The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
62
|
sequence length |
312
|
structure length |
246
|
Chain Sequence |
MIKDPRPLNDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLIDCIKIHTAMKESSGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRFTNINPESPFRKAFTAT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Implications for Kinetochore-Microtubule Attachment from the Structure of an Engineered Ndc80 Complex
pubmed doi rcsb |
| molecule tags |
Cell cycle
|
| source organism |
Homo sapiens
|
| molecule keywords |
KINETOCHORE PROTEIN HEC1, KINETOCHORE PROTEIN SPC25
|
| total genus |
62
|
| structure length |
246
|
| sequence length |
312
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2007-10-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF18077 | DUF5595 | Domain of unknown function (DUF5595) |
| A | PF08234 | Spindle_Spc25 | Chromosome segregation protein Spc25 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Actin-binding Protein, T-fimbrin; domain 1 | Actin-binding Protein, T-fimbrin; domain 1 |
#chains in the Genus database with same CATH superfamily 2VE7 A; 2IGP A; #chains in the Genus database with same CATH topology 1WKU A; 4Q59 A; 4DDP A; 3KMU B; 2IGP A; 2E9K A; 4TXI A; 1WYL A; 4TXK A; 3VP7 A; 1H67 A; 5A4B A; 1PXY A; 1WYQ A; 1UJO A; 4LVR A; 2VE7 A; 3KY9 A; 2VZI B; 5A38 A; 2WA7 A; 2WDT A; 3FER A; 3HOC A; 1WIX A; 2K2R A; 2VZC A; 4LVP A; 2QJZ A; 1VKA A; 1P2X A; 2D88 A; 5A36 A; 2VZG B; 1PA7 A; 1WYR A; 1V5K A; 3JAL M; 3HOP A; 3JAK M; 1WYN A; 2D85 A; 5FMU A; 2EYI A; 2QJX A; 3EAY A; 1TJT A; 2D86 A; 2VE7 C; 2HKP A; 1QAG A; 5BVR A; 3HOR A; 2WFN A; 5L0O A; 2EE7 A; 1EUV A; 1WJO A; 2WE6 A; 1RT8 A; 3KMW B; 2JV9 A; 1AA2 A; 4Q58 A; 2DK9 A; 2R8U A; 1WYM A; 2WA6 A; 2R0O A; 2YRN A; 2EYN A; 4Q57 B; 1SH5 A; 1BHD A; 2D89 A; 3REP B; 2EQO A; 2VZD A; 3CO1 A; 5J8E A; 4EDM A; 4EDN A; 2K3S A; 1DXX A; 1AOA A; 1SH6 A; 1BKR A; 3JAR M; 4EDL A; 2RR8 A; 2L3G A; 1WYP A; 1UEG A; 1MB8 A; 3F7P A; 5A37 A; 5FMT A; 4B7L A; 2HL8 A; 1P5S A; 3I6X A; 2HL9 A; 2D87 A; 2WA5 A; 1WYO A; #chains in the Genus database with same CATH homology 5FMT A; 4LVP A; 3VP7 A; 2IGP A; 2VE7 C; 2WDT A; 2HL8 A; 2HKP A; 1EUV A; 4LVR A; 2VE7 A; 4DDP A; 2HL9 A; 2WE6 A; 3EAY A; 2EQO A; 5FMU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
