2X98A

H.salinarum alkaline phosphatase
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
Knots found
sequence length
430
structure length
430
Chain Sequence
ASPAANAIAYIVDGMGQTQISAARYLNAYKTAPERFPLNVSPAETPTGFDAFSSRGSMTTFPDDPYETTTDSAAAATAFASGVKTYNGAIGGVQTSGGGFQRVDTVLERASAQGYATGLITTTEATHATPAAFAAHVEDRGNQTEIARQYIEETQPDVILGGQRRDFEADASNGGTLVDAARDNGYTIAETAAELDAVDDPPVLGLFSQESHLDYYLDRKNDPENTQPNLDAMVDAGVDLLSSAGDPDKGFFLLVESGRVDHAGHANYPAQVAEQYEATQVAGQLVEYAETTAEPTFLVSTGDHECGGLTLGRDSPYEVEYDVLAAQKATTSRLRDLLAGVRSADELESIVAAHTGITALTDREVAKLRDAPGSISTILAERAGIAFTTDGHTGTDVPVFAHGPNAARFDAARDNTAVADALAAALGVSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ALKALINE PHOSPHATASE
publication title Structural and Biochemical Characterization of a Halophilic Archaeal Alkaline Phosphatase.
pubmed doi rcsb
source organism Halobacterium salinarum
total genus 149
structure length 430
sequence length 430
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature ec 3.1.3.1: Alkaline phosphatase.
pdb deposition date 2010-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.40 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 2x98A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 2x98A01
1E3CP 3NKOA 1KH7A 3TX0A 2W5VA 4CXUA 2W5RA 4MIVA 3OT9A 2GLQA 1AJBA 3M8ZA 1E1ZP 4LR9A 1ALHA 1SHQA 4UPKA 3WAWA 5L0EA 5IJQA 2GSUA 1AJCA 1P49A 5GOVA 2W5WA 3NKQA 1EW2A 2IFYA 3T00A 1URBA 1EI6A 3E2DA 1EW8A 1KHLA 2G9YA 3MK0A 1AJDA 1KHNA 3WAXA 1ED8A 4LRFA 3M7VA 2XR9A 3SZZA 5DLTA 5LRNA 5K4PA 4UPIA 1ALIA 5AJ9A 2VQRA 4B56A 3SZYA 1EW9A 1ZEBA 1AJAA 1E33P 4KAVA 2ZKTA 1KH9A 1Y7AA 3MK1A 2W5SA 4LR7A 5DLWA 3M8YA 4LREA 4ZG7A 4UPLA 1EQJA 4MHXA 3NKMA 1ZEFA 4LRBA 1O99A 1ELZA 3BDGB 3NKRA 1ANJA 1HJKA 4UORA 1Y6VA 4GTZA 2IUCB 3ED4A 4KAYA 4MY4A 2RH6A 4GTYA 1HQAA 1FSUA 4LRDA 3WAVA 4UOOA 5IJSA 2XRGA 4TN0A 4UPHA 5TJ3A 4LQYA 1ED9A 4ZG9A 3UN3A 2W8DA 3KD8A 4N7TA 3NVLA 4UOPA 3NKPA 1ALJA 3M8WA 4LRAA 4QAXA 3BDFA 5EGHA 3TWZA 4LRCA 4KM4A 5INHA 3B5QA 3IGZB 4KJDA 1AUKA 1N2LA 2D1GA 