1P2XA

Crystal structure of the calponin-homology domain of rng2 from schizosaccharomyces pombe
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
159
structure length
159
Chain Sequence
RETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILPNFKAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure, crystal packing and molecular dynamics of the calponin-homology domain of Schizosaccharomyces pombe Rng2.
pubmed doi rcsb
molecule tags Protein binding
source organism Schizosaccharomyces pombe
molecule keywords Ras GTPase-activating-like protein
total genus 56
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2003-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1p2xA00
4TXKA 4Q57B 4TXIA 1V5KA 1SH6A 2DK9A 2VZIB 2QJZA 1WYNA 1UEGA 2RR8A 1QAGA 5J8EA 1WKUA 3HORA 4EDNA 5A4BA 1MB8A 2D86A 1BKRA 1SH5A 3JAKM 1WYPA 2D89A 3F7PA 2VZDA 4EDLA 2D87A 2EYNA 3HOPA 1WJOA 1WIXA 1WYRA 2JV9A 5A36A 1P5SA 2D85A 1AA2A 1PXYA 2EYIA 2L3GA 2WA6A 3HOCA 1VKAA 4Q59A 2WFNA 4EDMA 1DXXA 2EE7A 3KMUB 3I6XA 3KY9A 3JALM 1P2XA 3FERA 2K3SA 2YRNA 3KMWB 1PA7A 2VZGB 4B7LA 1BHDA 1WYLA 1WYMA 2WA7A 2R8UA 2E9KA 2VZCA 1RT8A 1UJOA 1WYOA 4Q58A 2WA5A 1H67A 2K2RA 5BVRA 5A38A 2D88A 1AOAA 1WYQA 3CO1A 3REPB 5A37A 5L0OA 2R0OA 2QJXA 3JARM 1TJTA
chains in the Genus database with same CATH superfamily
4TXKA 5FMTA 4Q57B 4TXIA 1V5KA 1SH6A 2DK9A 2HL9A 2HL8A 4LVPA 2VZIB 2QJZA 2WDTA 1WYNA 1UEGA 2WE6A 2EQOA 2RR8A 1QAGA 5J8EA 1WKUA 5FMUA 3HORA 4EDNA 5A4BA 1MB8A 2D86A 3VP7A 1BKRA 1SH5A 3JAKM 2HKPA 1WYPA 2D89A 3F7PA 2VZDA 4EDLA 2D87A 2EYNA 3HOPA 1WJOA 1WIXA 1WYRA 2JV9A 2VE7C 5A36A 1P5SA 2D85A 1AA2A 1PXYA 2EYIA 2L3GA 2WA6A 3HOCA 1VKAA 4Q59A 2WFNA 4EDMA 1DXXA 2EE7A 3KMUB 3I6XA 3KY9A 3JALM 1P2XA 3FERA 2K3SA 4DDPA 2YRNA 3KMWB 1PA7A 2VZGB 2VE7A 4B7LA 1BHDA 1WYLA 2IGPA 1WYMA 2WA7A 2R8UA 2E9KA 2VZCA 1RT8A 1UJOA 1WYOA 4Q58A 2WA5A 1H67A 2K2RA 5BVRA 5A38A 1EUVA 2D88A 4LVRA 1AOAA 1WYQA 3CO1A 3REPB 3EAYA 5A37A 5L0OA 2R0OA 2QJXA 3JARM 1TJTA
chains in the Genus database with same CATH topology
4TXKA 4Q57B 4TXIA 1V5KA 1SH6A 2DK9A 2VZIB 2QJZA 1WYNA 1UEGA 2RR8A 1QAGA 5J8EA 1WKUA 3HORA 4EDNA 5A4BA 1MB8A 2D86A 1BKRA 1SH5A 3JAKM 1WYPA 2D89A 3F7PA 2VZDA 4EDLA 2D87A 2EYNA 3HOPA 1WJOA 1WIXA 1WYRA 2JV9A 5A36A 1P5SA 2D85A 1AA2A 1PXYA 2EYIA 2L3GA 2WA6A 3HOCA 1VKAA 4Q59A 2WFNA 4EDMA 1DXXA 2EE7A 3KMUB 3I6XA 3KY9A 3JALM 1P2XA 3FERA 2K3SA 2YRNA 3KMWB 1PA7A 2VZGB 4B7LA 1BHDA 1WYLA 1WYMA 2WA7A 2R8UA 2E9KA 2VZCA 1RT8A 1UJOA 1WYOA 4Q58A 2WA5A 1H67A 2K2RA 5BVRA 5A38A 2D88A 1AOAA 1WYQA 3CO1A 3REPB 5A37A 5L0OA 2R0OA 2QJXA 3JARM 1TJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TXK A;  4Q57 B;  4TXI A;  1V5K A;  1SH6 A;  2DK9 A;  2VZI B;  2QJZ A;  1WYN A;  1UEG A;  2RR8 A;  1QAG