3A52A

Crystal structure of cold-active alkailne phosphatase from psychrophile shewanella sp.
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
Knots found
sequence length
400
structure length
400
Chain Sequence
MGMIIMVGDGMGPAYTSAYRYFQDNPDTEEIEQTVFDRLLVGMASTYPARESGYVTDSAASATALATGFKSYNGAIAVDINKRPLTTIMQMAKARGMSTGVAVTAQVNHATPAAFLTHNESRKNYEAIAADMLKSDADVILGGGRKYFSEALVSQFSAKGYQHITELAQLDSITQPKVLGLFAEVQLPWVIDDTDANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAMAEMQGFANAIEVVEQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISASPASIATHAIAADDWQAGVNQQLGFDVNSTELQQLTNARMQGKSTLEVALKKIIDTRSYTGWTTSGHTGVDVQVFAMGPAADLFKGNQDNTHIAEKMMSLLPKVN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cold-active alkaline phosphatase
publication title Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp.
pubmed rcsb
source organism Shewanella
molecule tags Hydrolase
total genus 147
structure length 400
sequence length 400
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2009-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.40 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 3a52A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3a52A01
2W5WA 3MK2A 3T01A 5INHA 4LR9A 1Y7AA 2W5QA 5EGHA 3KD8A 4CYSA 1KHJA 4UPIA 4MIVA 2GSNA 4CXKA 1HDHA 3UN2A 3A52A 1ALKA 4LR7A 4CXUA 5LRMA 5K4PA 4UPLA 3MK0A 5L0BA 4CXSA 3NKMA 5HRTA 1AJBA 1E1ZP 1URBA 1E3CP 4LREA 3TX0A 4UOOA 5L0EA 2GSOA 1HQAA 1EW2A 1ED8A 5LIAA 2W5SA 3NKPA 2X98A 3NKRA 4NWJA 4UPKA 1ELXA 5IJQA 3TWZA 1EJJA 3BDGA 3OT9A 4NWXA 2XR9A 1ANJA 4FDJA 3BDGB 2RH6A 2D1GA 4UOPA 2W5XA 1ED9A 3DPCA 1ELZA 3WAWA 4ZG9A 4LRDA 4MY4A 3NKNA 5LRNA 5EGEA 4LRBA 1N2KA 5C66A 1ALHA 2W8SA 1Y6VA 3UN3A 5IJSA 3NKQA 3NKOA 3T00A 1ALJA 3IGYB 4LRFA 1EI6A 3LXQA 4KAYA 5GOVA 4MHXA 1AUKA 4YR1A 1ALIA 3DYCA 1AJAA 3SZYA 2IFYA 1O99A 3BDHA 3BDFA 1ANIA 1KH5A 2W5TA 3Q3QA 2W5RA 2XRGA 1KH4A 1KH9A 1N2LA 4KM4A 5DLVA 4B56A 2GSUA 4ZG7A 1HJKA 2GLQA 4ZGAA 1KHKA 1AJDA 4FDIA 2ANHA 4LQYA 2W8DA 4LR8A 1E2SP 1EW8A 