3EAYA

Crystal structure of the human senp7 catalytic domain
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
304
structure length
247
Chain Sequence
LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKLHLQQQKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Sentrin-specific protease 7
publication title Structure of the Human SENP7 Catalytic Domain and Poly-SUMO Deconjugation Activities for SENP6 and SENP7.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Hydrolase
total genus 71
structure length 247
sequence length 304
ec nomenclature ec 3.4.22.-:
pdb deposition date 2008-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.20 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 3eayA01
3.30.310.130 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Ubiquitin-related 3eayA02
2HL9A 2HL8A 3EAYA 2HKPA 1EUVA
chains in the Genus database with same CATH superfamily
2WFNA 1KFIA 1VKAA 5A38A 2QR1A 2HL9A 2HL8A 2DKDA 2QRCA 1QNAA 2VZIB 3I3WA 4ROCB 1RT8A 4D7QA 2V9JA 2FKFA 2PWWA 1LWYA 1LXTA 1VOKA 1D3UA 2JOIA 2EE7A 4EAGA 2JV9A 1TGHA 2JHJA 2NOLA 2WDTA 1SH6A 5A36A 2FUVA 3OGDA 1UJOA 2NOIA 3HOCA 1AOAA 3HOPA 2R0OA 2XHIA 1QN5A 3ASMA 3REPB 4C7PA 2D0AA 3VP7A 2G30A 2V92A 5IYCP 2EYNA 2FKMX 3D4VA 2JPIA 1V5SA 2Y8LA 3OSEA 3KRMA 3CVTA 3TE5A 1NH2A 3JAKM 2D87A 3I0XA 2D86A 1P5GX 1HU0A 3I0WA 2NVMA 1M3QA 5FMUA 1PCJX 1SH5A 1Q9UA 2QJZA 2ZFDB 4CFFA 1WYPA 4EDNA 3UW2A 2VZCA 2VZDA 1KYUA 2HKPA 1EUVA 4B0AA 3TDHA 1DXXA 3C04A 2K2RA 2K3SA 5JN5A 4TXKA 1PCMX 3CVSA 2R5XA 3D7QA 4EJZA 5A4BA 3H1ZA 4IL8A 3KY9A 3EIKA 1YTBA 2Z8UA 1WYNA 1N3CA 1QN6A 2NOBA 4EDLA 1N3AA 1WIXA 5JMVD 1V5KA 2VJ0A 1KFQA 1VOLB 4PY5A 4QG5A 1TBAB 3T4NA 4BJUA 4EJYA 1QNEA 1AA2A 4DULA 2E9KA 2DK9A 2LAEA 4WXAA 2VE7A 2DKCA 1YQMA 2QREA 4EAKA 1BHDA 3F0ZA 2FGTA 1JDYA 1KY6A 3BKQX 3CWUA 4B7LA 3KTUA 1C9BB 3HS9A 1WYLA 5IYBP 5F9CA 3JARM 1CDWA 2JHNA 3CW7A 1MB8A 2NOZA 3PMGA 3OH9A 1QN7A 3HS8A 1UEGA 2VZGB 1WYOA 1PZDA 4ROEB 1QN9A 2D88A 3NA5A 2F7LA 2WA6A 2OOYA 2IV8A 5EPCA 1VTOA 2VE7C 2I5WA 3CWTA 4Q57B 4TPSA 1QN8A 1KY7A 3KMWB 3OCIA 2WA5A 1TBPA 1NGMA 3CWAA 4TXIA 4I8OA 1LWWA 4Q59A 3OSTA 3RPJA 4EAJA 1E42A 2L3GA 5HSHA 2D89A 2HZMA 2YRNA 1H67A 3CO1A 2D0BA 2D0CA 1AISA 3DPUA 2HZSA 5IYDP 2WA7A 1YQRA 3HORA 2H5AX 1WYMA 3DPTA 3I6XA 1KYFA 1P2XA 1YQLA 2YH5A 2V8QA 