3A52A

Crystal structure of cold-active alkailne phosphatase from psychrophile shewanella sp.
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
Knots found
sequence length
400
structure length
400
Chain Sequence
MGMIIMVGDGMGPAYTSAYRYFQDNPDTEEIEQTVFDRLLVGMASTYPARESGYVTDSAASATALATGFKSYNGAIAVDINKRPLTTIMQMAKARGMSTGVAVTAQVNHATPAAFLTHNESRKNYEAIAADMLKSDADVILGGGRKYFSEALVSQFSAKGYQHITELAQLDSITQPKVLGLFAEVQLPWVIDDTDANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAMAEMQGFANAIEVVEQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISASPASIATHAIAADDWQAGVNQQLGFDVNSTELQQLTNARMQGKSTLEVALKKIIDTRSYTGWTTSGHTGVDVQVFAMGPAADLFKGNQDNTHIAEKMMSLLPKVN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp.
pubmed rcsb
source organism Shewanella
molecule tags Hydrolase
molecule keywords Cold-active alkaline phosphatase
total genus 147
structure length 400
sequence length 400
chains with identical sequence B
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2009-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00245 Alk_phosphatase Alkaline phosphatase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.60.40 Mainly Alpha Orthogonal Bundle Diphtheria Toxin Repressor; domain 2 Diphtheria Toxin Repressor; domain 2 3a52A02
3.40.720.10 Alpha Beta 3-Layer(aba) Sandwich Alkaline Phosphatase, subunit A Alkaline Phosphatase, subunit A 3a52A01
1ANJA 3Q3QA 4NWXA 5LQQA 1AJAA 4UOPA 4CYRA 5GRRA 3ED4A 1SHQA 1EQJA 1Y7AA 1EI6A 5EGEA 4TN0A 1KH4A 5INHA 1O99A 1ALIA 1ED9A 4KM4A 3CMRA 1P49A 5AJ9A 2ANHA 1N2KA 1HJKA 3IGZB 1SHNA 3IGYB 1EW8A 4GTXA 2G9YA 5DLWA 2W5RA 1E2SP 5DLVA 1Y6VA 3NVLA 3NKNA 3DYCA 3KD8A 1KH5A 1O98A 3WBHA 1N2LA 5GOVA 3UO0A 4UOOA 4KJDA 3M7VA 3UN3A 5L0KA 4LR2A 1B8JA 3MK0A 4ZG9A 3MK1A 1ELZA 1HDHA 5EGHA 4N7TA 1ED8A 3SZYA 2GSNA 1ANIA 3TG0A 1ZEFA 1EW9A 3TX0A 3M8ZA 4YR1A 3WAYA 2GSUA 2GLQA 3T02A 4KAVA 4CXUA 2W5QA 4NWJA 3BDGB 4LRDA 2IFYA 3E2DA 1E33P 4B56A 3M8YA 5LRMA 1KH9A 4UPHA 2QZUA 3NKOA 3M8WA 5K4PA 3LXQA 4CXSA 1AUKA 2XR9A 1KH7A 1E1ZP 1ALKA 1URAA 