The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
71
|
sequence length |
221
|
structure length |
221
|
Chain Sequence |
GSLVPELNEKDDDQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| source organism |
Saccharomyces cerevisiae
|
| publication title |
Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast.
pubmed doi rcsb |
| molecule keywords |
ULP1 PROTEASE
|
| total genus |
71
|
| structure length |
221
|
| sequence length |
221
|
| ec nomenclature |
ec
3.4.22.68: Ulp1 peptidase. |
| pdb deposition date | 2000-04-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02902 | Peptidase_C48 | Ulp1 protease family, C-terminal catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Actin-binding Protein, T-fimbrin; domain 1 | Actin-binding Protein, T-fimbrin; domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | TATA-Binding Protein | Ubiquitin-related |
#chains in the Genus database with same CATH superfamily 2HL9 A; 2HL8 A; 1EUV A; 2HKP A; 3EAY A; #chains in the Genus database with same CATH topology 2Y8Q A; 3ASM A; 2WA6 A; 2QRC A; 3KTU A; 3OSM A; 1KFI A; 4Q58 A; 1UEG A; 2D0B A; 1VTL E; 3DPU A; 2E9K A; 1K2Y X; 3SNS A; 1W80 A; 2NOH A; 3KRM A; 2DK9 A; 4Q59 A; 2MJ7 A; 3F10 A; 5JMV D; 2YRN A; 4ROD B; 1QN6 A; 2V9J A; 1UJO A; 3CWU A; 3HS8 A; 2OOX A; 3EAY A; 3TE5 A; 3F7P A; 3HOP A; 5IYD P; 2EYN A; 4EAK A; 2VE7 C; 4EAI A; 3NA5 A; 2FKF A; 3OH6 A; 1RT8 A; 1EUV A; 1PA7 A; 1WJO A; 3HS9 A; 1QTS A; 5J8E A; 1LXT A; 3EIK A; 3PDK A; 3ENC A; 3I3W A; 1PVS A; 3ENO C; 1C9B B; 4Q57 B; 1WKU A; 2VJ0 A; 2D88 A; 3OC3 C; 2HZM A; 5EPC A; 1QN9 A; 2HL8 A; 2H5A X; 2O3O A; 1H67 A; 3CW7 A; 1YTB A; 1T6A A; 3VP7 A; 1QNB A; 2DKD A; 2IV8 A; 2MZ8 A; 4TPS A; 3C04 A; 2EQO A; 1P5D X; 3DPT A; 3OST A; 3JAR M; 4EAJ A; 4WX8 A; 1PZD A; 2DKC A; 2V8Q A; 1KY7 A; 1QNA A; 1KO9 A; 5FMT A; 1WYR A; 1E42 A; 1KYU A; 1Q9U A; 4WZS D; 1P5G X; 1WJW A; 4EDN A; 2YH5 A; 2ZFD B; 1YTF A; 3JAL M; 1C4G A; 2WA5 A; 3HOC A; 2R0O A; 5BMN A; 3REP B; 1DIZ A; 1QTP A; 2VZG B; 1N3C A; 1LWW A; 2VZI B; 5IYC P; 1WYQ A; 4EDL A; 4B0A A; 4EAG A; 5A38 A; 2EYI A; 1QAG A; 2NOI A; 1VOK A; 1AA2 A; 2D87 A; 1KYF A; 1KFQ A; 2G30 A; 1M3H A; 5FMU A; 1HU0 A; 2D0C A; 4EJY A; 5A37 A; 3VN5 A; 4LVR A; 1K35 A; 2EE7 A; 2IGP A; 2WFN A; 1BHD A; 1YQR A; 4B7L A; 4QG5 A; 1XSZ A; 1LWY A; 3JAK M; 2Y8L A; 1UT7 A; 3KMW B; 1MP9 A; 1NGM A; 5HSH A; 3UW2 A; 1SH6 A; 1WYM A; 3RSM A; 5BVR A; 2R8U A; 4EDM A; 1QN7 A; 3I0W A; 1TGH A; 4MRQ A; 1TBA B; 2I5W A; 1YQK A; 1YQL A; 1V5K A; 2H4L X; 2NLV A; 4Q11 A; 3D4V A; 2D86 A; 1JDY A; 4IL8 A; 5BMP A; 2QRE A; 2F7L A; 2QR1 A; 5AN4 A; 1VKL A; 1R4X A; 1QN5 A; 4BJU A; 1QNC A; 1FN7 A; 3BKQ X; 1RM1 A; 2NWV A; 3OCI A; 1JFI C; 1WYP A; 2IV9 A; 2JPI A; 5KL0 A; 1N3A A; 2NOF A; 1TUO A; 1NVP A; 4EJZ A; 2FUV A; 1VKA A; 5F9C A; 3CO1 A; 2QLV A; 4D7R A; 1KY6 A; 1PCZ A; 1AIS A; 4HJH A; 2HKP A; 2HZS A; 1WYN A; 2L3G A; 2LAE A; 2NOZ A; 2FKM X; 1QN3 A; 1PXY A; 1AOA A; 4EAL A; 3CVT A; 3IH7 A; 2JV9 A; 2V92 A; 3F0Z A; 4TXK A; 1WIX A; 2WA7 A; 2OOY A; 1UL7 A; 2DKA A; 1EBM A; 4C7P A; 2VZD A; 3CWS A; 1D3U A; 3N89 A; 2VZC A; 4LVP A; 2NOB A; 1KYD A; 2D85 A; 3TDH A; 2Z0F A; 2EHB D; 1V5S A; 1P5S A; 1M5Q 1; 1NH2 A; 2FGT A; 1VOL B; 1WYL A; 1LWV A; 1P2X A; 3KY9 A; 1CDW A; 2XHI A; 2VE7 A; 1VTO A; 1M3Q A; 1J3M A; 1B9K A; 2K3S A; 2R5X A; 3CVS A; 1C47 A; 5JN5 A; 2JOI A; 2PWW A; 2D89 A; 3FER A; 4D7Q A; 1YQM A; 3I0X A; 3OSE A; 1MPG A; 3HOR A; 2QRD A; 4I8O A; 3CWA A; 1QNE A; 3RPJ A; 2NOL A; 2D0A A; 3OGD A; 3CWT A; 2HL9 A; 4DDP A; 2WDT A; 1TJT A; 3T4N A; 3OLP A; 2WE6 A; 5IYB P; 1MB8 A; 3I6X A; 2NVM A; 4CFF A; 1DXX A; 4TXI A; 2RR8 A; 1SH5 A; 1TBP A; 2YA3 A; 1PCJ X; 4PY5 A; 5A4B A; 1WYO A; 2QJZ A; 1QN8 A; 3OH9 A; 2JHJ A; 2JHN A; 1N39 A; 4ROC B; 2NOE A; 2QJX A; 3ULX A; 4ROE B; 1PCM X; 5L0O A; 3D7Q A; 5A36 A; 3PMG A; 4DUL A; 1UT4 A; 3H1Z A; 1WQA A; 1QN4 A; 3KMU B; 1BKR A; 2K2R A; 2Z8U A; 4WXA A; #chains in the Genus database with same CATH homology 2EQO A; 4LVR A; 5FMT A; 2HL9 A; 2HL8 A; 5FMU A; 1EUV A; 4DDP A; 2IGP A; 2WDT A; 4LVP A; 2HKP A; 2VE7 A; 2VE7 C; 3EAY A; 3VP7 A; 2WE6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