1SHQA 2VQRA 1K7HA 2G9YA 3NVLA 4QAXA 5DLWA 2GA3A 2QZUA 3WAXA 1EW9A 1ZEDA 3M7VA 4LRAA 3WAYA 5GRRA 4N7TA 3UN5A 4KJGA 1EQJA 3UO0A 3ED4A 3SZZA 1ELYA 1O98A 1ZEBA 2IUCA 3M8YA 3WAVA 4CYRA 1B8JA 5TJ3A 3IDDA 4KAVA 3UNYA 1KHNA 2W5VA 2IUCB 5AJ9A 1E33P 1ZEFA 2ZKTA 5L0KA 3E2DA 1FSUA 4TN0A 4GTWA 1URAA 4GTXA 1SHNA 3TG0A 3B5QA 5DLTA 1KH7A 4GTYA 4LRCA 4UORA 5LQQA 3WBHA 1KHLA 4LR2A 5KXAA 1AJCA 3M8WA 3CMRA 3MK1A 3T02A 4GTZA 4UPHA 3M8ZA 1P49A 3IGZB 4ZG6A 4KJDA
chains in the Genus database with same CATH superfamily
5A2QR 2W5WA 3MK2A 3T01A 5INHA 4LR9A 1Y7AA 2W5QA 5EGHA 3KD8A 2H09A 4CYSA 2P0TA 1DPRA 1KHJA 4UPIA 4MIVA 2GSNA 2MZ4A 4CXKA 1HDHA 3UN2A 3A52A 1ALKA 4LR7A 4CXUA 5LRMA 5K4PA 4UPLA 3MK0A 5L0BA 4CXSA 1BI3A 3NKMA 5HRTA 1AJBA 1E1ZP 1FWZA 1URBA 1E3CP 4LREA 3TX0A 4UOOA 5L0EA 2GSOA 1HQAA 1EW2A 1ED8A 1B1BA 5LIAA 4HX4A 1BI2A 2W5SA 1DDNA 2EV6A 1BI1A 2HYGD 3NKPA 2X98A 3NKRA 4NWJA 2QQ9A 4UPKA 1ELXA 5IJQA 2F5EA 3TWZA 1EJJA 1RQ6A 3BDGA 3OT9A 4NWXA 1G3YA 2XR9A 1ANJA 2TDXA 4FDJA 3BDGB 2RH6A 2D1GA 4UOPA 2W5XA 1ED9A 3DPCA 1ELZA 3WAWA 3R60A 1FX7A 4ZG9A 4LRDA 4MY4A 3NKNA 5LRNA 2QQBA 5EGEA 4LRBA 1BI0A 5FLXR 1N2KA 5C66A 3GLXA 1ALHA 2W8SA 1C0WA 1Y6VA 4HX8A 3UN3A 5IJSA 3NKQA 3NKOA 3T00A 1ALJA 3IGYB 4LRFA 1EI6A 3LXQA 4KAYA 4HV6A 3J80R 5GOVA 3J81R 4MHXA 1ON2A 1F5TA 2F5DA 1AUKA 4YR1A 1ALIA 3DYCA 1AJAA 3SZYA 2F5CA 2IFYA 1O99A 3BDHA 4O5VA 3BDFA 1ANIA 1KH5A 2W5TA 3Q3QA 2W5RA 1G3SA 2XRGA 2QQAA 1KH4A 1KH9A 1N2LA 4KM4A 5DLVA 4B56A 2GSUA 4ZG7A 1HJKA 2GLQA 2EV0A 4ZGAA 2HYFA 3J7AW 1KHKA 1AJDA 4FDIA 2ANHA 4LQYA 2W8DA 4LR8A 2DTRA 1ON1A 1E2SP 1EW8A 1SHQA 2VQRA 1K7HA 2G9YA 3NVLA 1U8RA 4QAXA 5DLWA 2GA3A 2QZUA 3WAXA 1EW9A 1ZEDA 3M7VA 4HV5A 3JAMR 4LRAA 3WAYA 5GRRA 4N7TA 3UN5A 4KJGA 1EQJA 4HX7A 3ED4A 3SZZA 1ELYA 1O98A 1ZEBA 2IUCA 3M8YA 3UO0A 5IT9R 3WAVA 4CYRA 1B8JA 5TJ3A 3IDDA 4KAVA 3UNYA 2MUNA 4O6JA 1KHNA 2ISZA 2W5VA 1P92A 2IUCB 5AJ9A 2MVTA 1E33P 1ZEFA 2ZKTA 2M35A 5L0KA 3E2DA 1FSUA 4TN0A 4GTWA 1URAA 4GTXA 2F5FA 1G3WA 1SHNA 3TG0A 3B5QA 1G3TA 5DLTA 1KH7A 4GTYA 4LRCA 4UORA 5LQQA 3WBHA 1KHLA 3R61A 4LR2A 1AJCA 5KXAA 3M8WA 3CMRA 1XCVA 3MK1A 4GTZA 3T02A 4UPHA 3M8ZA 2EV5A 1P49A 3IGZB 4ZG6A 4KJDA
