3A52A

Crystal structure of cold-active alkailne phosphatase from psychrophile shewanella sp.
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
Knots found
sequence length
400
structure length
400
Chain Sequence
MGMIIMVGDGMGPAYTSAYRYFQDNPDTEEIEQTVFDRLLVGMASTYPARESGYVTDSAASATALATGFKSYNGAIAVDINKRPLTTIMQMAKARGMSTGVAVTAQVNHATPAAFLTHNESRKNYEAIAADMLKSDADVILGGGRKYFSEALVSQFSAKGYQHITELAQLDSITQPKVLGLFAEVQLPWVIDDTDANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAMAEMQGFANAIEVVEQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISASPASIATHAIAADDWQAGVNQQLGFDVNSTELQQLTNARMQGKSTLEVALKKIIDTRSYTGWTTSGHTGVDVQVFAMGPAADLFKGNQDNTHIAEKMMSLLPKVN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Cold-active alkaline phosphatase
publication title Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp.
pubmed rcsb
source organism Shewanella
total genus 147
structure length 400
sequence length 400
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2009-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.40 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 3a52A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3a52A01
1KH7A 3UNYA 4LRCA 3M7VA 3UN3A 2IFYA 1ALHA 4MIVA 3T00A 4UORA 5IJSA 1ALJA 5LQQA 3KD8A 3TX0A 3T02A 5LRMA 1O98A 5GRRA 1ELZA 1Y6VA 5AJ9A 4LR2A 1E1ZP 1ANJA 2GA3A 2GSNA 5L0EA 5L0KA 2W5XA 4ZGAA 4CXSA 3MK1A 2XRGA 3WAWA 4ZG9A 3OT9A 4FDJA 4GTZA 1ELXA 1URAA 3BDGB 5GOVA 3SZYA 3NKPA 3DYCA 1ELYA 3M8WA 1E33P 4LREA 1ED8A 4UPLA 3Q3QA 5EGHA 1AJBA 5DLVA 4NWXA 1EJJA 3NKNA 3NKOA 2IUCB 4N7TA 4UPIA 4ZG6A 1KHJA 1ZEDA 3IGZB 4UPKA 4B56A 2W5RA 2IUCA 3A52A 3NKRA 1ANIA 4LR9A 1URBA 4LRBA 3TWZA 5DLWA 3M8YA 3T01A 1KHKA 1E2SP 1SHQA 3WAYA 2W8DA 3IDDA 1K7HA 1AJCA 3NVLA 4LRAA 4KAVA 3DPCA 3BDFA 2D1GA 3WAXA 4KJGA 5INHA 5IJQA 3MK2A 1AUKA 1O99A 5C66A 2W5WA 1HQAA 4QAXA 3UN5A 1ZEBA 4KAYA 4NWJA 4UPHA 2G9YA 4MY4A 2XR9A 2X98A 1SHNA 5K4PA 2ANHA 4MHXA 4LR8A 1EW2A 2W8SA 4CXUA 1AJDA 1KHNA 3NKMA 5DLTA 3SZZA 1P49A 5KXAA 4KM4A 