1EUVA

X-ray structure of the c-terminal ulp1 protease domain in complex with smt3, the yeast ortholog of sumo.
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
221
structure length
221
Chain Sequence
GSLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Saccharomyces cerevisiae
publication title Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast.
pubmed doi rcsb
molecule keywords ULP1 PROTEASE
total genus 71
structure length 221
sequence length 221
ec nomenclature ec 3.4.22.68: Ulp1 peptidase.
pdb deposition date 2000-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.20 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 1euvA01
3.30.310.130 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Ubiquitin-related 1euvA02
2HL9A 2HL8A 1EUVA 2HKPA 3EAYA
chains in the Genus database with same CATH superfamily
2Y8QA 3ASMA 2WA6A 2QRCA 3KTUA 3OSMA 1KFIA 4Q58A 1UEGA 2D0BA 1VTLE 3DPUA 2E9KA 1K2YX 3SNSA 1W80A 2NOHA 3KRMA 2DK9A 4Q59A 2MJ7A 3F10A 5JMVD 2YRNA 4RODB 1QN6A 2V9JA 1UJOA 3CWUA 3HS8A 2OOXA 3EAYA 3TE5A 3F7PA 3HOPA 5IYDP 2EYNA 4EAKA 2VE7C 4EAIA 3NA5A 2FKFA 3OH6A 1RT8A 1EUVA 1PA7A 1WJOA 3HS9A 1QTSA 5J8EA 1LXTA 3EIKA 3PDKA 3ENCA 3I3WA 1PVSA 3ENOC 1C9BB 4Q57B 1WKUA 2VJ0A 2D88A 3OC3C 2HZMA 5EPCA 1QN9A 2HL8A 2H5AX 2O3OA 1H67A 3CW7A 1YTBA 1T6AA 3VP7A 1QNBA 2DKDA 2IV8A 2MZ8A 4TPSA 3C04A 2EQOA 1P5DX 3DPTA 3OSTA 3JARM 4EAJA 4WX8A 1PZDA 2DKCA 2V8QA 1KY7A 1QNAA 1KO9A 5FMTA 1WYRA 1E42A 1KYUA 1Q9UA 4WZSD 1P5GX 1WJWA 4EDNA 2YH5A 2ZFDB 1YTFA 3JALM 1C4GA 2WA5A 3HOCA 2R0OA 5BMNA 3REPB 1DIZA 1QTPA 2VZGB 1N3CA 1LWWA 2VZIB 5IYCP 1WYQA 4EDLA 4B0AA 4EAGA 5A38A 2EYIA 1QAGA 2NOIA 1VOKA 1AA2A 2D87A 1KYFA 1KFQA 2G30A 1M3HA 5FMUA 1HU0A 2D0CA 4EJYA 5A37A 3VN5A 4LVRA 1K35A 2EE7A 2IGPA 2WFNA 1BHDA 1YQRA 4B7LA 4QG5A 1XSZA 1LWYA 3JAKM 2Y8LA 1UT7A 3KMWB 1MP9A 1NGMA 5HSHA 3UW2A 1SH6A 1WYMA 3RSMA 5BVRA 2R8UA 4EDMA 1QN7A 3I0WA 1TGHA 4MRQA 1TBAB 2I5WA 1YQKA 1YQLA 1V5KA 2H4LX 2NLVA 4Q11A 3D4VA 2D86A 1JDYA 4IL8A 5BMPA 2QREA 2F7LA 2QR1A 5AN4A 1VKLA 1R4XA 1QN5A 4BJUA 1QNCA 1FN7A 3BKQX 1RM1A 2NWVA 3OCIA 1JFIC 1WYPA 2IV9A 2JPIA 5KL0A 1N3AA 2NOFA 1TUOA 1NVPA 4EJZA 2FUVA 1VKAA 5F9CA 3CO1A 2QLVA 4D7RA 1KY6A 1PCZA 1AISA 4HJHA 2HKPA 2HZSA 1WYNA 2L3GA 2LAEA 2NOZA 2FKMX 1QN3A 1PXYA 1AOAA 