4Q59A

Crystal structure of plectin 1a actin-binding domain
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
226
structure length
226
Chain Sequence
DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of plectin 1a actin-binding domain
rcsb
molecule tags Structural protein
molecule keywords Plectin
total genus 83
structure length 226
sequence length 226
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q59A02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4q59A01
5J8EA 5BVRA 1DXXA 2D89A 3HOCA 2L3GA 3KMUB 1VKAA 5A37A 3JAKM 3FERA 1AA2A 3I6XA 3REPB 2RR8A 3F7PA 2D87A 2EE7A 2D85A 1QAGA 1TJTA 2D86A 4Q57B 5A36A 1PA7A 1BKRA 4TXKA 4TXIA 1BHDA 1WYPA 3CO1A 4EDMA 1P5SA 2VZDA 4Q58A 4B7LA 2VZCA 4Q59A 1WYRA 1SH5A 1P2XA 2YRNA 1WYLA 3HOPA 1SH6A 1MB8A 1WYMA 1H67A 1UJOA 3JARM 2QJZA 2E9KA 1WIXA 2DK9A 2EYNA 1WKUA 3JALM 1WJOA 1AOAA 2VZGB 2JV9A 2WA6A 2QJXA 3HORA 5L0OA 1RT8A 4EDNA 2VZIB 5A4BA 2EYIA 3KMWB 1PXYA 1WYNA 3KY9A 2R8UA 2K2RA 2R0OA 2D88A 2WA7A 1UEGA 5A38A 1V5KA 2K3SA 2WA5A 2WFNA 1WYOA 1WYQA 4EDLA
chains in the Genus database with same CATH superfamily
5J8EA 1EUVA 5BVRA 1DXXA 2D89A 3HOCA 2L3GA 5FMUA 3KMUB 4DDPA 1VKAA 2HKPA 5A37A 3JAKM 3FERA 1AA2A 3I6XA 2WDTA 3REPB 2RR8A 3F7PA 2D87A 2EE7A 2D85A 1QAGA 1TJTA 2D86A 4LVRA 4Q57B 5A36A 1PA7A 1BKRA 4TXKA 4TXIA 1BHDA 1WYPA 3CO1A 4EDMA 1P5SA 2VZDA 4Q58A 4B7LA 2VZCA 4Q59A 1WYRA 2HL8A 1SH5A 2IGPA 1P2XA 2YRNA 1WYLA 3HOPA 1SH6A 1MB8A 1WYMA 1H67A 2VE7A 1UJOA 3JARM 2QJZA 2E9KA 2VE7C 3VP7A 1WIXA 2DK9A 2EYNA 2HL9A 1WKUA 3JALM 1WJOA 5FMTA 1AOAA 2VZGB 2JV9A 4LVPA 3EAYA 2WA6A 2QJXA 3HORA 5L0OA 1RT8A 4EDNA 2VZIB 5A4BA 2EYIA 3KMWB 1PXYA 1WYNA 3KY9A 2WE6A 2R8UA 2K2RA 2R0OA 2D88A 2EQOA 2WA7A 1UEGA 5A38A 1V5KA 2K3SA 2WA5A 2WFNA 1WYOA 1WYQA 4EDLA
chains in the Genus database with same CATH topology
5J8EA 5BVRA 1DXXA 2D89A 3HOCA 2L3GA 3KMUB 1VKAA 5A37A 3JAKM 3FERA 1AA2A 3I6XA 3REPB 2RR8A 3F7PA 2D87A 2EE7A 2D85A 1QAGA 1TJTA 2D86A 4Q57B 5A36A 1PA7A 1BKRA 4TXKA 4TXIA 1BHDA 1WYPA 3CO1A 4EDMA 1P5SA 2VZDA 4Q58A 4B7LA 2VZCA 4Q59A 1WYRA 1SH5A 1P2XA 2YRNA 1WYLA 3HOPA 1SH6A 1MB8A 1WYMA 1H67A 1UJOA 3JARM 2QJZA 2E9KA 1WIXA 2DK9A 2EYNA 1WKUA 3JALM 1WJOA 1AOAA 2VZGB 2JV9A 2WA6A 2QJXA 3HORA 5L0OA 1RT8A 4EDNA 2VZIB 5A4BA 2EYIA 3KMWB 1PXYA 1WYNA 3KY9A 2R8UA 2K2RA 2R0OA 2D88A 2WA7A 1UEGA 5A38A 1V5KA 2K3SA 2WA5A 2WFNA 1WYOA 1WYQA 4EDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5J8E A;  5BVR A;  1DXX A;  2D89 A;  3HOC A;  2L3G A;  3KMU B;  1VKA A;  5A37 A;  3JAK M;  3FER A;  1AA2 A;  3I6X A;  3REP B;  2RR8 A;  3F7P A;  2D87 A;  2EE7 A;  2D85 A;  1QAG A;  1TJT A;  2D86 A;  4Q57 B;  