2W8SA 1AJCA 3MK2A 3TWZA 3SZZA 1EW2A 2GSOA 5HRTA 3WAXA 3NKQA 2W5SA 5IJSA 4FDIA 1E3CP 3B5QA 3DPCA 4LREA 3UNYA 4CXKA 1ALJA 4UPIA 1HQAA 4LR7A 1URBA 1KHJA 1KHLA 1EJJA 4UORA 2D1GA 1ALHA 2W5WA 4GTZA 1AJDA 5TJ3A 4LQYA 5L0EA 5LRNA 4UPKA 1FSUA 2W5VA 3NKMA 3BDHA 1ELXA 4ZG7A 1K7HA 3NKPA 5KXAA 2XRGA 3NKRA 4MIVA 4LRAA 1KHKA 2IUCA 5C66A 3IDDA 4LRCA 2RH6A 4MHXA 4ZGAA 4CYSA 4LRBA 4LR8A 1AJBA 2IUCB 3OT9A 3T00A 4KJGA 4LR9A 4KAYA 2W5TA 4QAXA 1ZEDA 4GTWA 3WAWA 3WAVA 2W5XA 3T01A 4MY4A 3UN5A 2VQRA 4LRFA 1KHNA 5IJQA 5LIAA 2ZKTA 3A52A 5L0BA 2X98A 3BDGA 5DLTA 2GA3A 1ELYA 3BDFA 4UPLA 3UN2A 1ZEBA 4GTYA 2W8DA 4FDJA 4ZG6A
chains in the Genus database with same CATH superfamily
1ANJA 3Q3QA 1BI1A 4NWXA 5LQQA 1AJAA 4UOPA 4CYRA 5GRRA 3ED4A 2MZ4A 1SHQA 1EQJA 3J80R 2P0TA 1C0WA 1EI6A 1G3WA 1Y7AA 5EGEA 4TN0A 4HX8A 1KH4A 5INHA 1O99A 1BI2A 1ALIA 1ED9A 4KM4A 3CMRA 1P49A 5AJ9A 2ANHA 2EV5A 1N2KA 1HJKA 3IGZB 2QQAA 1SHNA 3IGYB 4O6JA 1EW8A 4GTXA 2G9YA 5DLWA 1FX7A 1E2SP 2W5RA 5DLVA 1G3SA 1Y6VA 3NVLA 3NKNA 3DYCA 3KD8A 1KH5A 1O98A 3WBHA 3GLXA 1N2LA 5GOVA 3UO0A 4UOOA 4KJDA 2F5DA 3M7VA 3UN3A 4LR2A 1B8JA 5L0KA 2EV6A 3MK0A 4ZG9A 3MK1A 1ELZA 1HDHA 5EGHA 2QQBA 4N7TA 1ED8A 3SZYA 1G3YA 2GSNA 1ANIA 3TG0A 1ON1A 1BI0A 1ZEFA 1EW9A 3TX0A 3M8ZA 4YR1A 3WAYA 2GSUA 2GLQA 3T02A 4KAVA 4CXUA 2W5QA 4NWJA 1U8RA 3BDGB 4LRDA 2IFYA 3E2DA 4O5VA 1E33P 4B56A 2MUNA 3M8YA 5LRMA 4HV5A 5A2QR 1KH9A 1ON2A 4UPHA 2QZUA 4HX7A 3NKOA 1FWZA 3M8WA 5K4PA 3LXQA 4CXSA 2ISZA 1AUKA 2XR9A 1B1BA 1KH7A 1ALKA 1E1ZP 1URAA 2W8SA 1AJCA 3MK2A 3TWZA 2EV0A 3SZZA 1EW2A 2GSOA 5HRTA 3WAXA 3NKQA 3JAMR 2W5SA 5IJSA 4FDIA 1E3CP 3B5QA 3DPCA 4LREA 3UNYA 4CXKA 1ALJA 4UPIA 2H09A 1HQAA 4LR7A 2F5EA 2HYFA 1URBA 1KHJA 1KHLA 1EJJA 4UORA 2D1GA 1ALHA 2W5WA 4GTZA 4HX4A 1AJDA 4LQYA 5TJ3A 5L0EA 5LRNA 4UPKA 1FSUA 2W5VA 3NKMA 3BDHA 1ELXA 4ZG7A 1K7HA 3NKPA 5FLXR 3R60A 2HYGD 2DTRA 5KXAA 1DPRA 2XRGA 1G3TA 3NKRA 4MIVA 4LRAA 1KHKA 2MVTA 2IUCA 5C66A 3IDDA 4LRCA 2RH6A 4MHXA 2F5FA 4HV6A 4ZGAA 4CYSA 4LRBA 4LR8A 1AJBA 2IUCB 1BI3A 5IT9R 3OT9A 3T00A 4KJGA 2M35A 4LR9A 4KAYA 2W5TA 4QAXA 2TDXA 1ZEDA 1F5TA 4GTWA 3WAWA 2QQ9A 3WAVA 3J81R 1P92A 2W5XA 4MY4A 3T01A 2VQRA 4LRFA 3UN5A 1KHNA 1DDNA 5IJQA 5LIAA 2ZKTA 3A52A 3J7AW 5L0BA 2X98A 3BDGA 1RQ6A 5DLTA 3R61A 2GA3A 1ELYA 3BDFA 2F5CA 3UN2A 4UPLA 1ZEBA 4GTYA 2W8DA 4FDJA 1XCVA 4ZG6A