4FDIA 2GSOA 3BDHA 3UNYA 5L0BA 5DLVA 3T02A 4NWXA 3BDGA 3CMRA 3WBHA 2W5TA 4KJGA 1URAA 5C66A 2GSNA 3MK2A 3Q3QA 2IUCA 4CXSA 2GA3A 3UN2A 3A52A 3WAYA 1O98A 5HRTA 1ELYA 3DPCA 4GTWA 1KHJA 2X98A 3TG0A 1K7HA 3T01A 1E2SP 1N2KA 3DYCA 3LXQA 1HDHA 4CYSA 1ZEDA 4FDJA 5L0KA 4LR8A 4CXKA 3IDDA 5GRRA 4ZGAA 5EGEA 1EJJA 2W5XA 4ZG6A 4NWJA 3UO0A 4YR1A 1ANIA 1KHKA 2W5QA 4CYRA 3IGYB 5LIAA 2QZUA 2ANHA 5KXAA 1B8JA 1ELXA 5LQQA 4GTXA 1KH4A 1SHNA 5LRMA 2W8SA 1ALKA 1KH5A 3NKNA 3UN5A 4LR2A
chains in the Genus database with same CATH superfamily
1E3CP 3NKOA 1KH7A 1G3YA 1BI1A 2W5VA 3TX0A 5IT9R 4CXUA 3J81R 2W5RA 1U8RA 4MIVA 3OT9A 2GLQA 1AJBA 2MVTA 3M8ZA 1E1ZP 4LR9A 1ALHA 1SHQA 5FLXR 4UPKA 3WAWA 5L0EA 5IJQA 2GSUA 1AJCA 1P49A 5GOVA 2W5WA 3NKQA 1FX7A 2H09A 1EW2A 2IFYA 3T00A 1URBA 1EI6A 3E2DA 1EW8A 2F5CA 1KHLA 1BI0A 2G9YA 3MK0A 3J80R 1AJDA 1G3WA 4O6JA 1ED8A 1KHNA 2F5EA 4LRFA 3WAXA 3M7VA 2XR9A 3SZZA 5DLTA 5LRNA 1G3SA 1F5TA 1ALIA 4UPIA 2VQRA 5AJ9A 5K4PA 4B56A 3SZYA 1EW9A 1ZEBA 1AJAA 1E33P 4KAVA 4LR2A 2EV5A 4HX8A 4O5VA 2ZKTA 2M35A 1KH9A 1Y7AA 3MK1A 2F5FA 2W5SA 4LR7A 5DLWA 1FWZA 3M8YA 4LREA 2QQ9A 1C0WA 4HV5A 1EQJA 4MHXA 3NKMA 1ZEFA 4LRBA 4UPLA 4ZG7A 1O99A 1ELZA 3BDGB 2HYFA 3NKRA 2DTRA 1ANJA 3UN5A 1HJKA 4UORA 1Y6VA 2TDXA 4GTZA 2IUCB 3ED4A 4KAYA 4MY4A 2ISZA 2RH6A 4GTYA 2QQBA 1BI3A 1HQAA 1FSUA 4LRDA 3WAVA 4UOOA 5IJSA 2XRGA 4TN0A 4UPHA 5TJ3A 4LQYA 1ED9A 4HX4A 4ZG9A 3R60A 3UN3A 2W8DA 3KD8A 4N7TA 3NVLA 4UOPA 3NKPA 1ALJA 3M8WA 2QQAA 4LRAA 4QAXA 3BDFA 1DPRA 5A2QR 5EGHA 2MUNA 3TWZA 4LRCA 4KM4A 5INHA 3B5QA 3IGZB 4KJDA 1AUKA 1N2LA 2D1GA 4FDIA 1DDNA 2GSOA 3BDHA 3UNYA 5L0BA 5DLVA 3T02A 4NWXA 3BDGA 2EV0A 3CMRA 2P0TA 3WBHA 2W5TA 4KJGA 1URAA 5C66A 2GSNA 3MK2A 3Q3QA 2IUCA 2HYGD 4CXSA 2GA3A 1G3TA 1BI2A 3A52A 3UN2A 2F5DA 3WAYA 1O98A 5HRTA 2MZ4A 1ELYA 3DPCA 4GTWA 1KHJA 2X98A 3TG0A 1K7HA 3T01A 1E2SP 1N2KA 3DYCA 3LXQA 1HDHA 4CYSA 1ZEDA 2EV6A 4FDJA 5L0KA 4LR8A 4CXKA 1XCVA 1P92A 3IDDA 5GRRA 4ZGAA 3JAMR 5EGEA 1EJJA 2W5XA 1RQ6A 3R61A 4ZG6A 4NWJA 3UO0A 4YR1A 1ANIA 1KHKA 1ON2A 2W5QA 4CYRA 3IGYB 5LIAA 4HV6A 2QZUA 2ANHA 3J7AW 1ON1A 5KXAA 1B8JA 1ELXA 5LQQA 4GTXA 4HX7A 1KH4A 1SHNA 5LRMA 2W8SA 1ALKA 1KH5A 3NKNA 3GLXA 1B1BA
