1H67A

Nmr structure of the ch domain of calponin
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
108
structure length
108
Chain Sequence
MPQTERQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure of the Calponin Ch Domain and Fitting to the 3D-Helical Reconstruction of F-Actin:Calponin.
pubmed doi rcsb
molecule tags Cytoskeleton
source organism Gallus gallus
molecule keywords CALPONIN ALPHA
total genus 28
structure length 108
sequence length 108
ec nomenclature
pdb deposition date 2001-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1h67A00
1SH6A 1QAGA 1V5KA 4Q58A 3JAKM 1WIXA 2D86A 1AA2A 1PXYA 1TJTA 5A37A 1WKUA 2D85A 1WYMA 2DK9A 3KMWB 1UJOA 4EDLA 4B7LA 2EE7A 1H67A 1PA7A 2WFNA 2JV9A 3JARM 3HOPA 1WYLA 3CO1A 2VZDA 2D89A 3JALM 2L3GA 5A38A 2K3SA 3KY9A 3HOCA 1MB8A 4Q57B 2QJXA 2QJZA 4TXKA 3KMUB 3I6XA 1UEGA 1WYOA 1WJOA 4EDNA 5A36A 5L0OA 5J8EA 1WYPA 2YRNA 3FERA 4EDMA 5A4BA 1SH5A 2EYIA 3HORA 2EYNA 1P5SA 1VKAA 2VZCA 1DXXA 1WYNA 2WA6A 1RT8A 3REPB 2RR8A 1P2XA 1BHDA 1AOAA 2R0OA 4TXIA 1WYRA 2K2RA 2D88A 2D87A 2VZGB 2VZIB 2WA7A 5BVRA 2E9KA 3F7PA 1WYQA 4Q59A 1BKRA 2R8UA 2WA5A
chains in the Genus database with same CATH superfamily
1SH6A 1QAGA 1V5KA 5FMTA 4Q58A 2HKPA 3JAKM 1WIXA 2D86A 1AA2A 1PXYA 1TJTA 2IGPA 5A37A 1WKUA 2D85A 1WYMA 2DK9A 1UJOA 3KMWB 4EDLA 2WDTA 4B7LA 2EE7A 1H67A 1PA7A 2WFNA 2JV9A 3JARM 3HOPA 3VP7A 4DDPA 1WYLA 3CO1A 2VZDA 2D89A 2WE6A 3JALM 2L3GA 1EUVA 5A38A 2K3SA 3KY9A 3EAYA 3HOCA 4LVPA 1MB8A 4Q57B 2QJXA 2QJZA 4TXKA 3KMUB 3I6XA 2EQOA 1UEGA 1WYOA 1WJOA 4EDNA 5A36A 5L0OA 5J8EA 1WYPA 2YRNA 3FERA 4EDMA 2VE7C 5A4BA 1SH5A 2EYIA 3HORA 2EYNA 1P5SA 2HL9A 1VKAA 2VZCA 1DXXA 1WYNA 2WA6A 1RT8A 3REPB 2RR8A 1P2XA 1BHDA 1AOAA 2R0OA 5FMUA 4TXIA 1WYRA 2K2RA 2D88A 2D87A 2HL8A 2VZGB 2VZIB 2WA7A 5BVRA 2E9KA 3F7PA 2VE7A 1WYQA 4Q59A 4LVRA 1BKRA 2R8UA 2WA5A
chains in the Genus database with same CATH topology
1SH6A 1QAGA 1V5KA 4Q58A 3JAKM 1WIXA 2D86A 1AA2A 1PXYA 1TJTA 5A37A 1WKUA 2D85A 1WYMA 2DK9A 3KMWB 1UJOA 4EDLA 4B7LA 2EE7A 1H67A 1PA7A 2WFNA 2JV9A 3JARM 3HOPA 1WYLA 3CO1A 2VZDA 2D89A 3JALM 2L3GA 5A38A 2K3SA 3KY9A 3HOCA 1MB8A 4Q57B 2QJXA 2QJZA 4TXKA 3KMUB 3I6XA 1UEGA 1WYOA 1WJOA 4EDNA 5A36A 5L0OA 5J8EA 1WYPA 2YRNA 3FERA 4EDMA 5A4BA 1SH5A 2EYIA 3HORA 2EYNA 1P5SA 1VKAA 2VZCA 1DXXA 1WYNA 2WA6A 1RT8A 3REPB 2RR8A 1P2XA 1BHDA 1AOAA 2R0OA 4TXIA 1WYRA 2K2RA 2D88A 2D87A 2VZGB 2VZIB 2WA7A 5BVRA 2E9KA 3F7PA 1WYQA 4Q59A 1BKRA 2R8UA 2WA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SH6 A;  1QAG A;  1V5K A;  4Q58 A;  3JAK M;  1WIX A;  2D86 A;  1AA2 A;  1PXY A;  1TJT A;  5A37 A;  1WKU A;  2D85 A;  1WYM A;  2DK9 A;  3KMW B;  1UJO A;  4EDL A;  4B7L