2GSOA 1KH4A 4GTWA 1HDHA 4TN0A 1ALKA 5LIAA 3TG0A 2RH6A 3MK0A 3NKQA 1Y7AA 3B5QA 3BDHA 3UO0A 5L0BA 1E3CP 3M8ZA 1HJKA 2W5QA 5EGEA 5TJ3A 3UN2A 1B8JA 3IGYB 4CYSA 1ED9A 2GLQA 4LRDA 1EW8A 3WBHA 2QZUA 4LR7A 4KJDA 1EQJA 2W5VA 3CMRA 1ZEFA 1ALIA 2ZKTA 3LXQA 4ZG7A 1N2LA 5HRTA 4FDIA 4LQYA 1FSUA 1KHLA 2W5SA 3WAVA 3E2DA 2VQRA 1KH9A 4CXKA 4UOPA 4GTXA 4YR1A 3ED4A 4LRFA 4CYRA 5LRNA 1EW9A 3BDGA 1EI6A 4UOOA 1AJAA 2W5TA 2GSUA 1KH5A 1N2KA 4GTYA
chains in the Genus database with same CATH superfamily
1BI3A 1KH7A 3UNYA 4LRCA 1DPRA 3M7VA 1F5TA 3UN3A 2IFYA 1ALHA 4MIVA 1FX7A 3R60A 4UORA 3T00A 5IJSA 1ALJA 5LQQA 3KD8A 3TX0A 2TDXA 3T02A 2M35A 2HYFA 5LRMA 1ON2A 1O98A 5GRRA 1ELZA 1Y6VA 5AJ9A 1DDNA 1E1ZP 1ANJA 2GA3A 2GSNA 4LR2A 5L0EA 5L0KA 2W5XA 3J81R 4ZGAA 4CXSA 3MK1A 2XRGA 3WAWA 4ZG9A 2MZ4A 3OT9A 4FDJA 1ELXA 1URAA 3BDGB 2F5DA 4GTZA 2ISZA 3NKPA 3SZYA 3DYCA 1ELYA 3M8WA 1E33P 4LREA 1ED8A 4UPLA 3Q3QA 4O6JA 5EGHA 1AJBA 5DLVA 1BI1A 4NWXA 1EJJA 3NKNA 3NKOA 2IUCB 4N7TA 4UPIA 4ZG6A 1KHJA 2MVTA 1ZEDA 3IGZB 1G3SA 4UPKA 4B56A 2W5RA 1B1BA 2IUCA 1U8RA 3A52A 3NKRA 1ANIA 4LR9A 1URBA 4LRBA 3TWZA 5DLWA 4HX7A 3M8YA 3T01A 1KHKA 1BI2A 1SHQA 1BI0A 4HX4A 3JAMR 3WAYA 2W8DA 3IDDA 2EV5A 1K7HA 1AJCA 4HV5A 3NVLA 4LRAA 4KAVA 3R61A 3BDFA 3DPCA 5GOVA 1KH5A 2D1GA 3WAXA 4KJGA 2F5FA 5IJQA 5INHA 3MK2A 1AUKA 2F5EA 1O99A 5C66A 2EV0A 1HQAA 2W5WA 4QAXA 3UN5A 1ON1A 1ZEBA 4KAYA 4NWJA 4UPHA 2G9YA 4MY4A 4O5VA 2X98A 1SHNA 1G3WA 2QQ9A 2XR9A 5K4PA 2ANHA 4MHXA 2DTRA 4LR8A 1EW2A 2W8SA 4CXUA 1AJDA 1KHNA 2QQAA 3NKMA 5DLTA 2H09A 3SZZA 1P49A 5KXAA 4KM4A 2GSOA 1KH4A 2EV6A 1HDHA 4GTWA 3GLXA 4TN0A 1ALKA 5LIAA 3TG0A 2RH6A 3MK0A 3J7AW 1Y7AA 3B5QA 3BDHA 3NKQA 3UO0A 5L0BA 1E3CP 1G3YA 3M8ZA 1C0WA 1HJKA 5FLXR 2W5QA 5EGEA 1B8JA 3IGYB 5TJ3A 3UN2A 4CYSA 1ED9A 2GLQA 4LRDA 1EW8A 4HV6A 2QZUA 2F5CA 3J80R 4LR7A 4KJDA 1EQJA 3WBHA 2W5VA 3CMRA 1ZEFA 1ALIA 2ZKTA 1P92A 1G3TA 2MUNA 3LXQA 4ZG7A 1N2LA 5HRTA 5IT9R 2P0TA 4FDIA 4LQYA 1FSUA 1KHLA 2W5SA 1XCVA 5A2QR 1FWZA 3WAVA 3E2DA 2HYGD 2VQRA 1KH9A 4CXKA 4UOPA 4GTXA 2QQBA 4YR1A 4HX8A 1RQ6A 3ED4A 4LRFA 1EW9A 3BDGA 4CYRA 5LRNA 1EI6A 4UOOA 1AJAA 2W5TA 2GSUA 1E2SP 1N2KA 4GTYA
