4EDLA

Crystal structure of beta-parvin ch2 domain
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
129
structure length
129
Chain Sequence
RFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHHFYLTPESFDQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKNVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Beta-parvin
publication title Structural basis for paxillin binding and focal adhesion targeting of beta-parvin.
pubmed doi rcsb
source organism Homo sapiens
total genus 43
structure length 129
sequence length 129
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2012-03-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 4edlA00
1BHDA 3KMWB 2DK9A 2WFNA 4EDLA 4EDNA 1WYMA 4Q57B 2K2RA 2VZCA 4TXKA 3KY9A 2WA7A 2R0OA 1TJTA 2WA6A 3F7PA 1WYLA 4EDMA 3HOCA 2QJXA 2VZDA 2D89A 3FERA 2EYNA 3KMUB 1UEGA 2D86A 2RR8A 1WYRA 3JALM 1WYNA 2EYIA 1DXXA 1PA7A 1H67A 5J8EA 2YRNA 1WJOA 1SH5A 1BKRA 4TXIA 2VZGB 5L0OA 3HOPA 4Q58A 2L3GA 3JARM 1P2XA 5A37A 5A36A 1P5SA 1AA2A 5A38A 2VZIB 1SH6A 3I6XA 1VKAA 2E9KA 1WYQA 3CO1A 1PXYA 2JV9A 2EE7A 4Q59A 1V5KA 2D85A 1MB8A 2R8UA 3HORA 2QJZA 1QAGA 1RT8A 5BVRA 4B7LA 1WYPA 1WKUA 1WIXA 2D87A 2D88A 1AOAA 5A4BA 1WYOA 3JAKM 3REPB 2WA5A 2K3SA 1UJOA
chains in the Genus database with same CATH superfamily
1BHDA 3KMWB 2DK9A 2WFNA 4EDLA 2EQOA 2HL8A 4EDNA 1WYMA 4Q57B 2K2RA 2VZCA 4TXKA 3KY9A 2WA7A 2R0OA 1TJTA 2WA6A 3F7PA 1WYLA 4EDMA 3HOCA 2QJXA 2VZDA 1EUVA 2D89A 3FERA 2EYNA 2HKPA 3KMUB 1UEGA 2D86A 2RR8A 1WYRA 4DDPA 3JALM 2IGPA 4LVPA 2HL9A 1WYNA 2EYIA 1DXXA 1PA7A 1H67A 2WE6A 5J8EA 4LVRA 2YRNA 1WJOA 1SH5A 1BKRA 4TXIA 2VZGB 5L0OA 2WDTA 2VE7C 3HOPA 4Q58A 2L3GA 3JARM 1P2XA 3VP7A 5A37A 5A36A 1P5SA 1AA2A 5A38A 2VZIB 1SH6A 3I6XA 1VKAA 2E9KA 1WYQA 3CO1A 1PXYA 2JV9A 2EE7A 4Q59A 1V5KA 2VE7A 2D85A 1MB8A 2R8UA 3HORA 2QJZA 1QAGA 1RT8A 5BVRA 4B7LA 1WYPA 3EAYA 1WKUA 1WIXA 2D87A 5FMUA 2D88A 1AOAA 5A4BA 1WYOA 5FMTA 3JAKM 3REPB 2WA5A 2K3SA 1UJOA
chains in the Genus database with same CATH topology
1BHDA 3KMWB 2DK9A 2WFNA 4EDLA 4EDNA 1WYMA 4Q57B 2K2RA 2VZCA 4TXKA 3KY9A 2WA7A 2R0OA 1TJTA 2WA6A 3F7PA 1WYLA 4EDMA 3HOCA 2QJXA 2VZDA 2D89A 3FERA 2EYNA 3KMUB 1UEGA 2D86A 2RR8A 1WYRA 3JALM 1WYNA 2EYIA 1DXXA 1PA7A 1H67A 5J8EA 2YRNA 1WJOA 1SH5A 1BKRA 4TXIA 2VZGB 5L0OA 3HOPA 4Q58A 2L3GA 3JARM 1P2XA 5A37A 5A36A 1P5SA 1AA2A 5A38A 2VZIB 1SH6A 3I6XA 1VKAA 2E9KA 1WYQA 3CO1A 1PXYA 2JV9A 2EE7A 4Q59A 1V5KA 2D85A 1MB8A 2R8UA 3HORA 2QJZA 1QAGA 1RT8A 5BVRA 4B7LA 1WYPA 1WKUA 1WIXA 2D87A 2D88A 1AOAA 5A4BA 1WYOA 3JAKM 3REPB 2WA5A 2K3SA 1UJOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BHD A;  3KMW B;  2DK9 A;  2WFN A;  4EDL A;  4EDN A;  1WYM A;  4Q57 B;  2K2R A;  2VZC A;  4TXK A;  3KY9 A;  2WA7 A;  