHLA 1ED8A 1FSUA 3BDFA 2W5VA 3DYCA 3KD8A 1SHQA 1O99A 1KHNA 3NKQA 1AJAA 1O98A 3TX0A 4UOOA 1P49A 1ALHA 1N2KA 1ALJA 3LXQA 3NKMA 1ELZA 3IGZB 3WAXA 2ANHA 1HDHA 2W5QA 3MK2A 4LR8A 3M7VA 3CMRA 1ZEBA 1AJDA 3M8WA 3TG0A 2G9YA 3MK0A 5K4PA 2XR9A 3A52A 2GA3A 1E1ZP 4KJDA 1N2LA 3BDHA
chains in the Genus database with same CATH superfamily
1ELYA 1Y6VA 1RQ6A 4CXUA 4LQYA 2QZUA 5AJ9A 4GTWA 4UPIA 4YR1A 1FWZA 1AJCA 2QQAA 4UPHA 5IJSA 2W5WA 1K7HA 4LR2A 5EGEA 5KXAA 3T01A 5IT9R 4CYSA 4HV5A 3NKPA 3UO0A 4KJGA 2XRGA 2IUCA 3UN3A 4UPLA 3J7AW 1ELXA 2MVTA 5GOVA 5LQQA 3NVLA 2H09A 1EJJA 2HYFA 1Y7AA 4TN0A 3T02A 2ZKTA 5IJQA 1ANIA 1URBA 1ON1A 2W5TA 4O6JA 4HX7A 2GSNA 2MUNA 3B5QA 2DTRA 4MIVA 3NKOA 5C66A 5DLVA 4CXSA 2W8DA 3MK1A 1G3YA 4LR9A 1EW8A 4ZG9A 1F5TA 1ZEFA 3OT9A 2D1GA 1HQAA 4KM4A 4LRCA 3J81R 2RH6A 4CXKA 5L0BA 3E2DA 3SZYA 1E2SP 1P92A 3BDGB 4LRBA 2EV0A 4FDIA 4GTXA 4ZGAA 4UOPA 2GSOA 4UPKA 1KH9A 1KH5A 1BI1A 1ON2A 2GLQA 5LRMA 1ZEDA 1EQJA 1EI6A 1ED9A 3J80R 3TWZA 1KHKA 1KHJA 3IGYB 3ED4A 4KAVA 4HX8A 3UNYA 4LRFA 2TDXA 2EV6A 1AUKA 4LR7A 5LRNA 1XCVA 4CYRA 5HRTA 4FDJA 3NKRA 2F5EA 3M8YA 4ZG6A 1AJBA 2W5XA 1BI3A 3M8ZA 1SHNA 5FLXR 2W5RA 2EV5A 1E33P 4N7TA 3IDDA 1BI0A 2F5CA 1KH4A 3BDGA 5DLWA 5DLTA 1EW9A 3SZZA 3UN5A 4ZG7A 2F5DA 1EW2A 5EGHA 3WAWA 1B8JA 1G3WA 4MY4A 4NWXA 3WBHA 3T00A 3NKNA 2MZ4A 1URAA 5L0EA 4GTYA 2HYGD 2IUCB 4UORA 4GTZA 5INHA 1HJKA 4QAXA 3WAYA 4LREA 3WAVA 3R60A 1U8RA 3GLXA 3Q3QA 3JAMR 1G3TA 2F5FA 2X98A 4KAYA 5LIAA 5GRRA 2W8SA 2IFYA 2W5SA 1KH7A 1FX7A 5L0KA 1ANJA 4O5VA 1ALIA 2VQRA 1DPRA 1E3CP 1B1BA 4LRDA 1DDNA 3DPCA 4B56A 4NWJA 4LRAA 5TJ3A 4MHXA 2GSUA 1ALKA 3UN2A 1C0WA 1KHLA 1ED8A 1FSUA 3BDFA 2W5VA 3DYCA 3KD8A 1SHQA 1O99A 1KHNA 3NKQA 2M35A 1AJAA 1O98A 4HX4A 3TX0A 4UOOA 1P49A 1ALHA 1N2KA 1ALJA 3LXQA 3NKMA 1ELZA 3IGZB 3WAXA 2ANHA 1HDHA 2W5QA 3MK2A 4LR8A 3M7VA 2P0TA 1BI2A 2ISZA 1ZEBA 3CMRA 2QQ9A 1G3SA 1AJDA 3M8WA 3TG0A 2G9YA 3MK0A 5K4PA 2XR9A 3A52A 2GA3A 5A2QR 3R61A 4HV6A 1E1ZP 3BDHA 4KJDA 1N2LA 2QQBA