chains in the Genus database with same CATH topology
1KH7A 3UNYA 4LRCA 3M7VA 3UN3A 2IFYA 1ALHA 4MIVA 3T00A 4UORA 5IJSA 1ALJA 5LQQA 3KD8A 3TX0A 3T02A 2M35A 5LRMA 1O98A 5GRRA 1ELZA 1Y6VA 5AJ9A 4LR2A 1E1ZP 1ANJA 2GA3A 2GSNA 5L0EA 5L0KA 2W5XA 4ZGAA 4CXSA 3MK1A 2XRGA 3WAWA 4ZG9A 2MZ4A 3OT9A 4FDJA 1ELXA 1URAA 3BDGB 4GTZA 5GOVA 3NKPA 3SZYA 3DYCA 1ELYA 3M8WA 1E33P 4LREA 1ED8A 4UPLA 3Q3QA 5EGHA 1AJBA 5DLVA 4NWXA 1EJJA 3NKNA 3NKOA 2IUCB 4N7TA 4UPIA 4ZG6A 1KHJA 2MVTA 1ZEDA 3IGZB 4UPKA 4B56A 2W5RA 2IUCA 3A52A 3NKRA 1ANIA 4LR9A 1URBA 4LRBA 3TWZA 5DLWA 3M8YA 3T01A 1KHKA 1E2SP 1SHQA 3WAYA 2W8DA 3IDDA 1K7HA 1AJCA 3NVLA 4LRAA 4KAVA 3DPCA 3BDFA 2D1GA 3WAXA 4KJGA 5INHA 5IJQA 3MK2A 1AUKA 1O99A 5C66A 2W5WA 1HQAA 4QAXA 3UN5A 1ZEBA 4KAYA 4NWJA 4UPHA 2G9YA 4MY4A 2XR9A 2X98A 1SHNA 5K4PA 2ANHA 4MHXA 4LR8A 1EW2A 2W8SA 4CXUA 1AJDA 1KHNA 3NKMA 5DLTA 3SZZA 1P49A 5KXAA 4KM4A 2GSOA 1KH4A 4GTWA 1HDHA 4TN0A 1ALKA 5LIAA 3TG0A 2RH6A 3MK0A 3NKQA 1Y7AA 3B5QA 3BDHA 3UO0A 5L0BA 1E3CP 3M8ZA 1HJKA 2W5QA 5EGEA 5TJ3A 3UN2A 1B8JA 3IGYB 4CYSA 1ED9A 2GLQA 4LRDA 1EW8A 3WBHA 2QZUA 4LR7A 4KJDA 1EQJA 2W5VA 3CMRA 1ZEFA 1ALIA 2ZKTA 2MUNA 3LXQA 4ZG7A 1N2LA 5HRTA 4FDIA 4LQYA 1FSUA 1KHLA 2W5SA 3WAVA 3E2DA 2VQRA 1KH9A 4CXKA 4UOPA 4GTXA 4YR1A 3ED4A 4LRFA 4CYRA 5LRNA 1EW9A 3BDGA 1EI6A 4UOOA 1AJAA 2W5TA 2GSUA 1KH5A 1N2KA 4GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KH7 A;  3UNY A;  4LRC A;  3M7V A;  3UN3 A;  2IFY A;  1ALH A;  4MIV A;  3T00 A;  4UOR A;  5IJS A;  1ALJ A;  5LQQ A;  3KD8 A;  3TX0 A;  3T02 A;  5LRM A;  1O98 A;  5GRR A;  1ELZ A;  1Y6V A;  5AJ9 A;  4LR2 A;  1E1Z P;  1ANJ A;  2GA3 A;  2GSN A;  5L0E A;  5L0K A;  2W5X A;  4ZGA A;  4CXS A;  3MK1 A;  2XRG A;  3WAW A;  4ZG9 A;  3OT9 A;  4FDJ A;  4GTZ A;  1ELX A;  1URA A;  3BDG B;  5GOV A;  3SZY A;  3NKP A;  3DYC A;  1ELY A;  3M8W A;  1E33 P;  4LRE A;  1ED8 A;  4UPL