chains in the Genus database with same CATH topology
1E3CP 3NKOA 1KH7A 3TX0A 2W5VA 4CXUA 2W5RA 4MIVA 3OT9A 2GLQA 1AJBA 2MVTA 3M8ZA 1E1ZP 4LR9A 1ALHA 1SHQA 4UPKA 3WAWA 5L0EA 5IJQA 2GSUA 1AJCA 1P49A 5GOVA 2W5WA 3NKQA 1EW2A 2IFYA 3T00A 1URBA 1EI6A 3E2DA 1EW8A 1KHLA 2G9YA 3MK0A 1AJDA 1KHNA 3WAXA 1ED8A 4LRFA 3M7VA 2XR9A 3SZZA 5DLTA 5LRNA 5K4PA 4UPIA 1ALIA 5AJ9A 2VQRA 4B56A 3SZYA 1EW9A 1ZEBA 1AJAA 1E33P 4KAVA 2ZKTA 2M35A 1KH9A 1Y7AA 3MK1A 2W5SA 4LR7A 5DLWA 3M8YA 4LREA 4ZG7A 4UPLA 1EQJA 4MHXA 3NKMA 1ZEFA 4LRBA 1O99A 1ELZA 3BDGB 3NKRA 1ANJA 1HJKA 4UORA 1Y6VA 4GTZA 2IUCB 3ED4A 4KAYA 4MY4A 2RH6A 4GTYA 1HQAA 1FSUA 4LRDA 3WAVA 4UOOA 5IJSA 2XRGA 4TN0A 4UPHA 5TJ3A 4LQYA 1ED9A 4ZG9A 3UN3A 2W8DA 3KD8A 4N7TA 3NVLA 4UOPA 3NKPA 1ALJA 3M8WA 4LRAA 4QAXA 3BDFA 5EGHA 2MUNA 3TWZA 4LRCA 4KM4A 5INHA 3B5QA 3IGZB 4KJDA 1AUKA 1N2LA 2D1GA 4FDIA 2GSOA 3BDHA 3UNYA 5L0BA 5DLVA 3T02A 4NWXA 3BDGA 3CMRA 3WBHA 2W5TA 4KJGA 1URAA 5C66A 2GSNA 3MK2A 3Q3QA 2IUCA 4CXSA 2GA3A 3UN2A 3A52A 3WAYA 1O98A 5HRTA 2MZ4A 1ELYA 3DPCA 4GTWA 1KHJA 2X98A 3TG0A 1K7HA 3T01A 1E2SP 1N2KA 3DYCA 3LXQA 1HDHA 4CYSA 1ZEDA 4FDJA 5L0KA 4LR8A 4CXKA 3IDDA 5GRRA 4ZGAA 5EGEA 1EJJA 2W5XA 4ZG6A 4NWJA 3UO0A 4YR1A 1ANIA 1KHKA 2W5QA 4CYRA 3IGYB 5LIAA 2QZUA 2ANHA 5KXAA 1B8JA 1ELXA 5LQQA 4GTXA 1KH4A 1SHNA 5LRMA 2W8SA 1ALKA 1KH5A 3NKNA 3UN5A 4LR2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E3C P;  3NKO A;  1KH7 A;  3TX0 A;  2W5V A;  4CXU A;  2W5R A;  4MIV A;  3OT9 A;  2GLQ A;  1AJB A;  3M8Z A;  1E1Z P;  4LR9 A;  1ALH A;  1SHQ A;  4UPK A;  3WAW A;  5L0E A;  5IJQ A;  2GSU A;  1AJC A;  1P49 A;  5GOV A;  2W5W A;  3NKQ A;  1EW2 A;  2IFY A;  3T00 A;  1URB A;  1EI6 A;  3E2D A;  1EW8 A;  1KHL A;  2G9Y A;  3MK0 A;  1AJD A;  1KHN A;  3WAX A;  1ED8 A;  4LRF A;  3M7V A;  2XR9 A;  3SZZ A;  5DLT A;  5LRN A;  5K4P A;  4UPI A;  1ALI