chains in the Genus database with same CATH topology
1ELYA 1Y6VA 4CXUA 4LQYA 2QZUA 5AJ9A 4GTWA 4UPIA 4YR1A 1AJCA 4UPHA 5IJSA 2W5WA 1K7HA 4LR2A 5EGEA 5KXAA 3T01A 4CYSA 3NKPA 3UO0A 4KJGA 2XRGA 2IUCA 3UN3A 4UPLA 5LQQA 1ELXA 2MVTA 5GOVA 3NVLA 1EJJA 1Y7AA 4TN0A 3T02A 2ZKTA 5IJQA 1ANIA 1URBA 2W5TA 2GSNA 2MUNA 3B5QA 5C66A 4MIVA 3NKOA 5DLVA 4CXSA 2W8DA 3MK1A 4LR9A 1EW8A 4ZG9A 1ZEFA 3OT9A 2D1GA 1HQAA 4KM4A 4LRCA 2RH6A 4CXKA 5L0BA 3E2DA 3SZYA 1E2SP 3BDGB 4LRBA 4FDIA 4GTXA 4ZGAA 4UOPA 2GSOA 4UPKA 1KH9A 1KH5A 2GLQA 5LRMA 1ZEDA 1EQJA 1EI6A 1ED9A 3TWZA 1KHKA 1KHJA 3IGYB 3ED4A 4KAVA 3UNYA 4LRFA 1AUKA 4LR7A 5LRNA 4CYRA 5HRTA 4FDJA 3NKRA 3M8YA 4ZG6A 1AJBA 2W5XA 3M8ZA 1SHNA 2W5RA 4N7TA 1E33P 3IDDA 1KH4A 3BDGA 5DLWA 5DLTA 1EW9A 3SZZA 3UN5A 4ZG7A 1EW2A 5EGHA 3WAWA 1B8JA 4MY4A 4NWXA 3WBHA 3T00A 3NKNA 2MZ4A 1URAA 5L0EA 4GTYA 4UORA 2IUCB 4GTZA 5INHA 1HJKA 4QAXA 3WAYA 4LREA 3WAVA 3Q3QA 2X98A 4KAYA 5LIAA 5GRRA 2W8SA 2IFYA 2W5SA 1KH7A 5L0KA 1ANJA 1ALIA 2VQRA 1E3CP 4LRDA 3DPCA 4B56A 4NWJA 4LRAA 5TJ3A 4MHXA 2GSUA 1ALKA 3UN2A 1KHLA 1ED8A 1FSUA 3BDFA 2W5VA 3DYCA 3KD8A 1SHQA 1O99A 1KHNA 3NKQA 2M35A 1AJAA 1O98A 3TX0A 4UOOA 1P49A 1ALHA 1N2KA 1ALJA 3LXQA 3NKMA 1ELZA 3IGZB 3WAXA 2ANHA 1HDHA 2W5QA 3MK2A 4LR8A 3M7VA 3CMRA 1ZEBA 1AJDA 3M8WA 3TG0A 2G9YA 3MK0A 5K4PA 2XR9A 3A52A 2GA3A 1E1ZP 4KJDA 1N2LA 3BDHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ELY A;  1Y6V A;  4CXU A;  4LQY A;  2QZU A;  5AJ9 A;  4GTW A;  4UPI A;  4YR1 A;  1AJC A;  4UPH A;  5IJS A;  2W5W A;  1K7H A;  4LR2 A;  5EGE A;  5KXA A;  3T01 A;  4CYS A;  3NKP A;  3UO0 A;  4KJG A;  2XRG A;  2IUC A;  3UN3 A;  4UPL A;  5LQQ A;  1ELX A;  5GOV A;  3NVL A;  1EJJ A;  1Y7A A;  4TN0 A;  3T02 A;  2ZKT A;  5IJQ A;  1ANI A;  1URB A;  2W5T A;  2GSN A;  5C66 A;  3B5Q A;  4MIV A;  3NKO A;  5DLV A;  4CXS A;  2W8D A;  3MK1 A;  4LR9 A;  1EW8 A;  4ZG9 A;  1ZEF A;  3OT9 A;  2D1G A;  1HQA A;  4KM4 A;  4LRC A;  2RH6 A;  4CXK A;  5L0B A;  3E2D A;  3SZY