A;  3Q3Q A;  5EGH A;  1AJB A;  5DLV A;  4NWX A;  1EJJ A;  3NKN A;  3NKO A;  2IUC B;  4N7T A;  4UPI A;  4ZG6 A;  1KHJ A;  1ZED A;  3IGZ B;  4UPK A;  4B56 A;  2W5R A;  2IUC A;  3A52 A;  3NKR A;  1ANI A;  4LR9 A;  1URB A;  4LRB A;  3TWZ A;  5DLW A;  3M8Y A;  3T01 A;  1KHK A;  1E2S P;  1SHQ A;  3WAY A;  2W8D A;  3IDD A;  1K7H A;  1AJC A;  3NVL A;  4LRA A;  4KAV A;  3DPC A;  3BDF A;  2D1G A;  3WAX A;  4KJG A;  5INH A;  5IJQ A;  3MK2 A;  1AUK A;  1O99 A;  5C66 A;  2W5W A;  1HQA A;  4QAX A;  3UN5 A;  1ZEB A;  4KAY A;  4NWJ A;  4UPH A;  2G9Y A;  4MY4 A;  2XR9 A;  2X98 A;  1SHN A;  5K4P A;  2ANH A;  4MHX A;  4LR8 A;  1EW2 A;  2W8S A;  4CXU A;  1AJD A;  1KHN A;  3NKM A;  5DLT A;  3SZZ A;  1P49 A;  5KXA A;  4KM4 A;  2GSO A;  1KH4 A;  4GTW A;  1HDH A;  4TN0 A;  1ALK A;  5LIA A;  3TG0 A;  2RH6 A;  3MK0 A;  3NKQ A;  1Y7A A;  3B5Q A;  3BDH A;  3UO0 A;  5L0B A;  1E3C P;  3M8Z A;  1HJK A;  2W5Q A;  5EGE A;  5TJ3 A;  3UN2 A;  1B8J A;  3IGY B;  4CYS A;  1ED9 A;  2GLQ A;  4LRD A;  1EW8 A;  3WBH A;  2QZU A;  4LR7 A;  4KJD A;  1EQJ A;  2W5V A;  3CMR A;  1ZEF A;  1ALI A;  2ZKT A;  3LXQ A;  4ZG7 A;  1N2L A;  5HRT A;  4FDI A;  4LQY A;  1FSU A;  1KHL A;  2W5S A;  3WAV A;  3E2D A;  2VQR A;  1KH9 A;  4CXK A;  4UOP A;  4GTX A;  4YR1 A;  3ED4 A;  4LRF A;  4CYR A;  5LRN A;  1EW9 A;  3BDG A;  1EI6 A;  4UOO A;  1AJA A;  2W5T A;  2GSU A;  1KH5 A;  1N2K A;  4GTY A; 
#chains in the Genus database with same CATH topology
 1BI3 A;  1KH7 A;  3UNY A;  4LRC A;  1DPR A;  3M7V A;  1F5T A;  3UN3 A;  2IFY A;  1ALH A;  4MIV A;  1FX7 A;  3R60 A;  4UOR A;  3T00 A;  5IJS A;  1ALJ A;  5LQQ A;  3KD8 A;  3TX0 A;  2TDX A;  3T02 A;  2M35 A;  2HYF A;  5LRM A;  1ON2 A;  1O98 A;  5GRR A;  1ELZ A;  1Y6V A;  5AJ9 A;  1DDN A;  1E1Z P;  1ANJ A;  2GA3 A;  2GSN A;  4LR2 A;  5L0E A;  5L0K A;  2W5X A;  3J81 R;  4ZGA A;  4CXS A;  3MK1 A;  2XRG A;  3WAW A;  4ZG9 A;  2MZ4 A;  3OT9 A;  4FDJ A;  1ELX A;  1URA A;  3BDG B;  2F5D A;  4GTZ A;  2ISZ A;  3NKP A;  