The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
222
|
structure length |
211
|
Chain Sequence |
LVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEARWEHVMSDEVERRLVKVLKDVSRSPFGNPIPGLDELGVPGTRVIDAATSMPRKVRIVQINEIFQVETDQFTQLLDADIRVGSEVEIVDHITLSHNGKDVELLDDLAHTIRIEE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Motion of the DNA-binding domain with respect to the core of the diphtheria toxin repressor (DtxR) revealed in the crystal structures of apo- and holo-DtxR.
pubmed doi rcsb |
| source organism |
Corynebacterium diphtheriae
|
| molecule tags |
Repressor
|
| molecule keywords |
DIPHTHERIA TOXIN REPRESSOR
|
| total genus |
60
|
| structure length |
211
|
| sequence length |
222
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1998-06-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01325 | Fe_dep_repress | Iron dependent repressor, N-terminal DNA binding domain |
| A | PF02742 | Fe_dep_repr_C | Iron dependent repressor, metal binding and dimerisation domain |
| A | PF18357 | DtxR | Diphteria toxin repressor SH3 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | ||
| Mainly Alpha | Orthogonal Bundle | Diphtheria Toxin Repressor; domain 2 | Iron dependent repressor, metal binding and dimerisation domain | ||
| Mainly Beta | Roll | SH3 type barrels. | SH3 type barrels. |