5A36 A;  1PA7 A;  1BKR A;  4TXK A;  4TXI A;  1BHD A;  1WYP A;  3CO1 A;  4EDM A;  1P5S A;  2VZD A;  4Q58 A;  4B7L A;  2VZC A;  4Q59 A;  1WYR A;  1SH5 A;  1P2X A;  2YRN A;  1WYL A;  3HOP A;  1SH6 A;  1MB8 A;  1WYM A;  1H67 A;  1UJO A;  3JAR M;  2QJZ A;  2E9K A;  1WIX A;  2DK9 A;  2EYN A;  1WKU A;  3JAL M;  1WJO A;  1AOA A;  2VZG B;  2JV9 A;  2WA6 A;  2QJX A;  3HOR A;  5L0O A;  1RT8 A;  4EDN A;  2VZI B;  5A4B A;  2EYI A;  3KMW B;  1PXY A;  1WYN A;  3KY9 A;  2R8U A;  2K2R A;  2R0O A;  2D88 A;  2WA7 A;  1UEG A;  5A38 A;  1V5K A;  2K3S A;  2WA5 A;  2WFN A;  1WYO A;  1WYQ A;  4EDL A; 
#chains in the Genus database with same CATH topology
 5J8E A;  1EUV A;  5BVR A;  1DXX A;  2D89 A;  3HOC A;  2L3G A;  5FMU A;  3KMU B;  4DDP A;  1VKA A;  2HKP A;  5A37 A;  3JAK M;  3FER A;  1AA2 A;  3I6X A;  2WDT A;  3REP B;  2RR8 A;  3F7P A;  2D87 A;  2EE7 A;  2D85 A;  1QAG A;  1TJT A;  2D86 A;  4LVR A;  4Q57 B;  5A36 A;  1PA7 A;  1BKR A;  4TXK A;  4TXI A;  1BHD A;  1WYP A;  3CO1 A;  4EDM A;  1P5S A;  2VZD A;  4Q58 A;  4B7L A;  2VZC A;  4Q59 A;  1WYR A;  2HL8 A;  1SH5 A;  2IGP A;  1P2X A;  2YRN A;  1WYL A;  3HOP A;  1SH6 A;  1MB8 A;  1WYM A;  1H67 A;  2VE7 A;  1UJO A;  3JAR M;  2QJZ A;  2E9K A;  2VE7 C;  3VP7 A;  1WIX A;  2DK9 A;  2EYN A;  2HL9 A;  1WKU A;  3JAL M;  1WJO A;  5FMT A;  1AOA A;  2VZG B;  2JV9 A;  4LVP A;  3EAY A;  2WA6 A;  2QJX A;  3HOR A;  5L0O A;  1RT8 A;  4EDN A;  2VZI B;  5A4B A;  2EYI A;  3KMW B;  1PXY A;  1WYN A;  3KY9 A;  2WE6 A;  2R8U A;  2K2R A;  2R0O A;  2D88 A;  2EQO A;  2WA7 A;  1UEG A;  5A38 A;  1V5K A;  2K3S A;  2WA5 A;  2WFN A;  1WYO A;  1WYQ A;  4EDL A; 
#chains in the Genus database with same CATH homology
 5J8E A;  5BVR A;  1DXX A;  2D89 A;  3HOC A;  2L3G A;  3KMU B;  1VKA A;  5A37 A;  3JAK M;  3FER A;  1AA2 A;  3I6X A;  3REP B;  2RR8 A;  3F7P A;  2D87 A;  2EE7 A;  2D85 A;  1QAG A;  1TJT A;  2D86 A;  4Q57 B;  5A36 A;  1PA7 A;  1BKR A;  4TXK A;  4TXI A;  1BHD A;  1WYP A;  3CO1 A;  4EDM A;  1P5S A;  2VZD A;  4Q58 A;  4B7L A;  2VZC A;  4Q59 A;  1WYR A;  1SH5 A;  1P2X A;  2YRN A;  1WYL A;  3HOP A;  1SH6 A;  1MB8 A;  1WYM A;  1H67 A;  1UJO A;  3JAR M;  2QJZ A;  2E9K A;  1WIX A;  2DK9 A;  2EYN A;  1WKU A;  3JAL M;  1WJO A;  1AOA A;  2VZG B;  2JV9 A;  2WA6 A;  2QJX A;  3HOR A;  5L0O A;  1RT8 A;  4EDN A;  2VZI B;  5A4B A;  2EYI A;  3KMW B;  1PXY A;  1WYN A;  3KY9 A;  2R8U A;  2K2R A;  2R0O A;  2D88 A;  2WA7 A;  1UEG A;  5A38 A;  1V5K A;  2K3S A;  2WA5 A;  2WFN A;  1WYO A;  1WYQ A;  4EDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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