chains in the Genus database with same CATH topology
2W5WA 3MK2A 3T01A 5INHA 4LR9A 1Y7AA 2W5QA 5EGHA 3KD8A 4CYSA 1KHJA 4UPIA 4MIVA 2GSNA 2MZ4A 4CXKA 1HDHA 3UN2A 3A52A 1ALKA 4LR7A 4CXUA 5LRMA 5K4PA 4UPLA 3MK0A 5L0BA 4CXSA 3NKMA 5HRTA 1AJBA 1E1ZP 1URBA 1E3CP 4LREA 3TX0A 4UOOA 5L0EA 2GSOA 1HQAA 1EW2A 1ED8A 5LIAA 2W5SA 3NKPA 2X98A 3NKRA 4NWJA 4UPKA 1ELXA 5IJQA 3TWZA 1EJJA 3BDGA 3OT9A 4NWXA 2XR9A 1ANJA 4FDJA 3BDGB 2RH6A 2D1GA 4UOPA 2W5XA 1ED9A 3DPCA 1ELZA 3WAWA 4ZG9A 4LRDA 4MY4A 3NKNA 5LRNA 5EGEA 4LRBA 1N2KA 5C66A 1ALHA 2W8SA 1Y6VA 3UN3A 5IJSA 3NKQA 3NKOA 3T00A 1ALJA 3IGYB 4LRFA 1EI6A 3LXQA 4KAYA 5GOVA 4MHXA 1AUKA 4YR1A 1ALIA 3DYCA 1AJAA 3SZYA 2IFYA 1O99A 3BDHA 3BDFA 1ANIA 1KH5A 2W5TA 3Q3QA 2W5RA 2XRGA 1KH4A 1KH9A 1N2LA 4KM4A 5DLVA 4B56A 2GSUA 4ZG7A 1HJKA 2GLQA 4ZGAA 1KHKA 1AJDA 4FDIA 2ANHA 4LQYA 2W8DA 4LR8A 1E2SP 1EW8A 1SHQA 2VQRA 1K7HA 2G9YA 3NVLA 4QAXA 5DLWA 2GA3A 2QZUA 3WAXA 1EW9A 1ZEDA 3M7VA 4LRAA 3WAYA 5GRRA 4N7TA 3UN5A 4KJGA 1EQJA 3UO0A 3ED4A 3SZZA 1ELYA 1O98A 1ZEBA 2IUCA 3M8YA 3WAVA 4CYRA 1B8JA 5TJ3A 3IDDA 4KAVA 3UNYA 2MUNA 1KHNA 2W5VA 2IUCB 5AJ9A 2MVTA 1E33P 1ZEFA 2ZKTA 2M35A 5L0KA 3E2DA 1FSUA 4TN0A 4GTWA 1URAA 4GTXA 1SHNA 3TG0A 3B5QA 5DLTA 1KH7A 4GTYA 4LRCA 4UORA 5LQQA 3WBHA 1KHLA 4LR2A 5KXAA 1AJCA 3M8WA 3CMRA 3MK1A 3T02A 4GTZA 4UPHA 3M8ZA 1P49A 3IGZB 4ZG6A 4KJDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W5W A;  3MK2 A;  3T01 A;  5INH A;  4LR9 A;  1Y7A A;  2W5Q A;  5EGH A;  3KD8 A;  4CYS A;  1KHJ A;  4UPI A;  4MIV A;  2GSN A;  4CXK A;  1HDH A;  3UN2 A;  3A52 A;  1ALK A;  4LR7 A;  4CXU A;  5LRM A;  5K4P A;  4UPL A;  3MK0 A;  5L0B A;  4CXS A;  3NKM A;  5HRT A;  1AJB A;  1E1Z P;  1URB A;  1E3C P;  4LRE A;  3TX0 A;  4UOO A;  5L0E A;  2GSO A;  1HQA A;  1EW2 A;  1ED8 A;  5LIA A;  2W5S A;  3NKP A;  2X98 A;  3NKR A;  4NWJ A;  4UPK A;  1ELX A;  5IJQ A;  