2R0O A;  1TJT A;  2WA6 A;  3F7P A;  1WYL A;  4EDM A;  3HOC A;  2QJX A;  2VZD A;  2D89 A;  3FER A;  2EYN A;  3KMU B;  1UEG A;  2D86 A;  2RR8 A;  1WYR A;  3JAL M;  1WYN A;  2EYI A;  1DXX A;  1PA7 A;  1H67 A;  5J8E A;  2YRN A;  1WJO A;  1SH5 A;  1BKR A;  4TXI A;  2VZG B;  5L0O A;  3HOP A;  4Q58 A;  2L3G A;  3JAR M;  1P2X A;  5A37 A;  5A36 A;  1P5S A;  1AA2 A;  5A38 A;  2VZI B;  1SH6 A;  3I6X A;  1VKA A;  2E9K A;  1WYQ A;  3CO1 A;  1PXY A;  2JV9 A;  2EE7 A;  4Q59 A;  1V5K A;  2D85 A;  1MB8 A;  2R8U A;  3HOR A;  2QJZ A;  1QAG A;  1RT8 A;  5BVR A;  4B7L A;  1WYP A;  1WKU A;  1WIX A;  2D87 A;  2D88 A;  1AOA A;  5A4B A;  1WYO A;  3JAK M;  3REP B;  2WA5 A;  2K3S A;  1UJO A; 
#chains in the Genus database with same CATH topology
 1BHD A;  3KMW B;  2DK9 A;  2WFN A;  4EDL A;  2EQO A;  2HL8 A;  4EDN A;  1WYM A;  4Q57 B;  2K2R A;  2VZC A;  4TXK A;  3KY9 A;  2WA7 A;  2R0O A;  1TJT A;  2WA6 A;  3F7P A;  1WYL A;  4EDM A;  3HOC A;  2QJX A;  2VZD A;  1EUV A;  2D89 A;  3FER A;  2EYN A;  2HKP A;  3KMU B;  1UEG A;  2D86 A;  2RR8 A;  1WYR A;  4DDP A;  3JAL M;  2IGP A;  4LVP A;  2HL9 A;  1WYN A;  2EYI A;  1DXX A;  1PA7 A;  1H67 A;  2WE6 A;  5J8E A;  4LVR A;  2YRN A;  1WJO A;  1SH5 A;  1BKR A;  4TXI A;  2VZG B;  5L0O A;  2WDT A;  2VE7 C;  3HOP A;  4Q58 A;  2L3G A;  3JAR M;  1P2X A;  3VP7 A;  5A37 A;  5A36 A;  1P5S A;  1AA2 A;  5A38 A;  2VZI B;  1SH6 A;  3I6X A;  1VKA A;  2E9K A;  1WYQ A;  3CO1 A;  1PXY A;  2JV9 A;  2EE7 A;  4Q59 A;  1V5K A;  2VE7 A;  2D85 A;  1MB8 A;  2R8U A;  3HOR A;  2QJZ A;  1QAG A;  1RT8 A;  5BVR A;  4B7L A;  1WYP A;  3EAY A;  1WKU A;  1WIX A;  2D87 A;  5FMU A;  2D88 A;  1AOA A;  5A4B A;  1WYO A;  5FMT A;  3JAK M;  3REP B;  2WA5 A;  2K3S A;  1UJO A; 
#chains in the Genus database with same CATH homology
 1BHD A;  3KMW B;  2DK9 A;  2WFN A;  4EDL A;  4EDN A;  1WYM A;  4Q57 B;  2K2R A;  2VZC A;  4TXK A;  3KY9 A;  2WA7 A;  2R0O A;  1TJT A;  2WA6 A;  3F7P A;  1WYL A;  4EDM A;  3HOC A;  2QJX A;  2VZD A;  2D89 A;  3FER A;  2EYN A;  3KMU B;  1UEG A;  2D86 A;  2RR8 A;  1WYR A;  3JAL M;  1WYN A;  2EYI A;  1DXX A;  1PA7 A;  1H67 A;  5J8E A;  2YRN A;  1WJO A;  1SH5 A;  1BKR A;  4TXI A;  2VZG B;  5L0O A;  3HOP A;  4Q58 A;  2L3G A;  3JAR M;  1P2X A;  5A37 A;  5A36 A;  1P5S A;  1AA2 A;  5A38 A;  2VZI B;  1SH6 A;  3I6X A;  1VKA A;  2E9K A;  1WYQ A;  3CO1 A;  1PXY A;  2JV9 A;  2EE7 A;  4Q59 A;  1V5K A;  2D85 A;  1MB8 A;  2R8U A;  3HOR A;  2QJZ A;  1QAG A;  1RT8 A;  5BVR A;  4B7L A;  1WYP A;  1WKU A;  1WIX A;  2D87 A;  2D88 A;  1AOA A;  5A4B A;  1WYO A;  3JAK M;  3REP B;  2WA5 A;  2K3S A;  1UJO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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