1P2XA

Crystal structure of the calponin-homology domain of rng2 from schizosaccharomyces pombe
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
159
structure length
159
Chain Sequence
RETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILPNFKAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure, crystal packing and molecular dynamics of the calponin-homology domain of Schizosaccharomyces pombe Rng2.
pubmed doi rcsb
molecule tags Protein binding
source organism Schizosaccharomyces pombe
molecule keywords Ras GTPase-activating-like protein
total genus 56
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2003-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1p2xA00
1P2XA 2D89A 2R8UA 3KY9A 1SH6A 2VZIB 1WYPA 3CO1A 1DXXA 2EE7A 4Q58A 1WYMA 3HOCA 1MB8A 2VZGB 4TXKA 2K3SA 3KMWB 5J8EA 1WYQA 5A37A 1TJTA 2JV9A 5A4BA 1WYRA 3I6XA 1WYLA 3JARM 4TXIA 3JAKM 1AOAA 1WIXA 5A36A 3JALM 4EDMA 2D86A 1P5SA 1BHDA 2EYIA 1AA2A 1SH5A 2WA7A 1V5KA 1WYNA 4Q57B 2RR8A 2DK9A 1WKUA 2YRNA 2WFNA 3FERA 1RT8A 4Q59A 1BKRA 1UJOA 2D85A 2E9KA 1PXYA 3KMUB 5A38A 1WJOA 2WA6A 5BVRA 5L0OA 1UEGA 2K2RA 2EYNA 2VZDA 2D88A 3HOPA 1WYOA 3F7PA 4B7LA 1PA7A 3HORA 2L3GA 3REPB 2VZCA 2WA5A 2QJXA 2R0OA 4EDNA 1H67A 1QAGA 4EDLA 2D87A 2QJZA 1VKAA
chains in the Genus database with same CATH superfamily
1P2XA 2D89A 2HL9A 2R8UA 2IGPA 3KY9A 1SH6A 2VZIB 1WYPA 3CO1A 1DXXA 2EE7A 4Q58A 1WYMA 3HOCA 1MB8A 2VZGB 4TXKA 2K3SA 3KMWB 5J8EA 1EUVA 1WYQA 2HKPA 5A37A 1TJTA 2JV9A 5A4BA 1WYRA 3I6XA 1WYLA 3JARM 4TXIA 3JAKM 1AOAA 1WIXA 4LVRA 5A36A 3JALM 4EDMA 2WE6A 2D86A 1P5SA 1BHDA 2EYIA 1AA2A 3EAYA 1SH5A 2VE7C 2WA7A 1V5KA 1WYNA 4Q57B 2RR8A 2VE7A 2DK9A 1WKUA 2YRNA 2WFNA 3FERA 1RT8A 2EQOA 4Q59A 3VP7A 1BKRA 1UJOA 2D85A 2E9KA 4DDPA 1PXYA 3KMUB 5A38A 1WJOA 5FMUA 2WA6A 5BVRA 5L0OA 5FMTA 1UEGA 2K2RA 2EYNA 2VZDA 2D88A 3HOPA 1WYOA 3F7PA 4B7LA 1PA7A 3HORA 2WDTA 2L3GA 3REPB 2VZCA 2WA5A 2QJXA 2HL8A 2R0OA 4LVPA 4EDNA 1H67A 1QAGA 4EDLA 2D87A 2QJZA 1VKAA
chains in the Genus database with same CATH topology
1P2XA 2D89A 2R8UA 3KY9A 1SH6A 2VZIB 1WYPA 3CO1A 1DXXA 2EE7A 4Q58A 1WYMA 3HOCA 1MB8A 2VZGB 4TXKA 2K3SA 3KMWB 5J8EA 1WYQA 5A37A 1TJTA 2JV9A 5A4BA 1WYRA 3I6XA 1WYLA 3JARM 4TXIA 3JAKM 1AOAA 1WIXA 5A36A 3JALM 4EDMA 2D86A 1P5SA 1BHDA 2EYIA 1AA2A 1SH5A 2WA7A 1V5KA 1WYNA 4Q57B 2RR8A 2DK9A 1WKUA 2YRNA 2WFNA 3FERA 1RT8A 4Q59A 1BKRA 1UJOA 2D85A 2E9KA 1PXYA 3KMUB 5A38A 1WJOA 2WA6A 5BVRA 5L0OA 1UEGA 2K2RA 2EYNA 2VZDA 2D88A 3HOPA 1WYOA 3F7PA 4B7LA 1PA7A 3HORA 2L3GA 3REPB 2VZCA 2WA5A 2QJXA 2R0OA 4EDNA 1H67A 1QAGA 4EDLA 2D87A 2QJZA 1VKAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1P2X A;  2D89 A;  2R8U A;  3KY9 A;  1SH6 A;  2VZI B;  1WYP A;  3CO1 A;  1DXX A;  2EE7 A;  4Q58 A;  