3TWZ A;  1EJJ A;  3BDG A;  3OT9 A;  4NWX A;  2XR9 A;  1ANJ A;  4FDJ A;  3BDG B;  2RH6 A;  2D1G A;  4UOP A;  2W5X A;  1ED9 A;  3DPC A;  1ELZ A;  3WAW A;  4ZG9 A;  4LRD A;  4MY4 A;  3NKN A;  5LRN A;  5EGE A;  4LRB A;  1N2K A;  5C66 A;  1ALH A;  2W8S A;  1Y6V A;  3UN3 A;  5IJS A;  3NKQ A;  3NKO A;  3T00 A;  1ALJ A;  3IGY B;  4LRF A;  1EI6 A;  3LXQ A;  4KAY A;  5GOV A;  4MHX A;  1AUK A;  4YR1 A;  1ALI A;  3DYC A;  1AJA A;  3SZY A;  2IFY A;  1O99 A;  3BDH A;  3BDF A;  1ANI A;  1KH5 A;  2W5T A;  3Q3Q A;  2W5R A;  2XRG A;  1KH4 A;  1KH9 A;  1N2L A;  4KM4 A;  5DLV A;  4B56 A;  2GSU A;  4ZG7 A;  1HJK A;  2GLQ A;  4ZGA A;  1KHK A;  1AJD A;  4FDI A;  2ANH A;  4LQY A;  2W8D A;  4LR8 A;  1E2S P;  1EW8 A;  1SHQ A;  2VQR A;  1K7H A;  2G9Y A;  3NVL A;  4QAX A;  5DLW A;  2GA3 A;  2QZU A;  3WAX A;  1EW9 A;  1ZED A;  3M7V A;  4LRA A;  3WAY A;  5GRR A;  4N7T A;  3UN5 A;  4KJG A;  1EQJ A;  3UO0 A;  3ED4 A;  3SZZ A;  1ELY A;  1O98 A;  1ZEB A;  2IUC A;  3M8Y A;  3WAV A;  4CYR A;  1B8J A;  5TJ3 A;  3IDD A;  4KAV A;  3UNY A;  1KHN A;  2W5V A;  2IUC B;  5AJ9 A;  1E33 P;  1ZEF A;  2ZKT A;  5L0K A;  3E2D A;  1FSU A;  4TN0 A;  4GTW A;  1URA A;  4GTX A;  1SHN A;  3TG0 A;  3B5Q A;  5DLT A;  1KH7 A;  4GTY A;  4LRC A;  4UOR A;  5LQQ A;  3WBH A;  1KHL A;  4LR2 A;  5KXA A;  1AJC A;  3M8W A;  3CMR A;  3MK1 A;  3T02 A;  4GTZ A;  4UPH A;  3M8Z A;  1P49 A;  3IGZ B;  4ZG6 A;  4KJD A; 
#chains in the Genus database with same CATH topology
 5A2Q R;  2W5W A;  3MK2 A;  3T01 A;  5INH A;  4LR9 A;  1Y7A A;  2W5Q A;  5EGH A;  3KD8 A;  2H09 A;  4CYS A;  2P0T A;  1DPR A;  1KHJ A;  4UPI A;  4MIV A;  2GSN A;  2MZ4 A;  4CXK A;  1HDH A;  3UN2 A;  3A52 A;  1ALK A;  4LR7 A;  4CXU A;  5LRM A;  5K4P A;  4UPL A;  3MK0 A;  5L0B A;  4CXS A;  1BI3 A;  3NKM A;  5HRT A;  1AJB A;  1E1Z P;  1FWZ A;  1URB A;  1E3C P;  4LRE A;  3TX0 A;  4UOO A;  5L0E A;  2GSO A;  1HQA A;  1EW2 A;  1ED8 A;  1B1B A;  5LIA A;  4HX4 A;  1BI2 A;  2W5S A;  1DDN A;  2EV6 A;  1BI1 A;  