3EAYA

Crystal structure of the human senp7 catalytic domain
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
304
structure length
247
Chain Sequence
LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Sentrin-specific protease 7
publication title Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 71
structure length 247
sequence length 304
ec nomenclature ec 3.4.22.-:
pdb deposition date 2008-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.20 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 3eayA01
3.30.310.130 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Ubiquitin-related 3eayA02
1EUVA 2HL8A 2HKPA 3EAYA 2HL9A
chains in the Genus database with same CATH superfamily
3F10A 5BMPA 1XSZA 1CDWA 3JAKM 2OOYA 1BHDA 3OSEA 1AISA 2JV9A 3CWUA 2EYNA 2F7LA 1T6AA 4HJHA 5JMVD 1C9BB 2LAEA 3DPUA 4DULA 1TJTA 1VTLE 3I6XA 2V9JA 1WYPA 2EE7A 5JN5A 2Y8QA 1YQKA 1NVPA 2PWWA 3SNSA 2WFNA 3C04A 2VE7C 2IV8A 4PY5A 5FMUA 2HZSA 1K35A 3KY9A 2QLVA 3ULXA 2R0OA 1KYUA 3EIKA 3HS8A 2ZFDB 4CFFA 1WIXA 1AA2A 3DPTA 1QNAA 1KYDA 2FKMX 1D3UA 1P5GX 1M3QA 2IGPA 2QJZA 5HSHA 1WQAA 4WX8A 1QTPA 5IYBP 2NOEA 1UT7A 2FUVA 5IYCP 1UT4A 3KMUB 4DDPA 3TE5A 1MPGA 3OGDA 2JHNA 2RR8A 3NA5A 1QN4A 2D89A 5A37A 2DKDA 3HOCA 2NOIA 1UJOA 2VJ0A 1VKLA 4EDLA 1QN6A 4LVPA 3ENOC 1YQRA 1QN7A 1TBAB 3I3WA 4WZSD 1LWWA 4D7QA 3H1ZA 3PDKA 2DK9A 1WYLA 1NH2A 1LWYA 4EALA 4EAIA 3CO1A 1VOKA 2WDTA 4Q11A 1PXYA 1RT8A 3UW2A 4C7PA 2WA6A 1WKUA 1QN3A 2QREA 4WXAA 3D4VA 1TGHA 1AOAA 3N89A 2H5AX 4ROCB 1QTSA 4EDNA 3RPJA 3KTUA 1DIZA 1YQLA 1VOLB 3JALM 1WYOA 3OSMA 2VZCA 1WYRA 3F7PA 1KFIA 3CWSA 1VTOA 1HU0A 2NWVA 2HL9A 1LXTA 5F9CA 3CWAA 4Q59A 1KY7A 2VZDA 4Q58A 2D85A 2D0BA 1YTBA 5BVRA 1DXXA 5A4BA 2JOIA 2NOZA 5AN4A 3OH6A 1M3HA 5A38A 5BMNA 3OLPA 3HORA 1QN8A 1TUOA 4TPSA 2FKFA 2D88A 3PMGA 3KMWB 2Y8LA 3I0XA 1TBPA 5J8EA 2EYIA 1B9KA 1WYNA 2V92A 1YQMA 2I5WA 1MP9A 4TXKA 1N39A 1RM1A 1QNBA 2QJXA 1UEGA 3FERA 1QNEA 3BKQX 1KO9A 1PA7A 1MB8A 1P2XA 1N3CA 2WE6A 3VP7A 4EDMA 1V5SA 2JHJA 5FMTA 2FGTA 1C4GA 2H4LX 1LWVA 3CVTA 2NVMA 1V5KA 1JFIC 1BKRA 4B7LA 2K2RA 2EQOA 1UL7A 2HZMA 2YA3A 3ENCA 4I8OA 4EAKA 4BJUA 1QN5A 2D87A 1KFQA 2YH5A 1Q9UA 3OC3C 5IYDP 4EAGA 2Z0FA 1E42A 3VN5A 2E9KA 3OCIA 4EJYA 1PZDA 3I0WA 1WJWA 