1P5SA

Structure and function of the calponin-homology domain of an iqgap protein from schizosaccharomyces pombe
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
159
structure length
159
Chain Sequence
RETLQAYDYLCRVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIKSDENLSFTDEDVSIIVRRLRQSNVILPNFKAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (130-133)AH1 (33-55)AH5 (133-150)TI1 (69-72)3H1 (62-64)3H2 (66-69)AH2 (73-82)TIV1 (93-96)AH3 (100-114)3H3 (118-120)AH4 (124-129)TIV3 (151-154)TI2 (83-86)Updating...
connected with : NaN
molecule tags Cytokine
source organism Schizosaccharomyces pombe
publication title Structure, crystal packing and molecular dynamics of the calponin-homology domain of Schizosaccharomyces pombe Rng2.
pubmed doi rcsb
molecule keywords Ras GTPase-activating-like protein rng2
total genus 53
structure length 159
sequence length 159
ec nomenclature
pdb deposition date 2003-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1p5sA00
4B7LA 2D85A 5A38A 1AA2A 2QJXA 1WYNA 2D86A 1WIXA 1WJOA 2WFNA 3HOCA 2WA5A 2R8UA 5L0OA 3REPB 1DXXA 2L3GA 1V5KA 2R0OA 5J8EA 3CO1A 1BKRA 1UEGA 1BHDA 4EDLA 5A37A 2VZCA 3FERA 3KMUB 3HORA 2K2RA 2D88A 1MB8A 5A4BA 2QJZA 2RR8A 2EYIA 4TXIA 1TJTA 1P5SA 1WYLA 1UJOA 2EE7A 2E9KA 2VZGB 3KY9A 3JARM 1QAGA 1SH6A 3I6XA 2YRNA 4Q57B 1WYRA 1VKAA 4Q59A 2VZDA 5A36A 3JALM 5BVRA 3HOPA 1WYPA 1RT8A 2EYNA 2WA7A 4EDMA 2VZIB 4Q58A 4EDNA 1H67A 3KMWB 4TXKA 1WYQA 1P2XA 2D87A 2DK9A 2JV9A 1WYMA 1SH5A 2WA6A 3F7PA 1AOAA 2K3SA 1WYOA 1PA7A 2D89A 3JAKM 1PXYA 1WKUA
chains in the Genus database with same CATH superfamily
4B7LA 2D85A 5A38A 3EAYA 1AA2A 2QJXA 1WYNA 2D86A 1WIXA 1WJOA 2WFNA 3HOCA 5FMUA 2HKPA 2WA5A 2R8UA 5L0OA 3REPB 2WE6A 1DXXA 2L3GA 1V5KA 2R0OA 5J8EA 3CO1A 1EUVA 1BKRA 1UEGA 1BHDA 4EDLA 5A37A 5FMTA 2VZCA 3FERA 3KMUB 3HORA 2HL9A 2K2RA 2HL8A 2D88A 1MB8A 5A4BA 2QJZA 2RR8A 4LVPA 2EYIA 4TXIA 1TJTA 1P5SA 1WYLA 1UJOA 2EE7A 2E9KA 2VZGB 2EQOA 3KY9A 3JARM 1QAGA 1SH6A 3I6XA 4DDPA 2YRNA 2VE7A 4Q57B 1WYRA 1VKAA 4Q59A 2VZDA 5A36A 3JALM 5BVRA 3HOPA 1WYPA 1RT8A 4LVRA 2EYNA 2WA7A 4EDMA 2VZIB 4Q58A 4EDNA 1H67A 3KMWB 4TXKA 1WYQA 1P2XA 2D87A 2DK9A 2JV9A 1WYMA 3VP7A 1SH5A 2IGPA 2WA6A 2WDTA 3F7PA 2VE7C 1AOAA 2K3SA 1WYOA 1PA7A 2D89A 3JAKM 1PXYA 1WKUA
chains in the Genus database with same CATH topology
4B7LA 2D85A 5A38A 1AA2A 2QJXA 1WYNA 2D86A 1WIXA 1WJOA 2WFNA 3HOCA 2WA5A 2R8UA 5L0OA 3REPB 1DXXA 2L3GA 1V5KA 2R0OA 5J8EA 3CO1A 1BKRA 1UEGA 1BHDA 4EDLA 5A37A 2VZCA 3FERA 3KMUB 3HORA 2K2RA 2D88A 1MB8A 5A4BA 2QJZA 2RR8A 2EYIA 4TXIA 1TJTA 1P5SA 1WYLA 1UJOA 2EE7A 2E9KA 2VZGB 3KY9A 3JARM 1QAGA 1SH6A 3I6XA 2YRNA 4Q57B 1WYRA 1VKAA 4Q59A 2VZDA 5A36A 3JALM 5BVRA 3HOPA 1WYPA 1RT8A 2EYNA 2WA7A 4EDMA 2VZIB 4Q58A 4EDNA 1H67A 3KMWB 4TXKA 1WYQA 1P2XA 2D87A 2DK9A 2JV9A 1WYMA 1SH5A 2WA6A 3F7PA 1AOAA 2K3SA 1WYOA 1PA7A 2D89A 3JAKM 1PXYA 1WKUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B7L A;  2D85 A;  5A38 A;  1AA2 A;  2QJX A;  1WYN A;  2D86 A;  1WIX A;  1WJO A;  2WFN A;  3HOC A;  2WA5 A;  2R8U A;  5L0O A;  3REP B;  1DXX A;  2L3G A;  1V5K A;  2R0O A;  5J8E A;  3CO1 A;  1BKR A;  1UEG A;  1BHD A;  4EDL A;  5A37 A;  2VZC A;  3FER A;  3KMU B;  3HOR A;  2K2R A;  2D88 A;  1MB8 A;  5A4B A;  2QJZ A;  2RR8 A;  2EYI A;  4TXI A;  1TJT A;  1P5S A;  1WYL A;  1UJO A;  2EE7 A;  2E9K A;  2VZG B;  3KY9 A;  3JAR M;  1QAG A;  1SH6 A;  3I6X A;  2YRN A;  4Q57 B;  1WYR A;  1VKA A;  4Q59 A;  2VZD A;  5A36 A;  3JAL M;  5BVR A;  3HOP A;  1WYP A;  1RT8 A;  2EYN A;  2WA7 A;  4EDM A;  2VZI B;  4Q58 A;  4EDN A;  1H67 A;  3KMW B;  4TXK A;  1WYQ A;  1P2X A;  2D87 A;  2DK9 A;  2JV9 A;  1WYM A;  1SH5 A;  2WA6 A;  3F7P A;  1AOA A;  2K3S A;  1WYO A;  1PA7 A;  2D89 A;  3JAK M;  1PXY A;  1WKU A; 
#chains in the Genus database with same CATH topology
 4B7L A;  2D85 A;  5A38 A;  3EAY A;  1AA2 A;  2QJX A;  1WYN A;  2D86 A;  1WIX A;  1WJO A;  2WFN A;  3HOC A;  5FMU A;  2HKP A;  2WA5 A;  2R8U A;  5L0O A;  3REP B;  2WE6 A;  1DXX A;  2L3G A;  1V5K A;  2R0O A;  5J8E A;  3CO1 A;  1EUV A;  1BKR A;  1UEG A;  1BHD A;  4EDL A;  5A37 A;  5FMT A;  2VZC A;  3FER A;  3KMU B;  3HOR A;  2HL9 A;  2K2R A;  2HL8 A;  2D88 A;  1MB8 A;  5A4B A;  2QJZ A;  2RR8 A;  4LVP A;  2EYI A;  4TXI A;  1TJT A;  1P5S A;  1WYL A;  1UJO A;  2EE7 A;  2E9K A;  2VZG B;  2EQO A;  3KY9 A;  3JAR M;  1QAG A;  1SH6 A;  3I6X A;  4DDP A;  2YRN A;  2VE7 A;  4Q57 B;  1WYR A;  1VKA A;  4Q59 A;  2VZD A;  5A36 A;  3JAL M;  5BVR A;  3HOP A;  1WYP A;  1RT8 A;  4LVR A;  2EYN A;  2WA7 A;  4EDM A;  2VZI B;  4Q58 A;  4EDN A;  1H67 A;  3KMW B;  4TXK A;  1WYQ A;  1P2X A;  2D87 A;  2DK9 A;  2JV9 A;  1WYM A;  3VP7 A;  1SH5 A;  2IGP A;  2WA6 A;  2WDT A;  3F7P A;  2VE7 C;  1AOA A;  2K3S A;  1WYO A;  1PA7 A;  2D89 A;  3JAK M;  1PXY A;  1WKU A; 
#chains in the Genus database with same CATH homology
 4B7L A;  2D85 A;  5A38 A;  1AA2 A;  2QJX A;  1WYN A;  2D86 A;  1WIX A;  1WJO A;  2WFN A;  3HOC A;  2WA5 A;  2R8U A;  5L0O A;  3REP B;  1DXX A;  2L3G A;  1V5K A;  2R0O A;  5J8E A;  3CO1 A;  1BKR A;  1UEG A;  1BHD A;  4EDL A;  5A37 A;  2VZC A;  3FER A;  3KMU B;  3HOR A;  2K2R A;  2D88 A;  1MB8 A;  5A4B A;  2QJZ A;  2RR8 A;  2EYI A;  4TXI A;  1TJT A;  1P5S A;  1WYL A;  1UJO A;  2EE7 A;  2E9K A;  2VZG B;  3KY9 A;  3JAR M;  1QAG A;  1SH6 A;  3I6X A;  2YRN A;  4Q57 B;  1WYR A;  1VKA A;  4Q59 A;  2VZD A;  5A36 A;  3JAL M;  5BVR A;  3HOP A;  1WYP A;  1RT8 A;  2EYN A;  2WA7 A;  4EDM A;  2VZI B;  4Q58 A;  4EDN A;  1H67 A;  3KMW B;  4TXK A;  1WYQ A;  1P2X A;  2D87 A;  2DK9 A;  2JV9 A;  1WYM A;  1SH5 A;  2WA6 A;  3F7P A;  1AOA A;  2K3S A;  1WYO A;  1PA7 A;  2D89 A;  3JAK M;  1PXY A;  1WKU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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