2HYG D;  3NKP A;  2X98 A;  3NKR A;  4NWJ A;  2QQ9 A;  4UPK A;  1ELX A;  5IJQ A;  2F5E A;  3TWZ A;  1EJJ A;  1RQ6 A;  3BDG A;  3OT9 A;  4NWX A;  1G3Y A;  2XR9 A;  1ANJ A;  2TDX A;  4FDJ A;  3BDG B;  2RH6 A;  2D1G A;  4UOP A;  2W5X A;  1ED9 A;  3DPC A;  1ELZ A;  3WAW A;  3R60 A;  1FX7 A;  4ZG9 A;  4LRD A;  4MY4 A;  3NKN A;  5LRN A;  2QQB A;  5EGE A;  4LRB A;  1BI0 A;  5FLX R;  1N2K A;  5C66 A;  3GLX A;  1ALH A;  2W8S A;  1C0W A;  1Y6V A;  4HX8 A;  3UN3 A;  5IJS A;  3NKQ A;  3NKO A;  3T00 A;  1ALJ A;  3IGY B;  4LRF A;  1EI6 A;  3LXQ A;  4KAY A;  4HV6 A;  3J80 R;  5GOV A;  3J81 R;  4MHX A;  1ON2 A;  1F5T A;  2F5D A;  1AUK A;  4YR1 A;  1ALI A;  3DYC A;  1AJA A;  3SZY A;  2F5C A;  2IFY A;  1O99 A;  3BDH A;  4O5V A;  3BDF A;  1ANI A;  1KH5 A;  2W5T A;  3Q3Q A;  2W5R A;  1G3S A;  2XRG A;  2QQA A;  1KH4 A;  1KH9 A;  1N2L A;  4KM4 A;  5DLV A;  4B56 A;  2GSU A;  4ZG7 A;  1HJK A;  2GLQ A;  2EV0 A;  4ZGA A;  2HYF A;  3J7A W;  1KHK A;  1AJD A;  4FDI A;  2ANH A;  4LQY A;  2W8D A;  4LR8 A;  2DTR A;  1ON1 A;  1E2S P;  1EW8 A;  1SHQ A;  2VQR A;  1K7H A;  2G9Y A;  3NVL A;  1U8R A;  4QAX A;  5DLW A;  2GA3 A;  2QZU A;  3WAX A;  1EW9 A;  1ZED A;  3M7V A;  4HV5 A;  3JAM R;  4LRA A;  3WAY A;  5GRR A;  4N7T A;  3UN5 A;  4KJG A;  1EQJ A;  4HX7 A;  3ED4 A;  3SZZ A;  1ELY A;  1O98 A;  1ZEB A;  2IUC A;  3M8Y A;  3UO0 A;  5IT9 R;  3WAV A;  4CYR A;  1B8J A;  5TJ3 A;  3IDD A;  4KAV A;  3UNY A;  2MUN A;  4O6J A;  1KHN A;  2ISZ A;  2W5V A;  1P92 A;  2IUC B;  5AJ9 A;  2MVT A;  1E33 P;  1ZEF A;  2ZKT A;  2M35 A;  5L0K A;  3E2D A;  1FSU A;  4TN0 A;  4GTW A;  1URA A;  4GTX A;  2F5F A;  1G3W A;  1SHN A;  3TG0 A;  3B5Q A;  1G3T A;  5DLT A;  1KH7 A;  4GTY A;  4LRC A;  4UOR A;  5LQQ A;  3WBH A;  1KHL A;  3R61 A;  4LR2 A;  1AJC A;  5KXA A;  3M8W A;  3CMR A;  1XCV A;  3MK1 A;  4GTZ A;  3T02 A;  4UPH A;  3M8Z A;  2EV5 A;  1P49 A;  3IGZ B;  4ZG6 A;  4KJD A; 
#chains in the Genus database with same CATH homology