A;  1E2S P;  3BDG B;  4LRB A;  4FDI A;  4GTX A;  4ZGA A;  4UOP A;  2GSO A;  4UPK A;  1KH9 A;  1KH5 A;  2GLQ A;  5LRM A;  1ZED A;  1EQJ A;  1EI6 A;  1ED9 A;  3TWZ A;  1KHK A;  1KHJ A;  3IGY B;  3ED4 A;  4KAV A;  3UNY A;  4LRF A;  1AUK A;  4LR7 A;  5LRN A;  4CYR A;  5HRT A;  4FDJ A;  3NKR A;  3M8Y A;  4ZG6 A;  1AJB A;  2W5X A;  3M8Z A;  1SHN A;  2W5R A;  4N7T A;  1E33 P;  3IDD A;  1KH4 A;  3BDG A;  5DLW A;  5DLT A;  1EW9 A;  3SZZ A;  3UN5 A;  4ZG7 A;  1EW2 A;  5EGH A;  3WAW A;  1B8J A;  4MY4 A;  4NWX A;  3WBH A;  3T00 A;  3NKN A;  1URA A;  5L0E A;  4GTY A;  4UOR A;  2IUC B;  4GTZ A;  5INH A;  1HJK A;  4QAX A;  3WAY A;  4LRE A;  3WAV A;  3Q3Q A;  2X98 A;  4KAY A;  5LIA A;  5GRR A;  2W8S A;  2IFY A;  2W5S A;  1KH7 A;  5L0K A;  1ANJ A;  1ALI A;  2VQR A;  1E3C P;  4LRD A;  3DPC A;  4B56 A;  4NWJ A;  4LRA A;  5TJ3 A;  4MHX A;  2GSU A;  1ALK A;  3UN2 A;  1KHL A;  1ED8 A;  1FSU A;  3BDF A;  2W5V A;  3DYC A;  3KD8 A;  1SHQ A;  1O99 A;  1KHN A;  3NKQ A;  1AJA A;  1O98 A;  3TX0 A;  4UOO A;  1P49 A;  1ALH A;  1N2K A;  1ALJ A;  3LXQ A;  3NKM A;  1ELZ A;  3IGZ B;  3WAX A;  2ANH A;  1HDH A;  2W5Q A;  3MK2 A;  4LR8 A;  3M7V A;  3CMR A;  1ZEB A;  1AJD A;  3M8W A;  3TG0 A;  2G9Y A;  3MK0 A;  5K4P A;  2XR9 A;  3A52 A;  2GA3 A;  1E1Z P;  4KJD A;  1N2L A;  3BDH A; 
#chains in the Genus database with same CATH topology
 1ELY A;  1Y6V A;  1RQ6 A;  4CXU A;  4LQY A;  2QZU A;  5AJ9 A;  4GTW A;  4UPI A;  4YR1 A;  1FWZ A;  1AJC A;  2QQA A;  4UPH A;  5IJS A;  2W5W A;  1K7H A;  4LR2 A;  5EGE A;  5KXA A;  3T01 A;  5IT9 R;  4CYS A;  4HV5 A;  3NKP A;  3UO0 A;  4KJG A;  2XRG A;  2IUC A;  3UN3 A;  4UPL A;  3J7A W;  1ELX A;  2MVT A;  5GOV A;  5LQQ A;  3NVL A;  2H09 A;  1EJJ A;  2HYF A;  1Y7A A;  4TN0 A;  3T02 A;  2ZKT A;  5IJQ A;  1ANI A;  1URB A;  1ON1 A;  2W5T A;  4O6J A;  4HX7 A;  2GSN A;  2MUN A;  3B5Q A;  2DTR A;  4MIV A;  3NKO A;  5C66 A;  5DLV A;  4CXS A;  2W8D A;  3MK1 A;  1G3Y A;  4LR9 A;  