1BHDA

Second calponin homology domain from utrophin
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
108
structure length
108
Chain Sequence
LQQTNSEKILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
source organism Homo sapiens
publication title The 2.0 A structure of the second calponin homology domain from the actin-binding region of the dystrophin homologue utrophin.
pubmed doi rcsb
molecule keywords UTROPHIN
total genus 40
structure length 108
sequence length 108
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-06-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1bhdA00
2VZCA 2VZIB 2D89A 1V5KA 3HOCA 1P2XA 2YRNA 1WJOA 1P5SA 1AOAA 1RT8A 2D85A 2E9KA 3JARM 2D86A 1WIXA 2QJZA 1MB8A 5BVRA 1H67A 2EYIA 1DXXA 1SH6A 3I6XA 2EE7A 5A36A 1AA2A 2QJXA 1WYMA 2JV9A 4TXKA 5L0OA 2EYNA 4EDMA 4EDNA 5A4BA 2VZDA 3KMWB 4Q59A 3REPB 1UEGA 1TJTA 2WA5A 5A37A 1UJOA 2K2RA 1VKAA 2L3GA 5A38A 3HORA 2D87A 2DK9A 3KY9A 1SH5A 3JALM 4Q57B 1WYLA 2WA7A 1WYQA 1QAGA 1BHDA 1BKRA 1PA7A 1WKUA 2WFNA 2K3SA 4Q58A 2RR8A 2R0OA 4EDLA 2R8UA 2D88A 5J8EA 3F7PA 4B7LA 3KMUB 1WYOA 3HOPA 4TXIA 2WA6A 3CO1A 3JAKM 1WYPA 1PXYA 1WYRA 2VZGB 3FERA 1WYNA
chains in the Genus database with same CATH superfamily
2VZCA 2VZIB 2D89A 1V5KA 3HOCA 1P2XA 2YRNA 1WJOA 1EUVA 2HL9A 1P5SA 1AOAA 1RT8A 4DDPA 2VE7A 2D85A 2E9KA 3JARM 2D86A 1WIXA 2QJZA 1MB8A 5BVRA 1H67A 2EYIA 1DXXA 1SH6A 3I6XA 2EE7A 5A36A 2HL8A 1AA2A 2QJXA 1WYMA 2JV9A 4TXKA 5L0OA 2EYNA 4EDMA 2WE6A 4EDNA 5A4BA 2VZDA 3KMWB 5FMUA 4Q59A 3REPB 1UEGA 1TJTA 2WA5A 5A37A 1UJOA 2K2RA 1VKAA 2L3GA 5A38A 3HORA 2D87A 2DK9A 3KY9A 1SH5A 3VP7A 3JALM 4Q57B 1WYLA 2WA7A 1WYQA 1QAGA 4LVPA 1BHDA 2IGPA 1BKRA 1PA7A 5FMTA 1WKUA 2WFNA 2K3SA 4Q58A 2RR8A 2R0OA 2EQOA 4EDLA 2R8UA 2VE7C 2D88A 5J8EA 3F7PA 4B7LA 3KMUB 1WYOA 3HOPA 2HKPA 4TXIA 2WA6A 3CO1A 2WDTA 3JAKM 3EAYA 1WYPA 1PXYA 4LVRA 1WYRA 2VZGB 3FERA 1WYNA
chains in the Genus database with same CATH topology
2VZCA 2VZIB 2D89A 1V5KA 3HOCA 1P2XA 2YRNA 1WJOA 1P5SA 1AOAA 1RT8A 2D85A 2E9KA 3JARM 2D86A 1WIXA 2QJZA 1MB8A 5BVRA 1H67A 2EYIA 1DXXA 1SH6A 3I6XA 2EE7A 5A36A 1AA2A 2QJXA 1WYMA 2JV9A 4TXKA 5L0OA 2EYNA 4EDMA 4EDNA 5A4BA 2VZDA 3KMWB 4Q59A 3REPB 1UEGA 1TJTA 2WA5A 5A37A 1UJOA 2K2RA 1VKAA 2L3GA 5A38A 3HORA 2D87A 2DK9A 3KY9A 1SH5A 3JALM 4Q57B 1WYLA 2WA7A 1WYQA 1QAGA 1BHDA 1BKRA 1PA7A 1WKUA 2WFNA 2K3SA 4Q58A 2RR8A 2R0OA 4EDLA 2R8UA 2D88A 5J8EA 3F7PA 4B7LA 3KMUB 1WYOA 3HOPA 4TXIA 2WA6A 3CO1A 3JAKM 1WYPA 1PXYA 1WYRA 2VZGB 3FERA 1WYNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VZC A;  2VZI B;  2D89 A;  1V5K A;  3HOC A;  1P2X A;  2YRN A;  1WJO A;  1P5S A;  1AOA A;  1RT8 A;  2D85 A;  2E9K A;  3JAR