A;  2EE7 A;  1H67 A;  1PA7 A;  2WFN A;  2JV9 A;  3JAR M;  3HOP A;  1WYL A;  3CO1 A;  2VZD A;  2D89 A;  3JAL M;  2L3G A;  5A38 A;  2K3S A;  3KY9 A;  3HOC A;  1MB8 A;  4Q57 B;  2QJX A;  2QJZ A;  4TXK A;  3KMU B;  3I6X A;  1UEG A;  1WYO A;  1WJO A;  4EDN A;  5A36 A;  5L0O A;  5J8E A;  1WYP A;  2YRN A;  3FER A;  4EDM A;  5A4B A;  1SH5 A;  2EYI A;  3HOR A;  2EYN A;  1P5S A;  1VKA A;  2VZC A;  1DXX A;  1WYN A;  2WA6 A;  1RT8 A;  3REP B;  2RR8 A;  1P2X A;  1BHD A;  1AOA A;  2R0O A;  4TXI A;  1WYR A;  2K2R A;  2D88 A;  2D87 A;  2VZG B;  2VZI B;  2WA7 A;  5BVR A;  2E9K A;  3F7P A;  1WYQ A;  4Q59 A;  1BKR A;  2R8U A;  2WA5 A; 
#chains in the Genus database with same CATH topology
 1SH6 A;  1QAG A;  1V5K A;  5FMT A;  4Q58 A;  2HKP A;  3JAK M;  1WIX A;  2D86 A;  1AA2 A;  1PXY A;  1TJT A;  2IGP A;  5A37 A;  1WKU A;  2D85 A;  1WYM A;  2DK9 A;  1UJO A;  3KMW B;  4EDL A;  2WDT A;  4B7L A;  2EE7 A;  1H67 A;  1PA7 A;  2WFN A;  2JV9 A;  3JAR M;  3HOP A;  3VP7 A;  4DDP A;  1WYL A;  3CO1 A;  2VZD A;  2D89 A;  2WE6 A;  3JAL M;  2L3G A;  1EUV A;  5A38 A;  2K3S A;  3KY9 A;  3EAY A;  3HOC A;  4LVP A;  1MB8 A;  4Q57 B;  2QJX A;  2QJZ A;  4TXK A;  3KMU B;  3I6X A;  2EQO A;  1UEG A;  1WYO A;  1WJO A;  4EDN A;  5A36 A;  5L0O A;  5J8E A;  1WYP A;  2YRN A;  3FER A;  4EDM A;  2VE7 C;  5A4B A;  1SH5 A;  2EYI A;  3HOR A;  2EYN A;  1P5S A;  2HL9 A;  1VKA A;  2VZC A;  1DXX A;  1WYN A;  2WA6 A;  1RT8 A;  3REP B;  2RR8 A;  1P2X A;  1BHD A;  1AOA A;  2R0O A;  5FMU A;  4TXI A;  1WYR A;  2K2R A;  2D88 A;  2D87 A;  2HL8 A;  2VZG B;  2VZI B;  2WA7 A;  5BVR A;  2E9K A;  3F7P A;  2VE7 A;  1WYQ A;  4Q59 A;  4LVR A;  1BKR A;  2R8U A;  2WA5 A; 
#chains in the Genus database with same CATH homology
 1SH6 A;  1QAG A;  1V5K A;  4Q58 A;  3JAK M;  1WIX A;  2D86 A;  1AA2 A;  1PXY A;  1TJT A;  5A37 A;  1WKU A;  2D85 A;  1WYM A;  2DK9 A;  3KMW B;  1UJO A;  4EDL A;  4B7L A;  2EE7 A;  1H67 A;  1PA7 A;  2WFN A;  2JV9 A;  3JAR M;  3HOP A;  1WYL A;  3CO1 A;  2VZD A;  2D89 A;  3JAL M;  2L3G A;  5A38 A;  2K3S A;  3KY9 A;  3HOC A;  1MB8 A;  4Q57 B;  2QJX A;  2QJZ A;  4TXK A;  3KMU B;  3I6X A;  1UEG A;  1WYO A;  1WJO A;  4EDN A;  5A36 A;  5L0O A;  5J8E A;  1WYP A;  2YRN A;  3FER A;  4EDM A;  5A4B A;  1SH5 A;  2EYI A;  3HOR A;  2EYN A;  1P5S A;  1VKA A;  2VZC A;  1DXX A;  1WYN A;  2WA6 A;  1RT8 A;  3REP B;  2RR8 A;  1P2X A;  1BHD A;  1AOA A;  2R0O A;  4TXI A;  1WYR A;  2K2R A;  2D88 A;  2D87 A;  2VZG B;  2VZI B;  2WA7 A;  5BVR A;  2E9K A;  3F7P A;  1WYQ A;  4Q59 A;  1BKR A;  2R8U A;  2WA5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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