chains in the Genus database with same CATH topology
1ANJA 3Q3QA 4NWXA 5LQQA 1AJAA 4UOPA 4CYRA 5GRRA 3ED4A 2MZ4A 1SHQA 1EQJA 1Y7AA 1EI6A 5EGEA 4TN0A 1KH4A 5INHA 1O99A 1ALIA 1ED9A 4KM4A 3CMRA 1P49A 5AJ9A 2ANHA 1N2KA 1HJKA 3IGZB 1SHNA 3IGYB 1EW8A 4GTXA 2G9YA 5DLWA 2W5RA 1E2SP 5DLVA 1Y6VA 3NVLA 3NKNA 3DYCA 3KD8A 1KH5A 1O98A 3WBHA 1N2LA 5GOVA 3UO0A 4UOOA 4KJDA 3M7VA 3UN3A 5L0KA 4LR2A 1B8JA 3MK0A 4ZG9A 3MK1A 1ELZA 1HDHA 5EGHA 4N7TA 1ED8A 3SZYA 2GSNA 1ANIA 3TG0A 1ZEFA 1EW9A 3TX0A 3M8ZA 4YR1A 3WAYA 2GSUA 2GLQA 3T02A 4KAVA 4CXUA 2W5QA 4NWJA 3BDGB 4LRDA 2IFYA 3E2DA 1E33P 4B56A 2MUNA 3M8YA 5LRMA 1KH9A 4UPHA 2QZUA 3NKOA 3M8WA 5K4PA 3LXQA 4CXSA 1AUKA 2XR9A 1KH7A 1ALKA 1E1ZP 1URAA 2W8SA 1AJCA 3MK2A 3TWZA 3SZZA 1EW2A 2GSOA 5HRTA 3WAXA 3NKQA 2W5SA 5IJSA 4FDIA 1E3CP 3B5QA 3DPCA 4LREA 3UNYA 4CXKA 1ALJA 4UPIA 1HQAA 4LR7A 1URBA 1KHJA 1KHLA 1EJJA 4UORA 2D1GA 1ALHA 2W5WA 4GTZA 1AJDA 5TJ3A 4LQYA 5L0EA 5LRNA 4UPKA 1FSUA 2W5VA 3NKMA 3BDHA 1ELXA 4ZG7A 1K7HA 3NKPA 5KXAA 2XRGA 3NKRA 4MIVA 4LRAA 1KHKA 2MVTA 2IUCA 5C66A 3IDDA 4LRCA 2RH6A 4MHXA 4ZGAA 4CYSA 4LRBA 4LR8A 1AJBA 2IUCB 3OT9A 3T00A 4KJGA 2M35A 4LR9A 4KAYA 2W5TA 4QAXA 1ZEDA 4GTWA 3WAWA 3WAVA 2W5XA 3T01A 4MY4A 3UN5A 2VQRA 4LRFA 1KHNA 5IJQA 5LIAA 2ZKTA 3A52A 5L0BA 2X98A 3BDGA 5DLTA 2GA3A 1ELYA 3BDFA 4UPLA 3UN2A 1ZEBA 4GTYA 2W8DA 4FDJA 4ZG6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ANJ A;  3Q3Q A;  4NWX A;  5LQQ A;  1AJA A;  4UOP A;  4CYR A;  5GRR A;  3ED4 A;  1SHQ A;  1EQJ A;  1Y7A A;  1EI6 A;  5EGE A;  4TN0 A;  1KH4 A;  5INH A;  1O99 A;  1ALI A;  1ED9 A;  4KM4 A;  3CMR A;  1P49 A;  5AJ9 A;  2ANH A;  1N2K A;  1HJK A;  3IGZ B;  1SHN A;  3IGY B;  1EW8 A;  4GTX A;  2G9Y A;  5DLW A;  2W5R A;  1E2S P;  5DLV A;  1Y6V A;  3NVL A;  3NKN