1WYM A;  3HOC A;  1MB8 A;  2VZG B;  4TXK A;  2K3S A;  3KMW B;  5J8E A;  1WYQ A;  5A37 A;  1TJT A;  2JV9 A;  5A4B A;  1WYR A;  3I6X A;  1WYL A;  3JAR M;  4TXI A;  3JAK M;  1AOA A;  1WIX A;  5A36 A;  3JAL M;  4EDM A;  2D86 A;  1P5S A;  1BHD A;  2EYI A;  1AA2 A;  1SH5 A;  2WA7 A;  1V5K A;  1WYN A;  4Q57 B;  2RR8 A;  2DK9 A;  1WKU A;  2YRN A;  2WFN A;  3FER A;  1RT8 A;  4Q59 A;  1BKR A;  1UJO A;  2D85 A;  2E9K A;  1PXY A;  3KMU B;  5A38 A;  1WJO A;  2WA6 A;  5BVR A;  5L0O A;  1UEG A;  2K2R A;  2EYN A;  2VZD A;  2D88 A;  3HOP A;  1WYO A;  3F7P A;  4B7L A;  1PA7 A;  3HOR A;  2L3G A;  3REP B;  2VZC A;  2WA5 A;  2QJX A;  2R0O A;  4EDN A;  1H67 A;  1QAG A;  4EDL A;  2D87 A;  2QJZ A;  1VKA A; 
#chains in the Genus database with same CATH topology
 1P2X A;  2D89 A;  2HL9 A;  2R8U A;  2IGP A;  3KY9 A;  1SH6 A;  2VZI B;  1WYP A;  3CO1 A;  1DXX A;  2EE7 A;  4Q58 A;  1WYM A;  3HOC A;  1MB8 A;  2VZG B;  4TXK A;  2K3S A;  3KMW B;  5J8E A;  1EUV A;  1WYQ A;  2HKP A;  5A37 A;  1TJT A;  2JV9 A;  5A4B A;  1WYR A;  3I6X A;  1WYL A;  3JAR M;  4TXI A;  3JAK M;  1AOA A;  1WIX A;  4LVR A;  5A36 A;  3JAL M;  4EDM A;  2WE6 A;  2D86 A;  1P5S A;  1BHD A;  2EYI A;  1AA2 A;  3EAY A;  1SH5 A;  2VE7 C;  2WA7 A;  1V5K A;  1WYN A;  4Q57 B;  2RR8 A;  2VE7 A;  2DK9 A;  1WKU A;  2YRN A;  2WFN A;  3FER A;  1RT8 A;  2EQO A;  4Q59 A;  3VP7 A;  1BKR A;  1UJO A;  2D85 A;  2E9K A;  4DDP A;  1PXY A;  3KMU B;  5A38 A;  1WJO A;  5FMU A;  2WA6 A;  5BVR A;  5L0O A;  5FMT A;  1UEG A;  2K2R A;  2EYN A;  2VZD A;  2D88 A;  3HOP A;  1WYO A;  3F7P A;  4B7L A;  1PA7 A;  3HOR A;  2WDT A;  2L3G A;  3REP B;  2VZC A;  2WA5 A;  2QJX A;  2HL8 A;  2R0O A;  4LVP A;  4EDN A;  1H67 A;  1QAG A;  4EDL A;  2D87 A;  2QJZ A;  1VKA A; 
#chains in the Genus database with same CATH homology
 1P2X A;  2D89 A;  2R8U A;  3KY9 A;  1SH6 A;  2VZI B;  1WYP A;  3CO1 A;  1DXX A;  2EE7 A;  4Q58 A;  1WYM A;  3HOC A;  1MB8 A;  2VZG B;  4TXK A;  2K3S A;  3KMW B;  5J8E A;  1WYQ A;  5A37 A;  1TJT A;  2JV9 A;  5A4B A;  1WYR A;  3I6X A;  1WYL A;  3JAR M;  4TXI A;  3JAK M;  1AOA A;  1WIX A;  5A36 A;  3JAL M;  4EDM A;  2D86 A;  1P5S A;  1BHD A;  2EYI A;  1AA2 A;  1SH5 A;  2WA7 A;  1V5K A;  1WYN A;  4Q57 B;  2RR8 A;  2DK9 A;  1WKU A;  2YRN A;  2WFN A;  3FER A;  1RT8 A;  4Q59 A;  1BKR A;  1UJO A;  2D85 A;  2E9K A;  1PXY A;  3KMU B;  5A38 A;  1WJO A;  2WA6 A;  5BVR A;  5L0O A;  1UEG A;  2K2R A;  2EYN A;  2VZD A;  2D88 A;  3HOP A;  1WYO A;  3F7P A;  4B7L A;  1PA7 A;  3HOR A;  2L3G A;  3REP B;  2VZC A;  2WA5 A;  2QJX A;  2R0O A;  4EDN A;  1H67 A;  1QAG A;  4EDL A;  2D87 A;  2QJZ A;  1VKA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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