M;  2D86 A;  1WIX A;  2QJZ A;  1MB8 A;  5BVR A;  1H67 A;  2EYI A;  1DXX A;  1SH6 A;  3I6X A;  2EE7 A;  5A36 A;  1AA2 A;  2QJX A;  1WYM A;  2JV9 A;  4TXK A;  5L0O A;  2EYN A;  4EDM A;  4EDN A;  5A4B A;  2VZD A;  3KMW B;  4Q59 A;  3REP B;  1UEG A;  1TJT A;  2WA5 A;  5A37 A;  1UJO A;  2K2R A;  1VKA A;  2L3G A;  5A38 A;  3HOR A;  2D87 A;  2DK9 A;  3KY9 A;  1SH5 A;  3JAL M;  4Q57 B;  1WYL A;  2WA7 A;  1WYQ A;  1QAG A;  1BHD A;  1BKR A;  1PA7 A;  1WKU A;  2WFN A;  2K3S A;  4Q58 A;  2RR8 A;  2R0O A;  4EDL A;  2R8U A;  2D88 A;  5J8E A;  3F7P A;  4B7L A;  3KMU B;  1WYO A;  3HOP A;  4TXI A;  2WA6 A;  3CO1 A;  3JAK M;  1WYP A;  1PXY A;  1WYR A;  2VZG B;  3FER A;  1WYN A; 
#chains in the Genus database with same CATH topology
 2VZC A;  2VZI B;  2D89 A;  1V5K A;  3HOC A;  1P2X A;  2YRN A;  1WJO A;  1EUV A;  2HL9 A;  1P5S A;  1AOA A;  1RT8 A;  4DDP A;  2VE7 A;  2D85 A;  2E9K A;  3JAR M;  2D86 A;  1WIX A;  2QJZ A;  1MB8 A;  5BVR A;  1H67 A;  2EYI A;  1DXX A;  1SH6 A;  3I6X A;  2EE7 A;  5A36 A;  2HL8 A;  1AA2 A;  2QJX A;  1WYM A;  2JV9 A;  4TXK A;  5L0O A;  2EYN A;  4EDM A;  2WE6 A;  4EDN A;  5A4B A;  2VZD A;  3KMW B;  5FMU A;  4Q59 A;  3REP B;  1UEG A;  1TJT A;  2WA5 A;  5A37 A;  1UJO A;  2K2R A;  1VKA A;  2L3G A;  5A38 A;  3HOR A;  2D87 A;  2DK9 A;  3KY9 A;  1SH5 A;  3VP7 A;  3JAL M;  4Q57 B;  1WYL A;  2WA7 A;  1WYQ A;  1QAG A;  4LVP A;  1BHD A;  2IGP A;  1BKR A;  1PA7 A;  5FMT A;  1WKU A;  2WFN A;  2K3S A;  4Q58 A;  2RR8 A;  2R0O A;  2EQO A;  4EDL A;  2R8U A;  2VE7 C;  2D88 A;  5J8E A;  3F7P A;  4B7L A;  3KMU B;  1WYO A;  3HOP A;  2HKP A;  4TXI A;  2WA6 A;  3CO1 A;  2WDT A;  3JAK M;  3EAY A;  1WYP A;  1PXY A;  4LVR A;  1WYR A;  2VZG B;  3FER A;  1WYN A; 
#chains in the Genus database with same CATH homology
 2VZC A;  2VZI B;  2D89 A;  1V5K A;  3HOC A;  1P2X A;  2YRN A;  1WJO A;  1P5S A;  1AOA A;  1RT8 A;  2D85 A;  2E9K A;  3JAR M;  2D86 A;  1WIX A;  2QJZ A;  1MB8 A;  5BVR A;  1H67 A;  2EYI A;  1DXX A;  1SH6 A;  3I6X A;  2EE7 A;  5A36 A;  1AA2 A;  2QJX A;  1WYM A;  2JV9 A;  4TXK A;  5L0O A;  2EYN A;  4EDM A;  4EDN A;  5A4B A;  2VZD A;  3KMW B;  4Q59 A;  3REP B;  1UEG A;  1TJT A;  2WA5 A;  5A37 A;  1UJO A;  2K2R A;  1VKA A;  2L3G A;  5A38 A;  3HOR A;  2D87 A;  2DK9 A;  3KY9 A;  1SH5 A;  3JAL M;  4Q57 B;  1WYL A;  2WA7 A;  1WYQ A;  1QAG A;  1BHD A;  1BKR A;  1PA7 A;  1WKU A;  2WFN A;  2K3S A;  4Q58 A;  2RR8 A;  2R0O A;  4EDL A;  2R8U A;  2D88 A;  5J8E A;  3F7P A;  4B7L A;  3KMU B;  1WYO A;  3HOP A;  4TXI A;  2WA6 A;  3CO1 A;  3JAK M;  1WYP A;  1PXY A;  1WYR A;  2VZG B;  3FER A;  1WYN A; 
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