A;  3DYC A;  3KD8 A;  1KH5 A;  1O98 A;  3WBH A;  1N2L A;  5GOV A;  3UO0 A;  4UOO A;  4KJD A;  3M7V A;  3UN3 A;  5L0K A;  4LR2 A;  1B8J A;  3MK0 A;  4ZG9 A;  3MK1 A;  1ELZ A;  1HDH A;  5EGH A;  4N7T A;  1ED8 A;  3SZY A;  2GSN A;  1ANI A;  3TG0 A;  1ZEF A;  1EW9 A;  3TX0 A;  3M8Z A;  4YR1 A;  3WAY A;  2GSU A;  2GLQ A;  3T02 A;  4KAV A;  4CXU A;  2W5Q A;  4NWJ A;  3BDG B;  4LRD A;  2IFY A;  3E2D A;  1E33 P;  4B56 A;  3M8Y A;  5LRM A;  1KH9 A;  4UPH A;  2QZU A;  3NKO A;  3M8W A;  5K4P A;  3LXQ A;  4CXS A;  1AUK A;  2XR9 A;  1KH7 A;  1E1Z P;  1ALK A;  1URA A;  2W8S A;  1AJC A;  3MK2 A;  3TWZ A;  3SZZ A;  1EW2 A;  2GSO A;  5HRT A;  3WAX A;  3NKQ A;  2W5S A;  5IJS A;  4FDI A;  1E3C P;  3B5Q A;  3DPC A;  4LRE A;  3UNY A;  4CXK A;  1ALJ A;  4UPI A;  1HQA A;  4LR7 A;  1URB A;  1KHJ A;  1KHL A;  1EJJ A;  4UOR A;  2D1G A;  1ALH A;  2W5W A;  4GTZ A;  1AJD A;  5TJ3 A;  4LQY A;  5L0E A;  5LRN A;  4UPK A;  1FSU A;  2W5V A;  3NKM A;  3BDH A;  1ELX A;  4ZG7 A;  1K7H A;  3NKP A;  5KXA A;  2XRG A;  3NKR A;  4MIV A;  4LRA A;  1KHK A;  2IUC A;  5C66 A;  3IDD A;  4LRC A;  2RH6 A;  4MHX A;  4ZGA A;  4CYS A;  4LRB A;  4LR8 A;  1AJB A;  2IUC B;  3OT9 A;  3T00 A;  4KJG A;  4LR9 A;  4KAY A;  2W5T A;  4QAX A;  1ZED A;  4GTW A;  3WAW A;  3WAV A;  2W5X A;  3T01 A;  4MY4 A;  3UN5 A;  2VQR A;  4LRF A;  1KHN A;  5IJQ A;  5LIA A;  2ZKT A;  3A52 A;  5L0B A;  2X98 A;  3BDG A;  5DLT A;  2GA3 A;  1ELY A;  3BDF A;  4UPL A;  3UN2 A;  1ZEB A;  4GTY A;  2W8D A;  4FDJ A;  4ZG6 A; 
#chains in the Genus database with same CATH topology
 1ANJ A;  3Q3Q A;  1BI1 A;  4NWX A;  5LQQ A;  1AJA A;  4UOP A;  4CYR A;  5GRR A;  3ED4 A;  2MZ4 A;  1SHQ A;  1EQJ A;  3J80 R;  2P0T A;  1C0W A;  1EI6 A;  1G3W A;  1Y7A A;  5EGE A;  4TN0 A;  4HX8 A;  1KH4 A;  5INH A;  1O99 A;  1BI2 A;  1ALI A;  1ED9 A;  4KM4 A;  3CMR A;  1P49 A;  5AJ9 A;  2ANH A;  2EV5 A;  1N2K A;  1HJK A;  3IGZ B;  2QQA A;  1SHN A;  3IGY B;  4O6J A;  1EW8 A;  4GTX A;  2G9Y A;  5DLW A;  1FX7 A;  1E2S P;  2W5R A;  5DLV A;  