3REPB

Crystal structure of the ilk/alpha-parvin core complex (mnatp)
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
124
structure length
124
Chain Sequence
AFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVLYNLFTKYRNVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the ILK/alpha-parvin core complex (MnATP)
rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords Integrin-linked kinase
total genus 40
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2011-04-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 3repB00
1H67A 3KMWB 1WYNA 2K2RA 5A36A 1MB8A 2VZCA 1WYQA 2WA6A 2WA7A 4B7LA 3I6XA 2R0OA 3KMUB 4Q57B 5BVRA 1DXXA 1V5KA 5J8EA 5A37A 2QJXA 2D89A 4TXKA 4EDLA 3CO1A 2L3GA 2D86A 1SH6A 4Q58A 1BHDA 1UJOA 2R8UA 2K3SA 1WYOA 2EYNA 3F7PA 1WYLA 2E9KA 4Q59A 1BKRA 2YRNA 2JV9A 2D87A 1PXYA 1WYRA 3HOCA 2VZDA 2VZIB 1RT8A 4TXIA 1AOAA 3KY9A 1WIXA 2RR8A 2WA5A 1TJTA 2WFNA 4EDNA 1VKAA 3HORA 5A4BA 5A38A 3JALM 2DK9A 1WKUA 2D88A 3JAKM 2VZGB 1QAGA 1P5SA 5L0OA 1PA7A 1WYMA 3JARM 4EDMA 2QJZA 2D85A 1P2XA 3REPB 2EE7A 3HOPA 1SH5A 1WJOA 3FERA 2EYIA 1UEGA 1WYPA 1AA2A
chains in the Genus database with same CATH superfamily
1H67A 3KMWB 1WYNA 2K2RA 5A36A 1MB8A 2VZCA 3VP7A 2HL9A 1WYQA 2WE6A 5FMTA 2WA6A 2WA7A 4B7LA 3I6XA 2R0OA 3KMUB 4Q57B 5BVRA 1DXXA 1V5KA 5J8EA 5A37A 2QJXA 4LVRA 2D89A 4TXKA 4EDLA 3CO1A 2L3GA 2D86A 1SH6A 4Q58A 1BHDA 1UJOA 2R8UA 2K3SA 1WYOA 2EYNA 2IGPA 3F7PA 1WYLA 2E9KA 4Q59A 1BKRA 2YRNA 2WDTA 2JV9A 2D87A 2HKPA 3EAYA 1PXYA 1WYRA 3HOCA 2VZDA 2VZIB 1EUVA 1RT8A 4TXIA 1AOAA 3KY9A 1WIXA 2HL8A 4LVPA 2RR8A 2WA5A 1TJTA 2WFNA 2VE7A 4EDNA 1VKAA 3HORA 5FMUA 5A4BA 5A38A 3JALM 2DK9A 1WKUA 2D88A 3JAKM 2VZGB 1QAGA 1P5SA 2VE7C 5L0OA 2EQOA 1PA7A 1WYMA 3JARM 4EDMA 2QJZA 2D85A 1P2XA 3REPB 2EE7A 3HOPA 1SH5A 1WJOA 3FERA 4DDPA 2EYIA 1UEGA 1WYPA 1AA2A
chains in the Genus database with same CATH topology
1H67A 3KMWB 1WYNA 2K2RA 5A36A 1MB8A 2VZCA 1WYQA 2WA6A 2WA7A 4B7LA 3I6XA 2R0OA 3KMUB 4Q57B 5BVRA 1DXXA 1V5KA 5J8EA 5A37A 2QJXA 2D89A 4TXKA 4EDLA 3CO1A 2L3GA 2D86A 1SH6A 4Q58A 1BHDA 1UJOA 2R8UA 2K3SA 1WYOA 2EYNA 3F7PA 1WYLA 2E9KA 4Q59A 1BKRA 2YRNA 2JV9A 2D87A 1PXYA 1WYRA 3HOCA 2VZDA 2VZIB 1RT8A 4TXIA 1AOAA 3KY9A 1WIXA 2RR8A 2WA5A 1TJTA 2WFNA 4EDNA 1VKAA 3HORA 5A4BA 5A38A 3JALM 2DK9A 1WKUA 2D88A 3JAKM 2VZGB 1QAGA 1P5SA 5L0OA 1PA7A 1WYMA 3JARM 4EDMA 2QJZA 2D85A 1P2XA 3REPB 2EE7A 3HOPA 1SH5A 1WJOA 3FERA 2EYIA 1UEGA 1WYPA 1AA2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H67 A;  3KMW B;  1WYN A;  2K2R A;  5A36 A;  1MB8 A;  2VZC A;  1WYQ A;  2WA6 A;  2WA7 A;  4B7L A;  3I6X A;  2R0O A;  3KMU B;  4Q57 B;  5BVR A;  1DXX A;  1V5K A;  5J8E A;  5A37 