A;  5J8E A;  1WKU A;  3HOR A;  4EDN A;  5A4B A;  1MB8 A;  2D86 A;  1BKR A;  1SH5 A;  3JAK M;  1WYP A;  2D89 A;  3F7P A;  2VZD A;  4EDL A;  2D87 A;  2EYN A;  3HOP A;  1WJO A;  1WIX A;  1WYR A;  2JV9 A;  5A36 A;  1P5S A;  2D85 A;  1AA2 A;  1PXY A;  2EYI A;  2L3G A;  2WA6 A;  3HOC A;  1VKA A;  4Q59 A;  2WFN A;  4EDM A;  1DXX A;  2EE7 A;  3KMU B;  3I6X A;  3KY9 A;  3JAL M;  1P2X A;  3FER A;  2K3S A;  2YRN A;  3KMW B;  1PA7 A;  2VZG B;  4B7L A;  1BHD A;  1WYL A;  1WYM A;  2WA7 A;  2R8U A;  2E9K A;  2VZC A;  1RT8 A;  1UJO A;  1WYO A;  4Q58 A;  2WA5 A;  1H67 A;  2K2R A;  5BVR A;  5A38 A;  2D88 A;  1AOA A;  1WYQ A;  3CO1 A;  3REP B;  5A37 A;  5L0O A;  2R0O A;  2QJX A;  3JAR M;  1TJT A; 
#chains in the Genus database with same CATH topology
 4TXK A;  5FMT A;  4Q57 B;  4TXI A;  1V5K A;  1SH6 A;  2DK9 A;  2HL9 A;  2HL8 A;  4LVP A;  2VZI B;  2QJZ A;  2WDT A;  1WYN A;  1UEG A;  2WE6 A;  2EQO A;  2RR8 A;  1QAG A;  5J8E A;  1WKU A;  5FMU A;  3HOR A;  4EDN A;  5A4B A;  1MB8 A;  2D86 A;  3VP7 A;  1BKR A;  1SH5 A;  3JAK M;  2HKP A;  1WYP A;  2D89 A;  3F7P A;  2VZD A;  4EDL A;  2D87 A;  2EYN A;  3HOP A;  1WJO A;  1WIX A;  1WYR A;  2JV9 A;  2VE7 C;  5A36 A;  1P5S A;  2D85 A;  1AA2 A;  1PXY A;  2EYI A;  2L3G A;  2WA6 A;  3HOC A;  1VKA A;  4Q59 A;  2WFN A;  4EDM A;  1DXX A;  2EE7 A;  3KMU B;  3I6X A;  3KY9 A;  3JAL M;  1P2X A;  3FER A;  2K3S A;  4DDP A;  2YRN A;  3KMW B;  1PA7 A;  2VZG B;  2VE7 A;  4B7L A;  1BHD A;  1WYL A;  2IGP A;  1WYM A;  2WA7 A;  2R8U A;  2E9K A;  2VZC A;  1RT8 A;  1UJO A;  1WYO A;  4Q58 A;  2WA5 A;  1H67 A;  2K2R A;  5BVR A;  5A38 A;  1EUV A;  2D88 A;  4LVR A;  1AOA A;  1WYQ A;  3CO1 A;  3REP B;  3EAY A;  5A37 A;  5L0O A;  2R0O A;  2QJX A;  3JAR M;  1TJT A; 
#chains in the Genus database with same CATH homology
 4TXK A;  4Q57 B;  4TXI A;  1V5K A;  1SH6 A;  2DK9 A;  2VZI B;  2QJZ A;  1WYN A;  1UEG A;  2RR8 A;  1QAG A;  5J8E A;  1WKU A;  3HOR A;  4EDN A;  5A4B A;  1MB8 A;  2D86 A;  1BKR A;  1SH5 A;  3JAK M;  1WYP A;  2D89 A;  3F7P A;  2VZD A;  4EDL A;  2D87 A;  2EYN A;  3HOP A;  1WJO A;  1WIX A;  1WYR A;  2JV9 A;  5A36 A;  1P5S A;  2D85 A;  1AA2 A;  1PXY A;  2EYI A;  2L3G A;  2WA6 A;  3HOC A;  1VKA A;  4Q59 A;  2WFN A;  4EDM A;  1DXX A;  2EE7 A;  3KMU B;  3I6X A;  3KY9 A;  3JAL M;  1P2X A;  3FER A;  2K3S A;  2YRN A;  3KMW B;  1PA7 A;  2VZG B;  4B7L A;  1BHD A;  1WYL A;  1WYM A;  2WA7 A;  2R8U A;  2E9K A;  2VZC A;  1RT8 A;  1UJO A;  1WYO A;  4Q58 A;  2WA5 A;  1H67 A;  2K2R A;  5BVR A;  5A38 A;  2D88 A;  1AOA A;  1WYQ A;  3CO1 A;  3REP B;  5A37 A;  5L0O A;  2R0O A;  2QJX A;  3JAR M;  1TJT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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