2NLVA 3PDKA 1WYRA 1WYQA 2QLVA 2WE6A 2NWVA 1QTSA 1QN4A 4EAIA 1P5SA 1TJTA 2R8UA 1N39A 2QJXA 4EDMA 1M5Q1 1JFIC 5AN4A 3EAYA 1B9KA 5A37A 5KL0A 4RODB 1UT7A 5BVRA 1EBMA 4EALA 1J3MA 5BMPA 2MJ7A 5L0OA 4LVRA 1KO9A 1XSZA 1MPGA 2YA3A 4HJHA 5FMTA 2NOHA 1QAGA 1C4GA 3VN5A 1K35A 4Q11A 2Z0FA 3OC3C 1QNBA 3RSMA 1WJOA 1YTFA 3ENCA 1PXYA 5BMNA 1YQKA 2OOXA 2Y8QA 1PVSA 1KYDA 1WQAA 3IH7A 1WKUA 3KMUB 1WJWA 1UT4A 1FN7A 1PCZA 1M3HA 3CWSA 5J8EA 1QTPA 3JALM 1BKRA 2H4LX 3OSMA 2EQOA 2EHBD 1NVPA 1T6AA 1TUOA 2O3OA 3OH6A 4Q58A 3FERA 1VTLE 1W80A 1MP9A 2IV9A 4MRQA 4WZSD 4WX8A 2NOEA 1VKLA 2NOFA 1RM1A 1DIZA 3ENOC 2EYIA 1P5DX 2IGPA 1QNCA 4D7RA 3F10A 3OLPA 4LVPA 1C47A 1QN3A 3F7PA 1LWVA 2QRDA 1K2YX 4DDPA 3N89A 2DKAA 3ULXA 2RR8A 1UL7A 1R4XA 3SNSA 2D85A 1PA7A 2MZ8A
chains in the Genus database with same CATH topology
2VE7C 2HL9A 2EQOA 4DDPA 5FMTA 2HL8A 5FMUA 3EAYA 2WE6A 2IGPA 2WDTA 4LVRA 2HKPA 4LVPA 3VP7A 2VE7A 1EUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HL9 A;  2HL8 A;  3EAY A;  2HKP A;  1EUV A; 
#chains in the Genus database with same CATH topology
 2WFN A;  1KFI A;  1VKA A;  5A38 A;  2QR1 A;  2HL9 A;  2HL8 A;  2DKD A;  2QRC A;  1QNA A;  2VZI B;  3I3W A;  4ROC B;  1RT8 A;  4D7Q A;  2V9J A;  2FKF A;  2PWW A;  1LWY A;  1LXT A;  1VOK A;  1D3U A;  2JOI A;  2EE7 A;  4EAG A;  2JV9 A;  1TGH A;  2JHJ A;  2NOL A;  2WDT A;  1SH6 A;  5A36 A;  2FUV A;  3OGD A;  1UJO A;  2NOI A;  3HOC A;  1AOA A;  3HOP A;  2R0O A;  2XHI A;  1QN5 A;  3ASM A;  3REP B;  4C7P A;  2D0A A;  3VP7 A;  2G30 A;  2V92 A;  5IYC P;  2EYN A;  2FKM X;  3D4V A;  2JPI A;  1V5S A;  2Y8L A;  3OSE A;  3KRM A;  3CVT A;  3TE5 A;  1NH2 A;  3JAK M;  2D87 A;  3I0X A;  2D86 A;  1P5G X;  1HU0 A;  3I0W A;  2NVM A;  1M3Q A;  5FMU A;  1PCJ X;  1SH5 A;  1Q9U A;  2QJZ A;  2ZFD B;  4CFF A;  1WYP A;  4EDN A;  3UW2 A;  2VZC A;  2VZD A;  1KYU A;  2HKP A;  1EUV A;  4B0A A;  3TDH A;  1DXX A;  3C04 A;  2K2R A;  2K3S A;  5JN5 A;  4TXK A;  1PCM X;  3CVS A;  2R5X A;  3D7Q A;  4EJZ A;  5A4B A;  3H1Z A;  4IL8 A;  3KY9 A;  3EIK A;  1YTB A;  2Z8U A;  1WYN A;  1N3C A;  1QN6 A;  2NOB A;  4EDL A;  1N3A A;  1WIX A;  5JMV D;  1V5K A;  2VJ0 A;  1KFQ A;  1VOL B;  4PY5 A;  4QG5 A;  1TBA B;  3T4N A;  4BJU A;  4EJY A;  1QNE A;  1AA2 A;  4DUL A;  2E9K A;  2DK9 A;  2LAE A;  4WXA A;  