1G3S A;  1Y6V A;  3NVL A;  3NKN A;  3DYC A;  3KD8 A;  1KH5 A;  1O98 A;  3WBH A;  3GLX A;  1N2L A;  5GOV A;  3UO0 A;  4UOO A;  4KJD A;  2F5D A;  3M7V A;  3UN3 A;  4LR2 A;  1B8J A;  5L0K A;  2EV6 A;  3MK0 A;  4ZG9 A;  3MK1 A;  1ELZ A;  1HDH A;  5EGH A;  2QQB A;  4N7T A;  1ED8 A;  3SZY A;  1G3Y A;  2GSN A;  1ANI A;  3TG0 A;  1ON1 A;  1BI0 A;  1ZEF A;  1EW9 A;  3TX0 A;  3M8Z A;  4YR1 A;  3WAY A;  2GSU A;  2GLQ A;  3T02 A;  4KAV A;  4CXU A;  2W5Q A;  4NWJ A;  1U8R A;  3BDG B;  4LRD A;  2IFY A;  3E2D A;  4O5V A;  1E33 P;  4B56 A;  2MUN A;  3M8Y A;  5LRM A;  4HV5 A;  5A2Q R;  1KH9 A;  1ON2 A;  4UPH A;  2QZU A;  4HX7 A;  3NKO A;  1FWZ A;  3M8W A;  5K4P A;  3LXQ A;  4CXS A;  2ISZ A;  1AUK A;  2XR9 A;  1B1B A;  1KH7 A;  1ALK A;  1E1Z P;  1URA A;  2W8S A;  1AJC A;  3MK2 A;  3TWZ A;  2EV0 A;  3SZZ A;  1EW2 A;  2GSO A;  5HRT A;  3WAX A;  3NKQ A;  3JAM R;  2W5S A;  5IJS A;  4FDI A;  1E3C P;  3B5Q A;  3DPC A;  4LRE A;  3UNY A;  4CXK A;  1ALJ A;  4UPI A;  2H09 A;  1HQA A;  4LR7 A;  2F5E A;  2HYF A;  1URB A;  1KHJ A;  1KHL A;  1EJJ A;  4UOR A;  2D1G A;  1ALH A;  2W5W A;  4GTZ A;  4HX4 A;  1AJD A;  4LQY A;  5TJ3 A;  5L0E A;  5LRN A;  4UPK A;  1FSU A;  2W5V A;  3NKM A;  3BDH A;  1ELX A;  4ZG7 A;  1K7H A;  3NKP A;  5FLX R;  3R60 A;  2HYG D;  2DTR A;  5KXA A;  1DPR A;  2XRG A;  1G3T A;  3NKR A;  4MIV A;  4LRA A;  1KHK A;  2MVT A;  2IUC A;  5C66 A;  3IDD A;  4LRC A;  2RH6 A;  4MHX A;  2F5F A;  4HV6 A;  4ZGA A;  4CYS A;  4LRB A;  4LR8 A;  1AJB A;  2IUC B;  1BI3 A;  5IT9 R;  3OT9 A;  3T00 A;  4KJG A;  2M35 A;  4LR9 A;  4KAY A;  2W5T A;  4QAX A;  2TDX A;  1ZED A;  1F5T A;  4GTW A;  3WAW A;  2QQ9 A;  3WAV A;  3J81 R;  1P92 A;  2W5X A;  4MY4 A;  3T01 A;  2VQR A;  4LRF A;  3UN5 A;  1KHN A;  1DDN A;  5IJQ A;  5LIA A;  2ZKT A;  3A52 A;  3J7A W;  5L0B A;  2X98 A;  3BDG A;  1RQ6 A;  5DLT A;  3R61 A;  2GA3 A;  1ELY A;  3BDF A;  2F5C A;  3UN2 A;  4UPL A;  1ZEB A;  4GTY A;  2W8D A;  4FDJ A;  1XCV A;  4ZG6 A; 
#chains in the Genus database with same CATH homology