A;  5AJ9 A;  2VQR A;  4B56 A;  3SZY A;  1EW9 A;  1ZEB A;  1AJA A;  1E33 P;  4KAV A;  2ZKT A;  1KH9 A;  1Y7A A;  3MK1 A;  2W5S A;  4LR7 A;  5DLW A;  3M8Y A;  4LRE A;  4ZG7 A;  4UPL A;  1EQJ A;  4MHX A;  3NKM A;  1ZEF A;  4LRB A;  1O99 A;  1ELZ A;  3BDG B;  3NKR A;  1ANJ A;  1HJK A;  4UOR A;  1Y6V A;  4GTZ A;  2IUC B;  3ED4 A;  4KAY A;  4MY4 A;  2RH6 A;  4GTY A;  1HQA A;  1FSU A;  4LRD A;  3WAV A;  4UOO A;  5IJS A;  2XRG A;  4TN0 A;  4UPH A;  5TJ3 A;  4LQY A;  1ED9 A;  4ZG9 A;  3UN3 A;  2W8D A;  3KD8 A;  4N7T A;  3NVL A;  4UOP A;  3NKP A;  1ALJ A;  3M8W A;  4LRA A;  4QAX A;  3BDF A;  5EGH A;  3TWZ A;  4LRC A;  4KM4 A;  5INH A;  3B5Q A;  3IGZ B;  4KJD A;  1AUK A;  1N2L A;  2D1G A;  4FDI A;  2GSO A;  3BDH A;  3UNY A;  5L0B A;  5DLV A;  3T02 A;  4NWX A;  3BDG A;  3CMR A;  3WBH A;  2W5T A;  4KJG A;  1URA A;  5C66 A;  2GSN A;  3MK2 A;  3Q3Q A;  2IUC A;  4CXS A;  2GA3 A;  3UN2 A;  3A52 A;  3WAY A;  1O98 A;  5HRT A;  1ELY A;  3DPC A;  4GTW A;  1KHJ A;  2X98 A;  3TG0 A;  1K7H A;  3T01 A;  1E2S P;  1N2K A;  3DYC A;  3LXQ A;  1HDH A;  4CYS A;  1ZED A;  4FDJ A;  5L0K A;  4LR8 A;  4CXK A;  3IDD A;  5GRR A;  4ZGA A;  5EGE A;  1EJJ A;  2W5X A;  4ZG6 A;  4NWJ A;  3UO0 A;  4YR1 A;  1ANI A;  1KHK A;  2W5Q A;  4CYR A;  3IGY B;  5LIA A;  2QZU A;  2ANH A;  5KXA A;  1B8J A;  1ELX A;  5LQQ A;  4GTX A;  1KH4 A;  1SHN A;  5LRM A;  2W8S A;  1ALK A;  1KH5 A;  3NKN A;  3UN5 A;  4LR2 A; 
#chains in the Genus database with same CATH topology
 1E3C P;  3NKO A;  1KH7 A;  1G3Y A;  1BI1 A;  2W5V A;  3TX0 A;  5IT9 R;  4CXU A;  3J81 R;  2W5R A;  1U8R A;  4MIV A;  3OT9 A;  2GLQ A;  1AJB A;  2MVT A;  3M8Z A;  1E1Z P;  4LR9 A;  1ALH A;  1SHQ A;  5FLX R;  4UPK A;  3WAW A;  5L0E A;  5IJQ A;  2GSU A;  1AJC A;  1P49 A;  5GOV A;  2W5W A;  3NKQ A;  1FX7 A;  2H09 A;  1EW2 A;  2IFY A;  3T00 A;  1URB A;  1EI6 A;  3E2D A;  1EW8 A;  2F5C A;  1KHL A;  1BI0 A;  2G9Y A;  3MK0 A;  3J80 R;  1AJD A;  1G3W A;  4O6J A;  1ED8 A;  1KHN A;  2F5E A;  4LRF A;  