3SZY A;  3DYC A;  1ELY A;  3M8W A;  1E33 P;  4LRE A;  1ED8 A;  4UPL A;  3Q3Q A;  4O6J A;  5EGH A;  1AJB A;  5DLV A;  1BI1 A;  4NWX A;  1EJJ A;  3NKN A;  3NKO A;  2IUC B;  4N7T A;  4UPI A;  4ZG6 A;  1KHJ A;  2MVT A;  1ZED A;  3IGZ B;  1G3S A;  4UPK A;  4B56 A;  2W5R A;  1B1B A;  2IUC A;  1U8R A;  3A52 A;  3NKR A;  1ANI A;  4LR9 A;  1URB A;  4LRB A;  3TWZ A;  5DLW A;  4HX7 A;  3M8Y A;  3T01 A;  1KHK A;  1BI2 A;  1SHQ A;  1BI0 A;  4HX4 A;  3JAM R;  3WAY A;  2W8D A;  3IDD A;  2EV5 A;  1K7H A;  1AJC A;  4HV5 A;  3NVL A;  4LRA A;  4KAV A;  3R61 A;  3BDF A;  3DPC A;  5GOV A;  1KH5 A;  2D1G A;  3WAX A;  4KJG A;  2F5F A;  5IJQ A;  5INH A;  3MK2 A;  1AUK A;  2F5E A;  1O99 A;  5C66 A;  2EV0 A;  1HQA A;  2W5W A;  4QAX A;  3UN5 A;  1ON1 A;  1ZEB A;  4KAY A;  4NWJ A;  4UPH A;  2G9Y A;  4MY4 A;  4O5V A;  2X98 A;  1SHN A;  1G3W A;  2QQ9 A;  2XR9 A;  5K4P A;  2ANH A;  4MHX A;  2DTR A;  4LR8 A;  1EW2 A;  2W8S A;  4CXU A;  1AJD A;  1KHN A;  2QQA A;  3NKM A;  5DLT A;  2H09 A;  3SZZ A;  1P49 A;  5KXA A;  4KM4 A;  2GSO A;  1KH4 A;  2EV6 A;  1HDH A;  4GTW A;  3GLX A;  4TN0 A;  1ALK A;  5LIA A;  3TG0 A;  2RH6 A;  3MK0 A;  3J7A W;  1Y7A A;  3B5Q A;  3BDH A;  3NKQ A;  3UO0 A;  5L0B A;  1E3C P;  1G3Y A;  3M8Z A;  1C0W A;  1HJK A;  5FLX R;  2W5Q A;  5EGE A;  1B8J A;  3IGY B;  5TJ3 A;  3UN2 A;  4CYS A;  1ED9 A;  2GLQ A;  4LRD A;  1EW8 A;  4HV6 A;  2QZU A;  2F5C A;  3J80 R;  4LR7 A;  4KJD A;  1EQJ A;  3WBH A;  2W5V A;  3CMR A;  1ZEF A;  1ALI A;  2ZKT A;  1P92 A;  1G3T A;  2MUN A;  3LXQ A;  4ZG7 A;  1N2L A;  5HRT A;  5IT9 R;  2P0T A;  4FDI A;  4LQY A;  1FSU A;  1KHL A;  2W5S A;  1XCV A;  5A2Q R;  1FWZ A;  3WAV A;  3E2D A;  2HYG D;  2VQR A;  1KH9 A;  4CXK A;  4UOP A;  4GTX A;  2QQB A;  4YR1 A;  4HX8 A;  1RQ6 A;  3ED4 A;  4LRF A;  1EW9 A;  3BDG A;  4CYR A;  5LRN A;  1EI6 A;  4UOO A;  1AJA A;  2W5T A;  2GSU A;  1E2S P;  1N2K A;  4GTY A; 
#chains in the Genus database with same CATH homology