4B0AA 3OH9A 1PCZA 2K3SA 1H67A 1P5DX 1KYFA 3IH7A 1FN7A 1PCJX 2MJ7A 3RSMA 1WYQA 2VZGB 2MZ8A 3CWTA 1C47A 2JPIA 3JARM 3HS9A 3CW7A 4EJZA 3ASMA 4D7RA 1M5Q1 2DKAA 2NOBA 3KRMA 5EPCA 4Q57B 2DKCA 3REPB 2D0AA 4EAJA 1EUVA 1YTFA 2HL8A 2WA7A 1R4XA 1EBMA 1P5SA 1K2YX 4MRQA 2R5XA 4ROEB 2WA5A 3OSTA 2VE7A 2R8UA 1QAGA 2G30A 2Z8UA 2OOXA 3D7QA 1W80A 4IL8A 4QG5A 1SH5A 1N3AA 1QNCA 2XHIA 4TXIA 3T4NA 3CVSA 2QRCA 2EHBD 2D0CA 2HKPA 3TDHA 1KY6A 1QN9A 3F0ZA 1J3MA 1PCMX 3HOPA 1SH6A 2D86A 2YRNA 2V8QA 2NLVA 2QR1A 2QRDA 2NOHA 3EAYA 2VZIB 4LVRA 1VKAA 5L0OA 1WYMA 2L3GA 1WJOA 5A36A 2NOFA 2O3OA 5KL0A 4RODB 1PVSA 1JDYA 2IV9A 2NOLA 1NGMA
chains in the Genus database with same CATH topology
2EQOA 2IGPA 2VE7A 2WE6A 3VP7A 1EUVA 2WDTA 2VE7C 2HL8A 2HKPA 3EAYA 4LVRA 4LVPA 4DDPA 2HL9A 5FMUA 5FMTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EUV A;  2HL8 A;  2HKP A;  3EAY A;  2HL9 A; 
#chains in the Genus database with same CATH topology
 3F10 A;  5BMP A;  1XSZ A;  1CDW A;  3JAK M;  2OOY A;  1BHD A;  3OSE A;  1AIS A;  2JV9 A;  3CWU A;  2EYN A;  2F7L A;  1T6A A;  4HJH A;  5JMV D;  1C9B B;  2LAE A;  3DPU A;  4DUL A;  1TJT A;  1VTL E;  3I6X A;  2V9J A;  1WYP A;  2EE7 A;  5JN5 A;  2Y8Q A;  1YQK A;  1NVP A;  2PWW A;  3SNS A;  2WFN A;  3C04 A;  2VE7 C;  2IV8 A;  4PY5 A;  5FMU A;  2HZS A;  1K35 A;  3KY9 A;  2QLV A;  3ULX A;  2R0O A;  1KYU A;  3EIK A;  3HS8 A;  2ZFD B;  4CFF A;  1WIX A;  1AA2 A;  3DPT A;  1QNA A;  1KYD A;  2FKM X;  1D3U A;  1P5G X;  1M3Q A;  2IGP A;  2QJZ A;  5HSH A;  1WQA A;  4WX8 A;  1QTP A;  5IYB P;  2NOE A;  1UT7 A;  2FUV A;  5IYC P;  1UT4 A;  3KMU B;  4DDP A;  3TE5 A;  1MPG A;  3OGD A;  2JHN A;  2RR8 A;  3NA5 A;  1QN4 A;  2D89 A;  5A37 A;  2DKD A;  3HOC A;  2NOI A;  1UJO A;  2VJ0 A;  1VKL A;  4EDL A;  1QN6 A;  4LVP A;  3ENO C;  1YQR A;  1QN7 A;  1TBA B;  3I3W A;  4WZS D;  1LWW A;  4D7Q A;  3H1Z A;  3PDK A;  2DK9 A;  1WYL A;  1NH2 A;  1LWY A;  4EAL A;  4EAI A;  3CO1 A;  1VOK A;  2WDT A;  4Q11 A;  1PXY A;  1RT8 A;  3UW2 A;  4C7P A;  2WA6 A;  1WKU A;  1QN3 A;  2QRE A;  4WXA A;  3D4V A;  1TGH A;  1AOA A;  3N89 A;  2H5A X;  4ROC B;  1QTS A;  4EDN A;  3RPJ A;  3KTU A;  1DIZ A;  1YQL A;  1VOL B;  3JAL M;  1WYO A;  3OSM A;  2VZC A;  1WYR A;  