2HL8A

Sumo protease ulp1 with the catalytic cysteine oxidized to a sulfinic acid
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
221
structure length
218
Chain Sequence
GSLVPELNEKDDDQVQKALASRETQLMNRNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDALK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Saccharomyces cerevisiae
publication title Molecular basis of the redox regulation of SUMO proteases: a protective mechanism of intermolecular disulfide linkage against irreversible sulfhydryl oxidation
pubmed doi rcsb
molecule keywords Ubiquitin-like-specific protease 1
total genus 71
structure length 218
sequence length 221
ec nomenclature ec 3.4.22.68: Ulp1 peptidase.
pdb deposition date 2006-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02902 Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.20 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Actin-binding Protein, T-fimbrin; domain 1 2hl8A01
3.30.310.130 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Ubiquitin-related 2hl8A02
2HL8A 1EUVA 3EAYA 2HL9A 2HKPA
chains in the Genus database with same CATH superfamily
1PCMX 2Y8LA 3TDHA 4BJUA 3CW7A 2QJXA 1PXYA 2RR8A 1QTSA 2NOZA 1SH6A 2NVMA 2YA3A 5J8EA 2OOXA 3N89A 2FUVA 4TPSA 2WDTA 2Y8QA 2O3OA 5A36A 5A4BA 2VZDA 2VZGB 2V9JA 2FGTA 2Z8UA 1WIXA 1TGHA 5IYDP 5IYBP 1K35A 1VTLE 5A37A 2FKMX 2IV9A 1VKAA 1WYLA 1T6AA 1NGMA 1LWWA 3OH6A 2EQOA 1VTOA 3OSMA 2R5XA 3H1ZA 5BMNA 2IGPA 4Q57B 3F7PA 1BKRA 3EAYA 2NLVA 4EJZA 1WJWA 1XSZA 4EAJA 2JOIA 1H67A 1WYQA 1D3UA 2I5WA 2VE7A 4TXIA 2K3SA 2EYNA 4I8OA 1N3AA 3KTUA 1QN6A 3RSMA 4ROCB 1PVSA 2DKDA 2V92A 3BKQX 2NOBA 3ULXA 5FMUA 1YQLA 2WA6A 4RODB 2VE7C 2IV8A 4DULA 1UEGA 2YH5A 2NOHA 3OSEA 1V5KA 2NOEA 4Q11A 1WYOA 1M5Q1 1N3CA 1C9BB 4EALA 5IYCP 1CDWA 2PWWA 2Z0FA 2JHJA 1UT4A 3OCIA 1MPGA 3DPTA 3DPUA 3CWUA 2VJ0A 2WA5A 4EAIA 2WE6A 1QNEA 1QN4A 1QNBA 1J3MA 3F0ZA 3D7QA 2JHNA 4ROEB 1RT8A 3JARM 4PY5A 1Q9UA 2EYIA 1EBMA 3HS9A 4EDLA 3SNSA 2WFNA 1WYRA 1FN7A 1WYPA 3D4VA 1AOAA 1WYNA 3CWAA 3OLPA 1YQRA 2QR1A 2NWVA 1C47A 5A38A 2XHIA 3EIKA 2H5AX 2D0AA 2JPIA 1PZDA 4D7RA 1V5SA 1QN7A 1KY7A 1N39A 1B9KA 3T4NA 1KO9A 1SH5A 2E9KA 1TBPA 3JAKM 3C04A 3CVSA 3KMUB 3CO1A 3I3WA 1TUOA 3F10A 1K2YX 2D87A 2DK9A 3IH7A 3CWSA 2F7LA 1UL7A 1UJOA 1QNCA 1QN3A 1VOLB 2EE7A 3HS8A 2HZMA 2L3GA 4DDPA 4HJHA 1UT7A 1LWYA 3CWTA 1YQMA 2MJ7A 2D85A 2D86A 