 2W5W A;  3MK2 A;  3T01 A;  5INH A;  4LR9 A;  1Y7A A;  2W5Q A;  5EGH A;  3KD8 A;  4CYS A;  1KHJ A;  4UPI A;  4MIV A;  2GSN A;  2MZ4 A;  4CXK A;  1HDH A;  3UN2 A;  3A52 A;  1ALK A;  4LR7 A;  4CXU A;  5LRM A;  5K4P A;  4UPL A;  3MK0 A;  5L0B A;  4CXS A;  3NKM A;  5HRT A;  1AJB A;  1E1Z P;  1URB A;  1E3C P;  4LRE A;  3TX0 A;  4UOO A;  5L0E A;  2GSO A;  1HQA A;  1EW2 A;  1ED8 A;  5LIA A;  2W5S A;  3NKP A;  2X98 A;  3NKR A;  4NWJ A;  4UPK A;  1ELX A;  5IJQ A;  3TWZ A;  1EJJ A;  3BDG A;  3OT9 A;  4NWX A;  2XR9 A;  1ANJ A;  4FDJ A;  3BDG B;  2RH6 A;  2D1G A;  4UOP A;  2W5X A;  1ED9 A;  3DPC A;  1ELZ A;  3WAW A;  4ZG9 A;  4LRD A;  4MY4 A;  3NKN A;  5LRN A;  5EGE A;  4LRB A;  1N2K A;  5C66 A;  1ALH A;  2W8S A;  1Y6V A;  3UN3 A;  5IJS A;  3NKQ A;  3NKO A;  3T00 A;  1ALJ A;  3IGY B;  4LRF A;  1EI6 A;  3LXQ A;  4KAY A;  5GOV A;  4MHX A;  1AUK A;  4YR1 A;  1ALI A;  3DYC A;  1AJA A;  3SZY A;  2IFY A;  1O99 A;  3BDH A;  3BDF A;  1ANI A;  1KH5 A;  2W5T A;  3Q3Q A;  2W5R A;  2XRG A;  1KH4 A;  1KH9 A;  1N2L A;  4KM4 A;  5DLV A;  4B56 A;  2GSU A;  4ZG7 A;  1HJK A;  2GLQ A;  4ZGA A;  1KHK A;  1AJD A;  4FDI A;  2ANH A;  4LQY A;  2W8D A;  4LR8 A;  1E2S P;  1EW8 A;  1SHQ A;  2VQR A;  1K7H A;  2G9Y A;  3NVL A;  4QAX A;  5DLW A;  2GA3 A;  2QZU A;  3WAX A;  1EW9 A;  1ZED A;  3M7V A;  4LRA A;  3WAY A;  5GRR A;  4N7T A;  3UN5 A;  4KJG A;  1EQJ A;  3UO0 A;  3ED4 A;  3SZZ A;  1ELY A;  1O98 A;  1ZEB A;  2IUC A;  3M8Y A;  3WAV A;  4CYR A;  1B8J A;  5TJ3 A;  3IDD A;  4KAV A;  3UNY A;  2MUN A;  1KHN A;  2W5V A;  2IUC B;  5AJ9 A;  2MVT A;  1E33 P;  1ZEF A;  2ZKT A;  2M35 A;  5L0K A;  3E2D A;  1FSU A;  4TN0 A;  4GTW A;  1URA A;  4GTX A;  1SHN A;  3TG0 A;  3B5Q A;  5DLT A;  1KH7 A;  4GTY A;  4LRC A;  4UOR A;  5LQQ A;  3WBH A;  1KHL A;  4LR2 A;  5KXA A;  1AJC A;  3M8W A;  3CMR A;  3MK1 A;  3T02 A;  4GTZ A;  4UPH A;  3M8Z A;  1P49 A;  3IGZ B;  4ZG6 A;  4KJD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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