1EW8 A;  4ZG9 A;  1F5T A;  1ZEF A;  3OT9 A;  2D1G A;  1HQA A;  4KM4 A;  4LRC A;  3J81 R;  2RH6 A;  4CXK A;  5L0B A;  3E2D A;  3SZY A;  1E2S P;  1P92 A;  3BDG B;  4LRB A;  2EV0 A;  4FDI A;  4GTX A;  4ZGA A;  4UOP A;  2GSO A;  4UPK A;  1KH9 A;  1KH5 A;  1BI1 A;  1ON2 A;  2GLQ A;  5LRM A;  1ZED A;  1EQJ A;  1EI6 A;  1ED9 A;  3J80 R;  3TWZ A;  1KHK A;  1KHJ A;  3IGY B;  3ED4 A;  4KAV A;  4HX8 A;  3UNY A;  4LRF A;  2TDX A;  2EV6 A;  1AUK A;  4LR7 A;  5LRN A;  1XCV A;  4CYR A;  5HRT A;  4FDJ A;  3NKR A;  2F5E A;  3M8Y A;  4ZG6 A;  1AJB A;  2W5X A;  1BI3 A;  3M8Z A;  1SHN A;  5FLX R;  2W5R A;  2EV5 A;  1E33 P;  4N7T A;  3IDD A;  1BI0 A;  2F5C A;  1KH4 A;  3BDG A;  5DLW A;  5DLT A;  1EW9 A;  3SZZ A;  3UN5 A;  4ZG7 A;  2F5D A;  1EW2 A;  5EGH A;  3WAW A;  1B8J A;  1G3W A;  4MY4 A;  4NWX A;  3WBH A;  3T00 A;  3NKN A;  2MZ4 A;  1URA A;  5L0E A;  4GTY A;  2HYG D;  2IUC B;  4UOR A;  4GTZ A;  5INH A;  1HJK A;  4QAX A;  3WAY A;  4LRE A;  3WAV A;  3R60 A;  1U8R A;  3GLX A;  3Q3Q A;  3JAM R;  1G3T A;  2F5F A;  2X98 A;  4KAY A;  5LIA A;  5GRR A;  2W8S A;  2IFY A;  2W5S A;  1KH7 A;  1FX7 A;  5L0K A;  1ANJ A;  4O5V A;  1ALI A;  2VQR A;  1DPR A;  1E3C P;  1B1B A;  4LRD A;  1DDN A;  3DPC A;  4B56 A;  4NWJ A;  4LRA A;  5TJ3 A;  4MHX A;  2GSU A;  1ALK A;  3UN2 A;  1C0W A;  1KHL A;  1ED8 A;  1FSU A;  3BDF A;  2W5V A;  3DYC A;  3KD8 A;  1SHQ A;  1O99 A;  1KHN A;  3NKQ A;  2M35 A;  1AJA A;  1O98 A;  4HX4 A;  3TX0 A;  4UOO A;  1P49 A;  1ALH A;  1N2K A;  1ALJ A;  3LXQ A;  3NKM A;  1ELZ A;  3IGZ B;  3WAX A;  2ANH A;  1HDH A;  2W5Q A;  3MK2 A;  4LR8 A;  3M7V A;  2P0T A;  1BI2 A;  2ISZ A;  1ZEB A;  3CMR A;  2QQ9 A;  1G3S A;  1AJD A;  3M8W A;  3TG0 A;  2G9Y A;  3MK0 A;  5K4P A;  2XR9 A;  3A52 A;  2GA3 A;  5A2Q R;  3R61 A;  4HV6 A;  1E1Z P;  3BDH A;  4KJD A;  1N2L A;  2QQB A; 
#chains in the Genus database with same CATH homology