2VE7 A;  2DKC A;  1YQM A;  2QRE A;  4EAK A;  1BHD A;  3F0Z A;  2FGT A;  1JDY A;  1KY6 A;  3BKQ X;  3CWU A;  4B7L A;  3KTU A;  1C9B B;  3HS9 A;  1WYL A;  5IYB P;  5F9C A;  3JAR M;  1CDW A;  2JHN A;  3CW7 A;  1MB8 A;  2NOZ A;  3PMG A;  3OH9 A;  1QN7 A;  3HS8 A;  1UEG A;  2VZG B;  1WYO A;  1PZD A;  4ROE B;  1QN9 A;  2D88 A;  3NA5 A;  2F7L A;  2WA6 A;  2OOY A;  2IV8 A;  5EPC A;  1VTO A;  2VE7 C;  2I5W A;  3CWT A;  4Q57 B;  4TPS A;  1QN8 A;  1KY7 A;  3KMW B;  3OCI A;  2WA5 A;  1TBP A;  1NGM A;  3CWA A;  4TXI A;  4I8O A;  1LWW A;  4Q59 A;  3OST A;  3RPJ A;  4EAJ A;  1E42 A;  2L3G A;  5HSH A;  2D89 A;  2HZM A;  2YRN A;  1H67 A;  3CO1 A;  2D0B A;  2D0C A;  1AIS A;  3DPU A;  2HZS A;  5IYD P;  2WA7 A;  1YQR A;  3HOR A;  2H5A X;  1WYM A;  3DPT A;  3I6X A;  1KYF A;  1P2X A;  1YQL A;  2YH5 A;  2V8Q A;  2NLV A;  3PDK A;  1WYR A;  1WYQ A;  2QLV A;  2WE6 A;  2NWV A;  1QTS A;  1QN4 A;  4EAI A;  1P5S A;  1TJT A;  2R8U A;  1N39 A;  2QJX A;  4EDM A;  1M5Q 1;  1JFI C;  5AN4 A;  3EAY A;  1B9K A;  5A37 A;  5KL0 A;  4ROD B;  1UT7 A;  5BVR A;  1EBM A;  4EAL A;  1J3M A;  5BMP A;  2MJ7 A;  5L0O A;  4LVR A;  1KO9 A;  1XSZ A;  1MPG A;  2YA3 A;  4HJH A;  5FMT A;  2NOH A;  1QAG A;  1C4G A;  3VN5 A;  1K35 A;  4Q11 A;  2Z0F A;  3OC3 C;  1QNB A;  3RSM A;  1WJO A;  1YTF A;  3ENC A;  1PXY A;  5BMN A;  1YQK A;  2OOX A;  2Y8Q A;  1PVS A;  1KYD A;  1WQA A;  3IH7 A;  1WKU A;  3KMU B;  1WJW A;  1UT4 A;  1FN7 A;  1PCZ A;  1M3H A;  3CWS A;  5J8E A;  1QTP A;  3JAL M;  1BKR A;  2H4L X;  3OSM A;  2EQO A;  2EHB D;  1NVP A;  1T6A A;  1TUO A;  2O3O A;  3OH6 A;  4Q58 A;  3FER A;  1VTL E;  1W80 A;  1MP9 A;  2IV9 A;  4MRQ A;  4WZS D;  4WX8 A;  2NOE A;  1VKL A;  2NOF A;  1RM1 A;  1DIZ A;  3ENO C;  2EYI A;  1P5D X;  2IGP A;  1QNC A;  4D7R A;  3F10 A;  3OLP A;  4LVP A;  1C47 A;  1QN3 A;  3F7P A;  1LWV A;  2QRD A;  1K2Y X;  4DDP A;  3N89 A;  2DKA A;  3ULX A;  2RR8 A;  1UL7 A;  1R4X A;  3SNS A;  2D85 A;  1PA7 A;  2MZ8 A; 
#chains in the Genus database with same CATH homology
 2VE7 C;  2HL9 A;  2EQO A;  4DDP A;  5FMT A;  2HL8 A;  5FMU A;  3EAY A;  2WE6 A;  2IGP A;  2WDT A;  4LVR A;  2HKP A;  4LVP A;  3VP7 A;  2VE7 A;  1EUV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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