4EALA 3CVTA 3IH7A 2JV9A 2V92A 3F0ZA 4TXKA 1WIXA 2WA7A 2OOYA 1UL7A 2DKAA 1EBMA 4C7PA 2VZDA 3CWSA 1D3UA 3N89A 2VZCA 4LVPA 2NOBA 1KYDA 2D85A 3TDHA 2Z0FA 2EHBD 1V5SA 1P5SA 1M5Q1 1NH2A 2FGTA 1VOLB 1WYLA 1LWVA 1P2XA 3KY9A 1CDWA 2XHIA 2VE7A 1VTOA 1M3QA 1J3MA 1B9KA 2K3SA 2R5XA 3CVSA 1C47A 5JN5A 2JOIA 2PWWA 2D89A 3FERA 4D7QA 1YQMA 3I0XA 3OSEA 1MPGA 3HORA 2QRDA 4I8OA 3CWAA 1QNEA 3RPJA 2NOLA 2D0AA 3OGDA 3CWTA 2HL9A 4DDPA 2WDTA 1TJTA 3T4NA 3OLPA 2WE6A 5IYBP 1MB8A 3I6XA 2NVMA 4CFFA 1DXXA 4TXIA 2RR8A 1SH5A 1TBPA 2YA3A 1PCJX 4PY5A 5A4BA 1WYOA 2QJZA 1QN8A 3OH9A 2JHJA 2JHNA 1N39A 4ROCB 2NOEA 2QJXA 3ULXA 4ROEB 1PCMX 5L0OA 3D7QA 5A36A 3PMGA 4DULA 1UT4A 3H1ZA 1WQAA 1QN4A 3KMUB 1BKRA 2K2RA 2Z8UA 4WXAA
chains in the Genus database with same CATH topology
2EQOA 4LVRA 5FMTA 2HL9A 2HL8A 5FMUA 1EUVA 4DDPA 2IGPA 2WDTA 4LVPA 2HKPA 2VE7A 2VE7C 3EAYA 3VP7A 2WE6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HL9 A;  2HL8 A;  1EUV A;  2HKP A;  3EAY A; 
#chains in the Genus database with same CATH topology
 2Y8Q A;  3ASM A;  2WA6 A;  2QRC A;  3KTU A;  3OSM A;  1KFI A;  4Q58 A;  1UEG A;  2D0B A;  1VTL E;  3DPU A;  2E9K A;  1K2Y X;  3SNS A;  1W80 A;  2NOH A;  3KRM A;  2DK9 A;  4Q59 A;  2MJ7 A;  3F10 A;  5JMV D;  2YRN A;  4ROD B;  1QN6 A;  2V9J A;  1UJO A;  3CWU A;  3HS8 A;  2OOX A;  3EAY A;  3TE5 A;  3F7P A;  3HOP A;  5IYD P;  2EYN A;  4EAK A;  2VE7 C;  4EAI A;  3NA5 A;  2FKF A;  3OH6 A;  1RT8 A;  1EUV A;  1PA7 A;  1WJO A;  3HS9 A;  1QTS A;  5J8E A;  1LXT A;  3EIK A;  3PDK A;  3ENC A;  3I3W A;  1PVS A;  3ENO C;  1C9B B;  4Q57 B;  1WKU A;  2VJ0 A;  2D88 A;  3OC3 C;  2HZM A;  5EPC A;  1QN9 A;  2HL8 A;  2H5A X;  2O3O A;  1H67 A;  3CW7 A;  1YTB A;  1T6A A;  3VP7 A;  1QNB A;  2DKD A;  2IV8 A;  2MZ8 A;  4TPS A;  3C04 A;  2EQO A;  1P5D X;  3DPT A;  3OST A;  3JAR M;  4EAJ A;  4WX8 A;  1PZD A;  2DKC A;  2V8Q A;  1KY7 A;  1QNA A;  1KO9 A;  5FMT A;  1WYR A;  1E42 A;  1KYU A;  1Q9U A;  4WZS D;  1P5G X;  1WJW A;  4EDN A;  2YH5 A;  2ZFD B;  1YTF A;  3JAL M;  1C4G A;  2WA5 A;  3HOC A;  2R0O A;  5BMN A;  3REP B;  1DIZ A;  1QTP A;  2VZG B;  1N3C A;  1LWW A;  2VZI B;  5IYC P;  1WYQ A;  4EDL A;  4B0A A;  4EAG A;  5A38 A;  2EYI A;  1QAG A;  2NOI A;  1VOK A;  1AA2 A;  2D87 A;  1KYF A;  1KFQ A;  