3F7P A;  1KFI A;  3CWS A;  1VTO A;  1HU0 A;  2NWV A;  2HL9 A;  1LXT A;  5F9C A;  3CWA A;  4Q59 A;  1KY7 A;  2VZD A;  4Q58 A;  2D85 A;  2D0B A;  1YTB A;  5BVR A;  1DXX A;  5A4B A;  2JOI A;  2NOZ A;  5AN4 A;  3OH6 A;  1M3H A;  5A38 A;  5BMN A;  3OLP A;  3HOR A;  1QN8 A;  1TUO A;  4TPS A;  2FKF A;  2D88 A;  3PMG A;  3KMW B;  2Y8L A;  3I0X A;  1TBP A;  5J8E A;  2EYI A;  1B9K A;  1WYN A;  2V92 A;  1YQM A;  2I5W A;  1MP9 A;  4TXK A;  1N39 A;  1RM1 A;  1QNB A;  2QJX A;  1UEG A;  3FER A;  1QNE A;  3BKQ X;  1KO9 A;  1PA7 A;  1MB8 A;  1P2X A;  1N3C A;  2WE6 A;  3VP7 A;  4EDM A;  1V5S A;  2JHJ A;  5FMT A;  2FGT A;  1C4G A;  2H4L X;  1LWV A;  3CVT A;  2NVM A;  1V5K A;  1JFI C;  1BKR A;  4B7L A;  2K2R A;  2EQO A;  1UL7 A;  2HZM A;  2YA3 A;  3ENC A;  4I8O A;  4EAK A;  4BJU A;  1QN5 A;  2D87 A;  1KFQ A;  2YH5 A;  1Q9U A;  3OC3 C;  5IYD P;  4EAG A;  2Z0F A;  1E42 A;  3VN5 A;  2E9K A;  3OCI A;  4EJY A;  1PZD A;  3I0W A;  1WJW A;  4B0A A;  3OH9 A;  1PCZ A;  2K3S A;  1H67 A;  1P5D X;  1KYF A;  3IH7 A;  1FN7 A;  1PCJ X;  2MJ7 A;  3RSM A;  1WYQ A;  2VZG B;  2MZ8 A;  3CWT A;  1C47 A;  2JPI A;  3JAR M;  3HS9 A;  3CW7 A;  4EJZ A;  3ASM A;  4D7R A;  1M5Q 1;  2DKA A;  2NOB A;  3KRM A;  5EPC A;  4Q57 B;  2DKC A;  3REP B;  2D0A A;  4EAJ A;  1EUV A;  1YTF A;  2HL8 A;  2WA7 A;  1R4X A;  1EBM A;  1P5S A;  1K2Y X;  4MRQ A;  2R5X A;  4ROE B;  2WA5 A;  3OST A;  2VE7 A;  2R8U A;  1QAG A;  2G30 A;  2Z8U A;  2OOX A;  3D7Q A;  1W80 A;  4IL8 A;  4QG5 A;  1SH5 A;  1N3A A;  1QNC A;  2XHI A;  4TXI A;  3T4N A;  3CVS A;  2QRC A;  2EHB D;  2D0C A;  2HKP A;  3TDH A;  1KY6 A;  1QN9 A;  3F0Z A;  1J3M A;  1PCM X;  3HOP A;  1SH6 A;  2D86 A;  2YRN A;  2V8Q A;  2NLV A;  2QR1 A;  2QRD A;  2NOH A;  3EAY A;  2VZI B;  4LVR A;  1VKA A;  5L0O A;  1WYM A;  2L3G A;  1WJO A;  5A36 A;  2NOF A;  2O3O A;  5KL0 A;  4ROD B;  1PVS A;  1JDY A;  2IV9 A;  2NOL A;  1NGM A; 
#chains in the Genus database with same CATH homology
 2EQO A;  2IGP A;  2VE7 A;  2WE6 A;  3VP7 A;  1EUV A;  2WDT A;  2VE7 C;  2HL8 A;  2HKP A;  3EAY A;  4LVR A;  4LVP A;  4DDP A;  2HL9 A;  5FMU A;  5FMT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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