1PA7A

Crystal structure of amino-terminal microtubule binding domain of eb1
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
130
structure length
130
Chain Sequence
MAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the amino-terminal microtubule-binding domain of end-binding protein 1 (EB1)
pubmed doi rcsb
molecule tags Structural protein
source organism Homo sapiens
molecule keywords Microtubule-associated protein RP/EB family member 1
total genus 45
structure length 130
sequence length 130
ec nomenclature
pdb deposition date 2003-05-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1pa7A00
2JV9A 3FERA 3F7PA 1RT8A 2D88A 1WIXA 2WA7A 1WKUA 5A36A 1AA2A 1SH6A 1UEGA 1WYOA 3REPB 2QJXA 3JALM 1WYNA 1MB8A 2VZDA 1BHDA 1PXYA 1WYQA 3CO1A 1P2XA 1SH5A 4TXKA 2VZIB 5BVRA 2K2RA 2VZGB 2L3GA 3HORA 5J8EA 1PA7A 1WJOA 1V5KA 2K3SA 4EDNA 1TJTA 1H67A 2E9KA 1UJOA 2WFNA 1WYPA 3HOPA 4Q59A 2R8UA 4Q57B 2WA6A 2R0OA 3KY9A 1P5SA 3KMUB 1BKRA 1QAGA 4TXIA 2D87A 3JARM 5A37A 4EDLA 2EYNA 1VKAA 1AOAA 2EYIA 5A38A 5A4BA 1WYMA 3I6XA 2RR8A 3HOCA 4EDMA 2YRNA 2D85A 3KMWB 1DXXA 2QJZA 4Q58A 5L0OA 4B7LA 3JAKM 2WA5A 2EE7A 2VZCA 1WYRA 2D89A 2DK9A 2D86A 1WYLA
chains in the Genus database with same CATH superfamily
2JV9A 5FMUA 3FERA 3F7PA 1RT8A 2D88A 2WDTA 1WIXA 2WA7A 1EUVA 1WKUA 5A36A 1AA2A 1SH6A 2WE6A 1UEGA 1WYOA 2QJXA 3REPB 4DDPA 3JALM 1WYNA 2EQOA 1MB8A 2VZDA 1BHDA 1PXYA 3VP7A 1WYQA 3CO1A 1P2XA 2HKPA 1SH5A 4TXKA 2VZIB 5BVRA 2K2RA 2VZGB 2L3GA 3HORA 5J8EA 4LVRA 2IGPA 4LVPA 1PA7A 1WJOA 1V5KA 2K3SA 4EDNA 1TJTA 1H67A 2E9KA 1UJOA 2WFNA 1WYPA 3HOPA 4Q59A 2R8UA 2HL9A 4Q57B 2WA6A 2R0OA 3KY9A 1P5SA 3KMUB 5FMTA 1BKRA 1QAGA 4TXIA 2D87A 3JARM 3EAYA 5A37A 4EDLA 2EYNA 1VKAA 1AOAA 2HL8A 2EYIA 5A38A 5A4BA 1WYMA 3I6XA 2RR8A 3HOCA 4EDMA 2YRNA 2D85A 3KMWB 1DXXA 2QJZA 4Q58A 5L0OA 4B7LA 3JAKM 2WA5A 2EE7A 2VZCA 1WYRA 2D89A 2DK9A 2VE7A 2VE7C 2D86A 1WYLA
chains in the Genus database with same CATH topology
2JV9A 3FERA 3F7PA 1RT8A 2D88A 1WIXA 2WA7A 1WKUA 5A36A 1AA2A 1SH6A 1UEGA 1WYOA 3REPB 2QJXA 3JALM 1WYNA 1MB8A 2VZDA 1BHDA 1PXYA 1WYQA 3CO1A 1P2XA 1SH5A 4TXKA 2VZIB 5BVRA 2K2RA 2VZGB 2L3GA 3HORA 5J8EA 1PA7A 1WJOA 1V5KA 2K3SA 4EDNA 1TJTA 1H67A 2E9KA 1UJOA 2WFNA 1WYPA 3HOPA 4Q59A 2R8UA 4Q57B 2WA6A 2R0OA 3KY9A 1P5SA 3KMUB 1BKRA 1QAGA 4TXIA 2D87A 3JARM 5A37A 4EDLA 2EYNA 1VKAA 1AOAA 2EYIA 5A38A 5A4BA 1WYMA 3I6XA 2RR8A 3HOCA 4EDMA 2YRNA 2D85A 3KMWB 1DXXA 2QJZA 4Q58A 5L0OA 4B7LA 3JAKM 2WA5A 2EE7A 2VZCA 1WYRA 2D89A 2DK9A 2D86A 1WYLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JV9 A;  3FER A;  3F7P A;  1RT8 A;  2D88 A;  1WIX A;  2WA7 A;  1WKU A;  5A36 A;  1AA2 A;  1SH6 A;  1UEG A;  1WYO A;  3REP B;  2QJX A;  3JAL