 1KH7 A;  3UNY A;  4LRC A;  3M7V A;  3UN3 A;  2IFY A;  1ALH A;  4MIV A;  3T00 A;  4UOR A;  5IJS A;  1ALJ A;  5LQQ A;  3KD8 A;  3TX0 A;  3T02 A;  2M35 A;  5LRM A;  1O98 A;  5GRR A;  1ELZ A;  1Y6V A;  5AJ9 A;  4LR2 A;  1E1Z P;  1ANJ A;  2GA3 A;  2GSN A;  5L0E A;  5L0K A;  2W5X A;  4ZGA A;  4CXS A;  3MK1 A;  2XRG A;  3WAW A;  4ZG9 A;  2MZ4 A;  3OT9 A;  4FDJ A;  1ELX A;  1URA A;  3BDG B;  4GTZ A;  5GOV A;  3NKP A;  3SZY A;  3DYC A;  1ELY A;  3M8W A;  1E33 P;  4LRE A;  1ED8 A;  4UPL A;  3Q3Q A;  5EGH A;  1AJB A;  5DLV A;  4NWX A;  1EJJ A;  3NKN A;  3NKO A;  2IUC B;  4N7T A;  4UPI A;  4ZG6 A;  1KHJ A;  2MVT A;  1ZED A;  3IGZ B;  4UPK A;  4B56 A;  2W5R A;  2IUC A;  3A52 A;  3NKR A;  1ANI A;  4LR9 A;  1URB A;  4LRB A;  3TWZ A;  5DLW A;  3M8Y A;  3T01 A;  1KHK A;  1E2S P;  1SHQ A;  3WAY A;  2W8D A;  3IDD A;  1K7H A;  1AJC A;  3NVL A;  4LRA A;  4KAV A;  3DPC A;  3BDF A;  2D1G A;  3WAX A;  4KJG A;  5INH A;  5IJQ A;  3MK2 A;  1AUK A;  1O99 A;  5C66 A;  2W5W A;  1HQA A;  4QAX A;  3UN5 A;  1ZEB A;  4KAY A;  4NWJ A;  4UPH A;  2G9Y A;  4MY4 A;  2XR9 A;  2X98 A;  1SHN A;  5K4P A;  2ANH A;  4MHX A;  4LR8 A;  1EW2 A;  2W8S A;  4CXU A;  1AJD A;  1KHN A;  3NKM A;  5DLT A;  3SZZ A;  1P49 A;  5KXA A;  4KM4 A;  2GSO A;  1KH4 A;  4GTW A;  1HDH A;  4TN0 A;  1ALK A;  5LIA A;  3TG0 A;  2RH6 A;  3MK0 A;  3NKQ A;  1Y7A A;  3B5Q A;  3BDH A;  3UO0 A;  5L0B A;  1E3C P;  3M8Z A;  1HJK A;  2W5Q A;  5EGE A;  5TJ3 A;  3UN2 A;  1B8J A;  3IGY B;  4CYS A;  1ED9 A;  2GLQ A;  4LRD A;  1EW8 A;  3WBH A;  2QZU A;  4LR7 A;  4KJD A;  1EQJ A;  2W5V A;  3CMR A;  1ZEF A;  1ALI A;  2ZKT A;  2MUN A;  3LXQ A;  4ZG7 A;  1N2L A;  5HRT A;  4FDI A;  4LQY A;  1FSU A;  1KHL A;  2W5S A;  3WAV A;  3E2D A;  2VQR A;  1KH9 A;  4CXK A;  4UOP A;  4GTX A;  4YR1 A;  3ED4 A;  4LRF A;  4CYR A;  5LRN A;  1EW9 A;  3BDG A;  1EI6 A;  4UOO A;  1AJA A;  2W5T A;  2GSU A;  1KH5 A;  1N2K A;  4GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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