1KY6A 3RPJA 1M3HA 4WZSD 1QN5A 5JMVD 1YQKA 1DIZA 3I6XA 1KYFA 2D0CA 1M3QA 1P2XA 3I0XA 2DKCA 2HL8A 2D89A 2MZ8A 3JALM 2D0BA 1NH2A 4B7LA 5FMTA 1VOKA 3PDKA 5KL0A 3ASMA 1KYDA 3TE5A 4EAKA 3OH9A 5BVRA 1TBAB 1QN8A 1QN9A 4B0AA 2QRCA 1DXXA 3REPB 4Q59A 2DKAA 1QTPA 1MP9A 2HZSA 1WYMA 1P5GX 4LVPA 3KRMA 2D88A 1AISA 4MRQA 1PCJX 2YRNA 3NA5A 4QG5A 3CVTA 3I0WA 2WA7A 1KFQA 1P5DX 3HORA 5AN4A 3PMGA 2QREA 1BHDA 4CFFA 1MB8A 1KFIA 1VKLA 2ZFDB 1JFIC 1E42A 3OSTA 3VN5A 2HL9A 1WKUA 1TJTA 5F9CA 2FKFA 2R8UA 2VZIB 2LAEA 2R0OA 4LVRA 5BMPA 4WXAA 1RM1A 1QAGA 1WQAA 2QLVA 4EDMA 1NVPA 5L0OA 5JN5A 1KYUA 2H4LX 3HOCA 2EHBD 3VP7A 4IL8A 3FERA 4EJYA 4TXKA 1AA2A 4D7QA 3HOPA 2QRDA 1PCZA 1EUVA 1HU0A 1JDYA 3ENOC 1QNAA 1R4XA 2OOYA 4WX8A 1W80A 1YTFA 2NOIA 1P5SA 2HKPA 1C4GA 5HSHA 3OC3C 3UW2A 4EAGA 3KY9A 2JV9A 2K2RA 3KMWB 2V8QA 4EDNA 1YTBA 1PA7A 2QJZA 2NOLA 2G30A 1WJOA 5EPCA 3OGDA 4Q58A 3ENCA 1LXTA 4C7PA 1LWVA 2NOFA 2VZCA
chains in the Genus database with same CATH topology
2IGPA 2EQOA 2HL8A 2WDTA 4LVPA 3VP7A 1EUVA 2VE7C 3EAYA 2WE6A 5FMTA 2VE7A 5FMUA 4DDPA 2HL9A 2HKPA 4LVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HL8 A;  1EUV A;  3EAY A;  2HL9 A;  2HKP A; 
#chains in the Genus database with same CATH topology
 1PCM X;  2Y8L A;  3TDH A;  4BJU A;  3CW7 A;  2QJX A;  1PXY A;  2RR8 A;  1QTS A;  2NOZ A;  1SH6 A;  2NVM A;  2YA3 A;  5J8E A;  2OOX A;  3N89 A;  2FUV A;  4TPS A;  2WDT A;  2Y8Q A;  2O3O A;  5A36 A;  5A4B A;  2VZD A;  2VZG B;  2V9J A;  2FGT A;  2Z8U A;  1WIX A;  1TGH A;  5IYD P;  5IYB P;  1K35 A;  1VTL E;  5A37 A;  2FKM X;  2IV9 A;  1VKA A;  1WYL A;  1T6A A;  1NGM A;  1LWW A;  3OH6 A;  2EQO A;  1VTO A;  3OSM A;  2R5X A;  3H1Z A;  5BMN A;  2IGP A;  4Q57 B;  3F7P A;  1BKR A;  3EAY A;  2NLV A;  4EJZ A;  1WJW A;  1XSZ A;  4EAJ A;  2JOI A;  1H67 A;  1WYQ A;  1D3U A;  2I5W A;  2VE7 A;  4TXI A;  2K3S A;  2EYN A;  4I8O A;  1N3A A;  3KTU A;  1QN6 A;  3RSM A;  4ROC B;  1PVS A;  2DKD A;  2V92 A;  3BKQ X;  2NOB A;  3ULX A;  5FMU A;  1YQL A;  2WA6 A;  4ROD B;  2VE7 C;  2IV8 A;  4DUL A;  1UEG A;  2YH5 A;  2NOH A;  3OSE A;  1V5K A;  2NOE A;  4Q11 A;  1WYO A;  1M5Q 1;  1N3C A;  1C9B B;  4EAL A;  5IYC P;  1CDW A;  2PWW A;  2Z0F A;  2JHJ A;  1UT4 A;  3OCI A;  1MPG A;  3DPT A;  3DPU A;  3CWU A;  2VJ0 A;  2WA5 A;  4EAI A;  2WE6 A;  1QNE A;  1QN4 A;  1QNB A;  1J3M A;  3F0Z A;  3D7Q A;  2JHN A;  4ROE B;  