 1ELY A;  1Y6V A;  4CXU A;  4LQY A;  2QZU A;  5AJ9 A;  4GTW A;  4UPI A;  4YR1 A;  1AJC A;  4UPH A;  5IJS A;  2W5W A;  1K7H A;  4LR2 A;  5EGE A;  5KXA A;  3T01 A;  4CYS A;  3NKP A;  3UO0 A;  4KJG A;  2XRG A;  2IUC A;  3UN3 A;  4UPL A;  5LQQ A;  1ELX A;  2MVT A;  5GOV A;  3NVL A;  1EJJ A;  1Y7A A;  4TN0 A;  3T02 A;  2ZKT A;  5IJQ A;  1ANI A;  1URB A;  2W5T A;  2GSN A;  2MUN A;  3B5Q A;  5C66 A;  4MIV A;  3NKO A;  5DLV A;  4CXS A;  2W8D A;  3MK1 A;  4LR9 A;  1EW8 A;  4ZG9 A;  1ZEF A;  3OT9 A;  2D1G A;  1HQA A;  4KM4 A;  4LRC A;  2RH6 A;  4CXK A;  5L0B A;  3E2D A;  3SZY A;  1E2S P;  3BDG B;  4LRB A;  4FDI A;  4GTX A;  4ZGA A;  4UOP A;  2GSO A;  4UPK A;  1KH9 A;  1KH5 A;  2GLQ A;  5LRM A;  1ZED A;  1EQJ A;  1EI6 A;  1ED9 A;  3TWZ A;  1KHK A;  1KHJ A;  3IGY B;  3ED4 A;  4KAV A;  3UNY A;  4LRF A;  1AUK A;  4LR7 A;  5LRN A;  4CYR A;  5HRT A;  4FDJ A;  3NKR A;  3M8Y A;  4ZG6 A;  1AJB A;  2W5X A;  3M8Z A;  1SHN A;  2W5R A;  4N7T A;  1E33 P;  3IDD A;  1KH4 A;  3BDG A;  5DLW A;  5DLT A;  1EW9 A;  3SZZ A;  3UN5 A;  4ZG7 A;  1EW2 A;  5EGH A;  3WAW A;  1B8J A;  4MY4 A;  4NWX A;  3WBH A;  3T00 A;  3NKN A;  2MZ4 A;  1URA A;  5L0E A;  4GTY A;  4UOR A;  2IUC B;  4GTZ A;  5INH A;  1HJK A;  4QAX A;  3WAY A;  4LRE A;  3WAV A;  3Q3Q A;  2X98 A;  4KAY A;  5LIA A;  5GRR A;  2W8S A;  2IFY A;  2W5S A;  1KH7 A;  5L0K A;  1ANJ A;  1ALI A;  2VQR A;  1E3C P;  4LRD A;  3DPC A;  4B56 A;  4NWJ A;  4LRA A;  5TJ3 A;  4MHX A;  2GSU A;  1ALK A;  3UN2 A;  1KHL A;  1ED8 A;  1FSU A;  3BDF A;  2W5V A;  3DYC A;  3KD8 A;  1SHQ A;  1O99 A;  1KHN A;  3NKQ A;  2M35 A;  1AJA A;  1O98 A;  3TX0 A;  4UOO A;  1P49 A;  1ALH A;  1N2K A;  1ALJ A;  3LXQ A;  3NKM A;  1ELZ A;  3IGZ B;  3WAX A;  2ANH A;  1HDH A;  2W5Q A;  3MK2 A;  4LR8 A;  3M7V A;  3CMR A;  1ZEB A;  1AJD A;  3M8W A;  3TG0 A;  2G9Y A;  3MK0 A;  5K4P A;  2XR9 A;  3A52 A;  2GA3 A;  1E1Z P;  4KJD A;  1N2L A;  3BDH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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