3WAX A;  3M7V A;  2XR9 A;  3SZZ A;  5DLT A;  5LRN A;  1G3S A;  1F5T A;  1ALI A;  4UPI A;  2VQR A;  5AJ9 A;  5K4P A;  4B56 A;  3SZY A;  1EW9 A;  1ZEB A;  1AJA A;  1E33 P;  4KAV A;  4LR2 A;  2EV5 A;  4HX8 A;  4O5V A;  2ZKT A;  2M35 A;  1KH9 A;  1Y7A A;  3MK1 A;  2F5F A;  2W5S A;  4LR7 A;  5DLW A;  1FWZ A;  3M8Y A;  4LRE A;  2QQ9 A;  1C0W A;  4HV5 A;  1EQJ A;  4MHX A;  3NKM A;  1ZEF A;  4LRB A;  4UPL A;  4ZG7 A;  1O99 A;  1ELZ A;  3BDG B;  2HYF A;  3NKR A;  2DTR A;  1ANJ A;  3UN5 A;  1HJK A;  4UOR A;  1Y6V A;  2TDX A;  4GTZ A;  2IUC B;  3ED4 A;  4KAY A;  4MY4 A;  2ISZ A;  2RH6 A;  4GTY A;  2QQB A;  1BI3 A;  1HQA A;  1FSU A;  4LRD A;  3WAV A;  4UOO A;  5IJS A;  2XRG A;  4TN0 A;  4UPH A;  5TJ3 A;  4LQY A;  1ED9 A;  4HX4 A;  4ZG9 A;  3R60 A;  3UN3 A;  2W8D A;  3KD8 A;  4N7T A;  3NVL A;  4UOP A;  3NKP A;  1ALJ A;  3M8W A;  2QQA A;  4LRA A;  4QAX A;  3BDF A;  1DPR A;  5A2Q R;  5EGH A;  2MUN A;  3TWZ A;  4LRC A;  4KM4 A;  5INH A;  3B5Q A;  3IGZ B;  4KJD A;  1AUK A;  1N2L A;  2D1G A;  4FDI A;  1DDN A;  2GSO A;  3BDH A;  3UNY A;  5L0B A;  5DLV A;  3T02 A;  4NWX A;  3BDG A;  2EV0 A;  3CMR A;  2P0T A;  3WBH A;  2W5T A;  4KJG A;  1URA A;  5C66 A;  2GSN A;  3MK2 A;  3Q3Q A;  2IUC A;  2HYG D;  4CXS A;  2GA3 A;  1G3T A;  1BI2 A;  3A52 A;  3UN2 A;  2F5D A;  3WAY A;  1O98 A;  5HRT A;  2MZ4 A;  1ELY A;  3DPC A;  4GTW A;  1KHJ A;  2X98 A;  3TG0 A;  1K7H A;  3T01 A;  1E2S P;  1N2K A;  3DYC A;  3LXQ A;  1HDH A;  4CYS A;  1ZED A;  2EV6 A;  4FDJ A;  5L0K A;  4LR8 A;  4CXK A;  1XCV A;  1P92 A;  3IDD A;  5GRR A;  4ZGA A;  3JAM R;  5EGE A;  1EJJ A;  2W5X A;  1RQ6 A;  3R61 A;  4ZG6 A;  4NWJ A;  3UO0 A;  4YR1 A;  1ANI A;  1KHK A;  1ON2 A;  2W5Q A;  4CYR A;  3IGY B;  5LIA A;  4HV6 A;  2QZU A;  2ANH A;  3J7A W;  1ON1 A;  5KXA A;  1B8J A;  1ELX A;  5LQQ A;  4GTX A;  4HX7 A;  1KH4 A;  1SHN A;  5LRM A;  2W8S A;  1ALK A;  1KH5 A;  3NKN A;  3GLX A;  1B1B A; 
#chains in the Genus database with same CATH homology
