1AA2 | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	108
structure length	108
Chain Sequence	KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cytoskeleton
source organism	Homo sapiens
publication title	Crystal structure of a calponin homology domain. pubmed doi rcsb
molecule keywords	BETA-SPECTRIN
total genus	36
structure length	108
sequence length	108
ec nomenclature
pdb deposition date	1997-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00307	CH	Calponin homology (CH) domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Calponin-like domain	1aa2A00

1H67A 3HORA 4EDLA 1TJTA 2D86A 2VZDA 2WA7A 1BKRA 2VZGB 4B7LA 2YRNA 2R0OA 2E9KA 2VZCA 1UJOA 1WYLA 2WFNA 3F7PA 1AA2A 2D87A 3I6XA 1SH5A 2VZIB 2DK9A 4TXIA 2D89A 1QAGA 2EE7A 1P5SA 1V5KA 2WA6A 5L0OA 3KMWB 4Q58A 3JALM 1UEGA 3KMUB 3REPB 2D88A 1SH6A 1RT8A 3JAKM 1P2XA 4Q57B 1PA7A 1MB8A 2QJXA 1AOAA 3JARM 1DXXA 5J8EA 3HOCA 2EYIA 1WYMA 1WYRA 1WYQA 2K3SA 2L3GA 1PXYA 5A4BA 4TXKA 5A36A 1WYPA 2D85A 4EDMA 1WYOA 4Q59A 5A38A 2R8UA 3KY9A 3CO1A 4EDNA 1VKAA 1WKUA 1WJOA 2WA5A 2EYNA 5A37A 5BVRA 1BHDA 3FERA 2RR8A 2QJZA 2JV9A 2K2RA 3HOPA 1WIXA 1WYNA
chains in the Genus database with same CATH superfamily

1H67A 3HORA 2WDTA 4EDLA 1TJTA 2D86A 2VZDA 2WA7A 1BKRA 2VZGB 2WE6A 4B7LA 2YRNA 2R0OA 2E9KA 2VZCA 1UJOA 1WYLA 2IGPA 2WFNA 3VP7A 3F7PA 1AA2A 2VE7A 2D87A 2VE7C 3I6XA 2HKPA 1SH5A 2VZIB 2DK9A 2HL9A 4LVPA 4TXIA 2D89A 1QAGA 2EE7A 1P5SA 1V5KA 2WA6A 5L0OA 3KMWB 4Q58A 3JALM 1UEGA 4LVRA 3KMUB 3REPB 2D88A 1SH6A 1RT8A 3JAKM 1P2XA 4Q57B 1PA7A 1MB8A 2EQOA 2QJXA 1AOAA 3EAYA 3JARM 1DXXA 1EUVA 5FMTA 5J8EA 3HOCA 2EYIA 1WYMA 1WYRA 1WYQA 2K3SA 2L3GA 1PXYA 5A4BA 4TXKA 5FMUA 5A36A 1WYPA 2D85A 4EDMA 4DDPA 1WYOA 4Q59A 5A38A 2R8UA 3KY9A 3CO1A 4EDNA 1VKAA 1WKUA 1WJOA 2WA5A 2EYNA 5A37A 5BVRA 2HL8A 1BHDA 3FERA 2RR8A 2QJZA 2JV9A 2K2RA 3HOPA 1WIXA 1WYNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1H67 A;  3HOR A;  4EDL A;  1TJT A;  2D86 A;  2VZD A;  2WA7 A;  1BKR A;  2VZG B;  4B7L A;  2YRN A;  2R0O A;  2E9K A;  2VZC A;  1UJO A;  1WYL A;  2WFN A;  3F7P A;  1AA2 A;  2D87 A;  3I6X A;  1SH5 A;  2VZI B;  2DK9 A;  4TXI A;  2D89 A;  1QAG A;  2EE7 A;  1P5S A;  1V5K A;  2WA6 A;  5L0O A;  3KMW B;  4Q58 A;  3JAL M;  1UEG A;  3KMU B;  3REP B;  2D88 A;  1SH6 A;  1RT8 A;  3JAK M;  1P2X A;  4Q57 B;  1PA7 A;  1MB8 A;  2QJX A;  1AOA A;  3JAR M;  1DXX A;  5J8E A;  3HOC A;  2EYI A;  1WYM A;  1WYR A;  1WYQ A;  2K3S A;  2L3G A;  1PXY A;  5A4B A;  4TXK A;  5A36 A;  1WYP A;  2D85 A;  4EDM A;  1WYO A;  4Q59 A;  5A38 A;  2R8U A;  3KY9 A;  3CO1 A;  4EDN A;  1VKA A;  1WKU A;  1WJO A;  2WA5 A;  2EYN A;  5A37 A;  5BVR A;  1BHD A;  3FER A;  2RR8 A;  2QJZ A;  2JV9 A;  2K2R A;  3HOP A;  1WIX A;  1WYN A; 