M;  1WYN A;  1MB8 A;  2VZD A;  1BHD A;  1PXY A;  1WYQ A;  3CO1 A;  1P2X A;  1SH5 A;  4TXK A;  2VZI B;  5BVR A;  2K2R A;  2VZG B;  2L3G A;  3HOR A;  5J8E A;  1PA7 A;  1WJO A;  1V5K A;  2K3S A;  4EDN A;  1TJT A;  1H67 A;  2E9K A;  1UJO A;  2WFN A;  1WYP A;  3HOP A;  4Q59 A;  2R8U A;  4Q57 B;  2WA6 A;  2R0O A;  3KY9 A;  1P5S A;  3KMU B;  1BKR A;  1QAG A;  4TXI A;  2D87 A;  3JAR M;  5A37 A;  4EDL A;  2EYN A;  1VKA A;  1AOA A;  2EYI A;  5A38 A;  5A4B A;  1WYM A;  3I6X A;  2RR8 A;  3HOC A;  4EDM A;  2YRN A;  2D85 A;  3KMW B;  1DXX A;  2QJZ A;  4Q58 A;  5L0O A;  4B7L A;  3JAK M;  2WA5 A;  2EE7 A;  2VZC A;  1WYR A;  2D89 A;  2DK9 A;  2D86 A;  1WYL A; 
#chains in the Genus database with same CATH topology
 2JV9 A;  5FMU A;  3FER A;  3F7P A;  1RT8 A;  2D88 A;  2WDT A;  1WIX A;  2WA7 A;  1EUV A;  1WKU A;  5A36 A;  1AA2 A;  1SH6 A;  2WE6 A;  1UEG A;  1WYO A;  2QJX A;  3REP B;  4DDP A;  3JAL M;  1WYN A;  2EQO A;  1MB8 A;  2VZD A;  1BHD A;  1PXY A;  3VP7 A;  1WYQ A;  3CO1 A;  1P2X A;  2HKP A;  1SH5 A;  4TXK A;  2VZI B;  5BVR A;  2K2R A;  2VZG B;  2L3G A;  3HOR A;  5J8E A;  4LVR A;  2IGP A;  4LVP A;  1PA7 A;  1WJO A;  1V5K A;  2K3S A;  4EDN A;  1TJT A;  1H67 A;  2E9K A;  1UJO A;  2WFN A;  1WYP A;  3HOP A;  4Q59 A;  2R8U A;  2HL9 A;  4Q57 B;  2WA6 A;  2R0O A;  3KY9 A;  1P5S A;  3KMU B;  5FMT A;  1BKR A;  1QAG A;  4TXI A;  2D87 A;  3JAR M;  3EAY A;  5A37 A;  4EDL A;  2EYN A;  1VKA A;  1AOA A;  2HL8 A;  2EYI A;  5A38 A;  5A4B A;  1WYM A;  3I6X A;  2RR8 A;  3HOC A;  4EDM A;  2YRN A;  2D85 A;  3KMW B;  1DXX A;  2QJZ A;  4Q58 A;  5L0O A;  4B7L A;  3JAK M;  2WA5 A;  2EE7 A;  2VZC A;  1WYR A;  2D89 A;  2DK9 A;  2VE7 A;  2VE7 C;  2D86 A;  1WYL A; 
#chains in the Genus database with same CATH homology
 2JV9 A;  3FER A;  3F7P A;  1RT8 A;  2D88 A;  1WIX A;  2WA7 A;  1WKU A;  5A36 A;  1AA2 A;  1SH6 A;  1UEG A;  1WYO A;  3REP B;  2QJX A;  3JAL M;  1WYN A;  1MB8 A;  2VZD A;  1BHD A;  1PXY A;  1WYQ A;  3CO1 A;  1P2X A;  1SH5 A;  4TXK A;  2VZI B;  5BVR A;  2K2R A;  2VZG B;  2L3G A;  3HOR A;  5J8E A;  1PA7 A;  1WJO A;  1V5K A;  2K3S A;  4EDN A;  1TJT A;  1H67 A;  2E9K A;  1UJO A;  2WFN A;  1WYP A;  3HOP A;  4Q59 A;  2R8U A;  4Q57 B;  2WA6 A;  2R0O A;  3KY9 A;  1P5S A;  3KMU B;  1BKR A;  1QAG A;  4TXI A;  2D87 A;  3JAR M;  5A37 A;  4EDL A;  2EYN A;  1VKA A;  1AOA A;  2EYI A;  5A38 A;  5A4B A;  1WYM A;  3I6X A;  2RR8 A;  3HOC A;  4EDM A;  2YRN A;  2D85 A;  3KMW B;  1DXX A;  2QJZ A;  4Q58 A;  5L0O A;  4B7L A;  3JAK M;  2WA5 A;  2EE7 A;  2VZC A;  1WYR A;  2D89 A;  2DK9 A;  2D86 A;  1WYL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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