 1ANJ A;  3Q3Q A;  4NWX A;  5LQQ A;  1AJA A;  4UOP A;  4CYR A;  5GRR A;  3ED4 A;  2MZ4 A;  1SHQ A;  1EQJ A;  1Y7A A;  1EI6 A;  5EGE A;  4TN0 A;  1KH4 A;  5INH A;  1O99 A;  1ALI A;  1ED9 A;  4KM4 A;  3CMR A;  1P49 A;  5AJ9 A;  2ANH A;  1N2K A;  1HJK A;  3IGZ B;  1SHN A;  3IGY B;  1EW8 A;  4GTX A;  2G9Y A;  5DLW A;  2W5R A;  1E2S P;  5DLV A;  1Y6V A;  3NVL A;  3NKN A;  3DYC A;  3KD8 A;  1KH5 A;  1O98 A;  3WBH A;  1N2L A;  5GOV A;  3UO0 A;  4UOO A;  4KJD A;  3M7V A;  3UN3 A;  5L0K A;  4LR2 A;  1B8J A;  3MK0 A;  4ZG9 A;  3MK1 A;  1ELZ A;  1HDH A;  5EGH A;  4N7T A;  1ED8 A;  3SZY A;  2GSN A;  1ANI A;  3TG0 A;  1ZEF A;  1EW9 A;  3TX0 A;  3M8Z A;  4YR1 A;  3WAY A;  2GSU A;  2GLQ A;  3T02 A;  4KAV A;  4CXU A;  2W5Q A;  4NWJ A;  3BDG B;  4LRD A;  2IFY A;  3E2D A;  1E33 P;  4B56 A;  2MUN A;  3M8Y A;  5LRM A;  1KH9 A;  4UPH A;  2QZU A;  3NKO A;  3M8W A;  5K4P A;  3LXQ A;  4CXS A;  1AUK A;  2XR9 A;  1KH7 A;  1ALK A;  1E1Z P;  1URA A;  2W8S A;  1AJC A;  3MK2 A;  3TWZ A;  3SZZ A;  1EW2 A;  2GSO A;  5HRT A;  3WAX A;  3NKQ A;  2W5S A;  5IJS A;  4FDI A;  1E3C P;  3B5Q A;  3DPC A;  4LRE A;  3UNY A;  4CXK A;  1ALJ A;  4UPI A;  1HQA A;  4LR7 A;  1URB A;  1KHJ A;  1KHL A;  1EJJ A;  4UOR A;  2D1G A;  1ALH A;  2W5W A;  4GTZ A;  1AJD A;  5TJ3 A;  4LQY A;  5L0E A;  5LRN A;  4UPK A;  1FSU A;  2W5V A;  3NKM A;  3BDH A;  1ELX A;  4ZG7 A;  1K7H A;  3NKP A;  5KXA A;  2XRG A;  3NKR A;  4MIV A;  4LRA A;  1KHK A;  2MVT A;  2IUC A;  5C66 A;  3IDD A;  4LRC A;  2RH6 A;  4MHX A;  4ZGA A;  4CYS A;  4LRB A;  4LR8 A;  1AJB A;  2IUC B;  3OT9 A;  3T00 A;  4KJG A;  2M35 A;  4LR9 A;  4KAY A;  2W5T A;  4QAX A;  1ZED A;  4GTW A;  3WAW A;  3WAV A;  2W5X A;  3T01 A;  4MY4 A;  3UN5 A;  2VQR A;  4LRF A;  1KHN A;  5IJQ A;  5LIA A;  2ZKT A;  3A52 A;  5L0B A;  2X98 A;  3BDG A;  5DLT A;  2GA3 A;  1ELY A;  3BDF A;  4UPL A;  3UN2 A;  1ZEB A;  4GTY A;  2W8D A;  4FDJ A;  4ZG6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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