2G30 A;  1M3H A;  5FMU A;  1HU0 A;  2D0C A;  4EJY A;  5A37 A;  3VN5 A;  4LVR A;  1K35 A;  2EE7 A;  2IGP A;  2WFN A;  1BHD A;  1YQR A;  4B7L A;  4QG5 A;  1XSZ A;  1LWY A;  3JAK M;  2Y8L A;  1UT7 A;  3KMW B;  1MP9 A;  1NGM A;  5HSH A;  3UW2 A;  1SH6 A;  1WYM A;  3RSM A;  5BVR A;  2R8U A;  4EDM A;  1QN7 A;  3I0W A;  1TGH A;  4MRQ A;  1TBA B;  2I5W A;  1YQK A;  1YQL A;  1V5K A;  2H4L X;  2NLV A;  4Q11 A;  3D4V A;  2D86 A;  1JDY A;  4IL8 A;  5BMP A;  2QRE A;  2F7L A;  2QR1 A;  5AN4 A;  1VKL A;  1R4X A;  1QN5 A;  4BJU A;  1QNC A;  1FN7 A;  3BKQ X;  1RM1 A;  2NWV A;  3OCI A;  1JFI C;  1WYP A;  2IV9 A;  2JPI A;  5KL0 A;  1N3A A;  2NOF A;  1TUO A;  1NVP A;  4EJZ A;  2FUV A;  1VKA A;  5F9C A;  3CO1 A;  2QLV A;  4D7R A;  1KY6 A;  1PCZ A;  1AIS A;  4HJH A;  2HKP A;  2HZS A;  1WYN A;  2L3G A;  2LAE A;  2NOZ A;  2FKM X;  1QN3 A;  1PXY A;  1AOA A;  4EAL A;  3CVT A;  3IH7 A;  2JV9 A;  2V92 A;  3F0Z A;  4TXK A;  1WIX A;  2WA7 A;  2OOY A;  1UL7 A;  2DKA A;  1EBM A;  4C7P A;  2VZD A;  3CWS A;  1D3U A;  3N89 A;  2VZC A;  4LVP A;  2NOB A;  1KYD A;  2D85 A;  3TDH A;  2Z0F A;  2EHB D;  1V5S A;  1P5S A;  1M5Q 1;  1NH2 A;  2FGT A;  1VOL B;  1WYL A;  1LWV A;  1P2X A;  3KY9 A;  1CDW A;  2XHI A;  2VE7 A;  1VTO A;  1M3Q A;  1J3M A;  1B9K A;  2K3S A;  2R5X A;  3CVS A;  1C47 A;  5JN5 A;  2JOI A;  2PWW A;  2D89 A;  3FER A;  4D7Q A;  1YQM A;  3I0X A;  3OSE A;  1MPG A;  3HOR A;  2QRD A;  4I8O A;  3CWA A;  1QNE A;  3RPJ A;  2NOL A;  2D0A A;  3OGD A;  3CWT A;  2HL9 A;  4DDP A;  2WDT A;  1TJT A;  3T4N A;  3OLP A;  2WE6 A;  5IYB P;  1MB8 A;  3I6X A;  2NVM A;  4CFF A;  1DXX A;  4TXI A;  2RR8 A;  1SH5 A;  1TBP A;  2YA3 A;  1PCJ X;  4PY5 A;  5A4B A;  1WYO A;  2QJZ A;  1QN8 A;  3OH9 A;  2JHJ A;  2JHN A;  1N39 A;  4ROC B;  2NOE A;  2QJX A;  3ULX A;  4ROE B;  1PCM X;  5L0O A;  3D7Q A;  5A36 A;  3PMG A;  4DUL A;  1UT4 A;  3H1Z A;  1WQA A;  1QN4 A;  3KMU B;  1BKR A;  2K2R A;  2Z8U A;  4WXA A; 
#chains in the Genus database with same CATH homology
 2EQO A;  4LVR A;  5FMT A;  2HL9 A;  2HL8 A;  5FMU A;  1EUV A;  4DDP A;  2IGP A;  2WDT A;  4LVP A;  2HKP A;  2VE7 A;  2VE7 C;  3EAY A;  3VP7 A;  2WE6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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