A;  2QJX A;  2D89 A;  4TXK A;  4EDL A;  3CO1 A;  2L3G A;  2D86 A;  1SH6 A;  4Q58 A;  1BHD A;  1UJO A;  2R8U A;  2K3S A;  1WYO A;  2EYN A;  3F7P A;  1WYL A;  2E9K A;  4Q59 A;  1BKR A;  2YRN A;  2JV9 A;  2D87 A;  1PXY A;  1WYR A;  3HOC A;  2VZD A;  2VZI B;  1RT8 A;  4TXI A;  1AOA A;  3KY9 A;  1WIX A;  2RR8 A;  2WA5 A;  1TJT A;  2WFN A;  4EDN A;  1VKA A;  3HOR A;  5A4B A;  5A38 A;  3JAL M;  2DK9 A;  1WKU A;  2D88 A;  3JAK M;  2VZG B;  1QAG A;  1P5S A;  5L0O A;  1PA7 A;  1WYM A;  3JAR M;  4EDM A;  2QJZ A;  2D85 A;  1P2X A;  3REP B;  2EE7 A;  3HOP A;  1SH5 A;  1WJO A;  3FER A;  2EYI A;  1UEG A;  1WYP A;  1AA2 A; 
#chains in the Genus database with same CATH topology
 1H67 A;  3KMW B;  1WYN A;  2K2R A;  5A36 A;  1MB8 A;  2VZC A;  3VP7 A;  2HL9 A;  1WYQ A;  2WE6 A;  5FMT A;  2WA6 A;  2WA7 A;  4B7L A;  3I6X A;  2R0O A;  3KMU B;  4Q57 B;  5BVR A;  1DXX A;  1V5K A;  5J8E A;  5A37 A;  2QJX A;  4LVR A;  2D89 A;  4TXK A;  4EDL A;  3CO1 A;  2L3G A;  2D86 A;  1SH6 A;  4Q58 A;  1BHD A;  1UJO A;  2R8U A;  2K3S A;  1WYO A;  2EYN A;  2IGP A;  3F7P A;  1WYL A;  2E9K A;  4Q59 A;  1BKR A;  2YRN A;  2WDT A;  2JV9 A;  2D87 A;  2HKP A;  3EAY A;  1PXY A;  1WYR A;  3HOC A;  2VZD A;  2VZI B;  1EUV A;  1RT8 A;  4TXI A;  1AOA A;  3KY9 A;  1WIX A;  2HL8 A;  4LVP A;  2RR8 A;  2WA5 A;  1TJT A;  2WFN A;  2VE7 A;  4EDN A;  1VKA A;  3HOR A;  5FMU A;  5A4B A;  5A38 A;  3JAL M;  2DK9 A;  1WKU A;  2D88 A;  3JAK M;  2VZG B;  1QAG A;  1P5S A;  2VE7 C;  5L0O A;  2EQO A;  1PA7 A;  1WYM A;  3JAR M;  4EDM A;  2QJZ A;  2D85 A;  1P2X A;  3REP B;  2EE7 A;  3HOP A;  1SH5 A;  1WJO A;  3FER A;  4DDP A;  2EYI A;  1UEG A;  1WYP A;  1AA2 A; 
#chains in the Genus database with same CATH homology
 1H67 A;  3KMW B;  1WYN A;  2K2R A;  5A36 A;  1MB8 A;  2VZC A;  1WYQ A;  2WA6 A;  2WA7 A;  4B7L A;  3I6X A;  2R0O A;  3KMU B;  4Q57 B;  5BVR A;  1DXX A;  1V5K A;  5J8E A;  5A37 A;  2QJX A;  2D89 A;  4TXK A;  4EDL A;  3CO1 A;  2L3G A;  2D86 A;  1SH6 A;  4Q58 A;  1BHD A;  1UJO A;  2R8U A;  2K3S A;  1WYO A;  2EYN A;  3F7P A;  1WYL A;  2E9K A;  4Q59 A;  1BKR A;  2YRN A;  2JV9 A;  2D87 A;  1PXY A;  1WYR A;  3HOC A;  2VZD A;  2VZI B;  1RT8 A;  4TXI A;  1AOA A;  3KY9 A;  1WIX A;  2RR8 A;  2WA5 A;  1TJT A;  2WFN A;  4EDN A;  1VKA A;  3HOR A;  5A4B A;  5A38 A;  3JAL M;  2DK9 A;  1WKU A;  2D88 A;  3JAK M;  2VZG B;  1QAG A;  1P5S A;  5L0O A;  1PA7 A;  1WYM A;  3JAR M;  4EDM A;  2QJZ A;  2D85 A;  1P2X A;  3REP B;  2EE7 A;  3HOP A;  1SH5 A;  1WJO A;  3FER A;  2EYI A;  1UEG A;  1WYP A;  1AA2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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