1RT8 A;  3JAR M;  4PY5 A;  1Q9U A;  2EYI A;  1EBM A;  3HS9 A;  4EDL A;  3SNS A;  2WFN A;  1WYR A;  1FN7 A;  1WYP A;  3D4V A;  1AOA A;  1WYN A;  3CWA A;  3OLP A;  1YQR A;  2QR1 A;  2NWV A;  1C47 A;  5A38 A;  2XHI A;  3EIK A;  2H5A X;  2D0A A;  2JPI A;  1PZD A;  4D7R A;  1V5S A;  1QN7 A;  1KY7 A;  1N39 A;  1B9K A;  3T4N A;  1KO9 A;  1SH5 A;  2E9K A;  1TBP A;  3JAK M;  3C04 A;  3CVS A;  3KMU B;  3CO1 A;  3I3W A;  1TUO A;  3F10 A;  1K2Y X;  2D87 A;  2DK9 A;  3IH7 A;  3CWS A;  2F7L A;  1UL7 A;  1UJO A;  1QNC A;  1QN3 A;  1VOL B;  2EE7 A;  3HS8 A;  2HZM A;  2L3G A;  4DDP A;  4HJH A;  1UT7 A;  1LWY A;  3CWT A;  1YQM A;  2MJ7 A;  2D85 A;  2D86 A;  1KY6 A;  3RPJ A;  1M3H A;  4WZS D;  1QN5 A;  5JMV D;  1YQK A;  1DIZ A;  3I6X A;  1KYF A;  2D0C A;  1M3Q A;  1P2X A;  3I0X A;  2DKC A;  2HL8 A;  2D89 A;  2MZ8 A;  3JAL M;  2D0B A;  1NH2 A;  4B7L A;  5FMT A;  1VOK A;  3PDK A;  5KL0 A;  3ASM A;  1KYD A;  3TE5 A;  4EAK A;  3OH9 A;  5BVR A;  1TBA B;  1QN8 A;  1QN9 A;  4B0A A;  2QRC A;  1DXX A;  3REP B;  4Q59 A;  2DKA A;  1QTP A;  1MP9 A;  2HZS A;  1WYM A;  1P5G X;  4LVP A;  3KRM A;  2D88 A;  1AIS A;  4MRQ A;  1PCJ X;  2YRN A;  3NA5 A;  4QG5 A;  3CVT A;  3I0W A;  2WA7 A;  1KFQ A;  1P5D X;  3HOR A;  5AN4 A;  3PMG A;  2QRE A;  1BHD A;  4CFF A;  1MB8 A;  1KFI A;  1VKL A;  2ZFD B;  1JFI C;  1E42 A;  3OST A;  3VN5 A;  2HL9 A;  1WKU A;  1TJT A;  5F9C A;  2FKF A;  2R8U A;  2VZI B;  2LAE A;  2R0O A;  4LVR A;  5BMP A;  4WXA A;  1RM1 A;  1QAG A;  1WQA A;  2QLV A;  4EDM A;  1NVP A;  5L0O A;  5JN5 A;  1KYU A;  2H4L X;  3HOC A;  2EHB D;  3VP7 A;  4IL8 A;  3FER A;  4EJY A;  4TXK A;  1AA2 A;  4D7Q A;  3HOP A;  2QRD A;  1PCZ A;  1EUV A;  1HU0 A;  1JDY A;  3ENO C;  1QNA A;  1R4X A;  2OOY A;  4WX8 A;  1W80 A;  1YTF A;  2NOI A;  1P5S A;  2HKP A;  1C4G A;  5HSH A;  3OC3 C;  3UW2 A;  4EAG A;  3KY9 A;  2JV9 A;  2K2R A;  3KMW B;  2V8Q A;  4EDN A;  1YTB A;  1PA7 A;  2QJZ A;  2NOL A;  2G30 A;  1WJO A;  5EPC A;  3OGD A;  4Q58 A;  3ENC A;  1LXT A;  4C7P A;  1LWV A;  2NOF A;  2VZC A; 
#chains in the Genus database with same CATH homology
 2IGP A;  2EQO A;  2HL8 A;  2WDT A;  4LVP A;  3VP7 A;  1EUV A;  2VE7 C;  3EAY A;  2WE6 A;  5FMT A;  2VE7 A;  5FMU A;  4DDP A;  2HL9 A;  2HKP A;  4LVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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