 1E3C P;  3NKO A;  1KH7 A;  3TX0 A;  2W5V A;  4CXU A;  2W5R A;  4MIV A;  3OT9 A;  2GLQ A;  1AJB A;  2MVT A;  3M8Z A;  1E1Z P;  4LR9 A;  1ALH A;  1SHQ A;  4UPK A;  3WAW A;  5L0E A;  5IJQ A;  2GSU A;  1AJC A;  1P49 A;  5GOV A;  2W5W A;  3NKQ A;  1EW2 A;  2IFY A;  3T00 A;  1URB A;  1EI6 A;  3E2D A;  1EW8 A;  1KHL A;  2G9Y A;  3MK0 A;  1AJD A;  1KHN A;  3WAX A;  1ED8 A;  4LRF A;  3M7V A;  2XR9 A;  3SZZ A;  5DLT A;  5LRN A;  5K4P A;  4UPI A;  1ALI A;  5AJ9 A;  2VQR A;  4B56 A;  3SZY A;  1EW9 A;  1ZEB A;  1AJA A;  1E33 P;  4KAV A;  2ZKT A;  2M35 A;  1KH9 A;  1Y7A A;  3MK1 A;  2W5S A;  4LR7 A;  5DLW A;  3M8Y A;  4LRE A;  4ZG7 A;  4UPL A;  1EQJ A;  4MHX A;  3NKM A;  1ZEF A;  4LRB A;  1O99 A;  1ELZ A;  3BDG B;  3NKR A;  1ANJ A;  1HJK A;  4UOR A;  1Y6V A;  4GTZ A;  2IUC B;  3ED4 A;  4KAY A;  4MY4 A;  2RH6 A;  4GTY A;  1HQA A;  1FSU A;  4LRD A;  3WAV A;  4UOO A;  5IJS A;  2XRG A;  4TN0 A;  4UPH A;  5TJ3 A;  4LQY A;  1ED9 A;  4ZG9 A;  3UN3 A;  2W8D A;  3KD8 A;  4N7T A;  3NVL A;  4UOP A;  3NKP A;  1ALJ A;  3M8W A;  4LRA A;  4QAX A;  3BDF A;  5EGH A;  2MUN A;  3TWZ A;  4LRC A;  4KM4 A;  5INH A;  3B5Q A;  3IGZ B;  4KJD A;  1AUK A;  1N2L A;  2D1G A;  4FDI A;  2GSO A;  3BDH A;  3UNY A;  5L0B A;  5DLV A;  3T02 A;  4NWX A;  3BDG A;  3CMR A;  3WBH A;  2W5T A;  4KJG A;  1URA A;  5C66 A;  2GSN A;  3MK2 A;  3Q3Q A;  2IUC A;  4CXS A;  2GA3 A;  3UN2 A;  3A52 A;  3WAY A;  1O98 A;  5HRT A;  2MZ4 A;  1ELY A;  3DPC A;  4GTW A;  1KHJ A;  2X98 A;  3TG0 A;  1K7H A;  3T01 A;  1E2S P;  1N2K A;  3DYC A;  3LXQ A;  1HDH A;  4CYS A;  1ZED A;  4FDJ A;  5L0K A;  4LR8 A;  4CXK A;  3IDD A;  5GRR A;  4ZGA A;  5EGE A;  1EJJ A;  2W5X A;  4ZG6 A;  4NWJ A;  3UO0 A;  4YR1 A;  1ANI A;  1KHK A;  2W5Q A;  4CYR A;  3IGY B;  5LIA A;  2QZU A;  2ANH A;  5KXA A;  1B8J A;  1ELX A;  5LQQ A;  4GTX A;  1KH4 A;  1SHN A;  5LRM A;  2W8S A;  1ALK A;  1KH5 A;  3NKN A;  3UN5 A;  4LR2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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