#chains in the Genus database with same CATH topology
 1H67 A;  3HOR A;  2WDT A;  4EDL A;  1TJT A;  2D86 A;  2VZD A;  2WA7 A;  1BKR A;  2VZG B;  2WE6 A;  4B7L A;  2YRN A;  2R0O A;  2E9K A;  2VZC A;  1UJO A;  1WYL A;  2IGP A;  2WFN A;  3VP7 A;  3F7P A;  1AA2 A;  2VE7 A;  2D87 A;  2VE7 C;  3I6X A;  2HKP A;  1SH5 A;  2VZI B;  2DK9 A;  2HL9 A;  4LVP A;  4TXI A;  2D89 A;  1QAG A;  2EE7 A;  1P5S A;  1V5K A;  2WA6 A;  5L0O A;  3KMW B;  4Q58 A;  3JAL M;  1UEG A;  4LVR A;  3KMU B;  3REP B;  2D88 A;  1SH6 A;  1RT8 A;  3JAK M;  1P2X A;  4Q57 B;  1PA7 A;  1MB8 A;  2EQO A;  2QJX A;  1AOA A;  3EAY A;  3JAR M;  1DXX A;  1EUV A;  5FMT A;  5J8E A;  3HOC A;  2EYI A;  1WYM A;  1WYR A;  1WYQ A;  2K3S A;  2L3G A;  1PXY A;  5A4B A;  4TXK A;  5FMU A;  5A36 A;  1WYP A;  2D85 A;  4EDM A;  4DDP A;  1WYO A;  4Q59 A;  5A38 A;  2R8U A;  3KY9 A;  3CO1 A;  4EDN A;  1VKA A;  1WKU A;  1WJO A;  2WA5 A;  2EYN A;  5A37 A;  5BVR A;  2HL8 A;  1BHD A;  3FER A;  2RR8 A;  2QJZ A;  2JV9 A;  2K2R A;  3HOP A;  1WIX A;  1WYN A; 
#chains in the Genus database with same CATH homology
 1H67 A;  3HOR A;  4EDL A;  1TJT A;  2D86 A;  2VZD A;  2WA7 A;  1BKR A;  2VZG B;  4B7L A;  2YRN A;  2R0O A;  2E9K A;  2VZC A;  1UJO A;  1WYL A;  2WFN A;  3F7P A;  1AA2 A;  2D87 A;  3I6X A;  1SH5 A;  2VZI B;  2DK9 A;  4TXI A;  2D89 A;  1QAG A;  2EE7 A;  1P5S A;  1V5K A;  2WA6 A;  5L0O A;  3KMW B;  4Q58 A;  3JAL M;  1UEG A;  3KMU B;  3REP B;  2D88 A;  1SH6 A;  1RT8 A;  3JAK M;  1P2X A;  4Q57 B;  1PA7 A;  1MB8 A;  2QJX A;  1AOA A;  3JAR M;  1DXX A;  5J8E A;  3HOC A;  2EYI A;  1WYM A;  1WYR A;  1WYQ A;  2K3S A;  2L3G A;  1PXY A;  5A4B A;  4TXK A;  5A36 A;  1WYP A;  2D85 A;  4EDM A;  1WYO A;  4Q59 A;  5A38 A;  2R8U A;  3KY9 A;  3CO1 A;  4EDN A;  1VKA A;  1WKU A;  1WJO A;  2WA5 A;  2EYN A;  5A37 A;  5BVR A;  1BHD A;  3FER A;  2RR8 A;  2QJZ A;  2JV9 A;  2K2R A;  3HOP A;  1WIX A;  1WYN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AA2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations