1QS1A

Crystal structure of vegetative insecticidal protein2 (vip2)
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
402
structure length
402
Chain Sequence
TDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVSSKERVILKVTVPSGKGSTTPTKAGVILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Bacillus cereus
publication title Evolution and mechanism from structures of an ADP-ribosylating toxin and NAD complex.
pubmed doi rcsb
molecule keywords ADP-RIBOSYLTRANSFERASE
total genus 136
structure length 402
sequence length 402
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.30: NAD(+) ADP-ribosyltransferase.
pdb deposition date 1999-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A01
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A02
2C8DA 3NTSA 4PKTA 4GF1A 3BUZA 2C8FE 2WN8A 4ELNA 1PWWA 3BW8A 4WF6A 4TR5A 1G24A 1OJZA 2WN5A 4FXQA 4H0XA 4PKQA 5D1UA 2C8AA 1GZEA 3U0JA 1OG3A 4H03A 4H0YA 1PWPA 2WN4A 4XM7A 4PKUA 2J3VA 4DV8A 5D1TA 2GWLA 2WN7A 2C8BX 4XM6A 5H03A 1QS2A 1GZFA 2C8CA 1OG4A 2C8HA 1GIQA 1GY0A 4XM8A 4PKWA 4FK7A 4XSHB 4PKVA 1QS1A 2C8EE 1R45A 2C89A 1R4BA 1PWUA 1OJQA 2BOVB 5DZQA 1JKYA 2A78B 4H0TA 1YQYA 2GWMA 1UZIA 5BWMB 1J7NA 5H04A 2J3XA 5D1SA 1PWQA 2WN6A 2A9KB 2C8GA 4PKRA 1GIRA 4XSGB 1GXYA 1OG1A 5GTTA 4GY2A 1GXZA 4PKSA 1ZXVA 4FMLA 2J3ZA 4H0VA 1PWVA
chains in the Genus database with same CATH superfamily
2C8DA 3NTSA 4PKTA 4GF1A 3BUZA 2C8FE 2WN8A 4ELNA 1PWWA 3BW8A 4WF6A 4TR5A 1G24A 1OJZA 2WN5A 4FXQA 4H0XA 4PKQA 5D1UA 2C8AA 1GZEA 3U0JA 1OG3A 4H03A 4H0YA 1PWPA 2WN4A 4XM7A 4PKUA 2J3VA 4DV8A 5D1TA 2GWLA 2WN7A 2C8BX 4XM6A 5H03A 1QS2A 1GZFA 2C8CA 1OG4A 2C8HA 1GIQA 1GY0A 4XM8A 4PKWA 4FK7A 4XSHB 4PKVA 1QS1A 2C8EE 1R45A 2C89A 1R4BA 1PWUA 1OJQA 2BOVB 5DZQA 1JKYA 2A78B 4H0TA 1YQYA 2GWMA 1UZIA 5BWMB 1J7NA 5H04A 2J3XA 5D1SA 1PWQA 2WN6A 2A9KB 2C8GA 4PKRA 1GIRA 4XSGB 1GXYA 1OG1A 5GTTA 4GY2A 1GXZA 4PKSA 1ZXVA 4FMLA 2J3ZA 4H0VA 1PWVA
chains in the Genus database with same CATH topology
2C8DA 3NTSA 4PKTA 4GF1A 3BUZA 2C8FE 2WN8A 4ELNA 1PWWA 3BW8A 4WF6A 4TR5A 1G24A 1OJZA 2WN5A 4FXQA 4H0XA 4PKQA 5D1UA 2C8AA 1GZEA 3U0JA 1OG3A 4H03A 4H0YA 1PWPA 2WN4A 4XM7A 4PKUA 2J3VA 4DV8A 5D1TA 2GWLA 2WN7A 2C8BX 4XM6A 5H03A 1QS2A 1GZFA 2C8CA 1OG4A 2C8HA 1GIQA 1GY0A 4XM8A 4PKWA 4FK7A 4XSHB 4PKVA 1QS1A 2C8EE 1R45A 2C89A 1R4BA 1PWUA 1OJQA 2BOVB 5DZQA 1JKYA 2A78B 4H0TA 1YQYA 2GWMA 1UZIA 5BWMB 1J7NA 5H04A 2J3XA 5D1SA 1PWQA 2WN6A 2A9KB 2C8GA 4PKRA 1GIRA 4XSGB 1GXYA 1OG1A 5GTTA 4GY2A 1GXZA 4PKSA 1ZXVA 4FMLA 2J3ZA 4H0VA 1PWVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C8D A;  3NTS A;  4PKT A;  4GF1 A;  3BUZ A;  2C8F E;  2WN8 A;  4ELN A;  1PWW A;  3BW8 A;  4WF6 A;  4TR5 A;  1G24 A;  1OJZ A;  2WN5 A;  4FXQ A;  4H0X A;  4PKQ A;  5D1U A;  2C8A A;  1GZE A;  3U0J A;  1OG3 A;  4H03 A;  4H0Y A;  1PWP A;  2WN4 A;  4XM7 A;  4PKU A;  2J3V A;  4DV8 A;  5D1T A;  2GWL A;  2WN7 A;  2C8B X;  4XM6 A;  5H03 A;  1QS2 A;  1GZF A;  2C8C A;  1OG4 A;  2C8H A;  1GIQ A;  1GY0 A;  4XM8 A;  4PKW A;  4FK7 A;  4XSH B;  4PKV A;  1QS1 A;  2C8E E;  1R45 A;  2C89 A;  1R4B A;  1PWU A;  1OJQ A;  2BOV B;  5DZQ A;  1JKY A;  2A78 B;  4H0T A;  1YQY A;  2GWM A;  1UZI A;  5BWM B;  1J7N A;  5H04 A;  2J3X A;  5D1S A;  1PWQ A;  2WN6 A;  2A9K B;  2C8G A;  4PKR A;  1GIR A;  4XSG B;  1GXY A;  1OG1 A;  5GTT A;  4GY2 A;  1GXZ A;  4PKS A;  1ZXV A;  4FML A;  2J3Z A;  4H0V A;  1PWV A; 
#chains in the Genus database with same CATH topology
 2C8D A;  3NTS A;  4PKT A;  4GF1 A;  3BUZ A;  2C8F E;  2WN8 A;  4ELN A;  1PWW A;  3BW8 A;  4WF6 A;  4TR5 A;  1G24 A;  1OJZ A;  2WN5 A;  4FXQ A;  4H0X A;  4PKQ A;  5D1U A;  2C8A A;  1GZE A;  3U0J A;  1OG3 A;  4H03 A;  4H0Y A;  1PWP A;  2WN4 A;  4XM7 A;  4PKU A;  2J3V A;  4DV8 A;  5D1T A;  2GWL A;  2WN7 A;  2C8B X;  4XM6 A;  5H03 A;  1QS2 A;  1GZF A;  2C8C A;  1OG4 A;  2C8H A;  1GIQ A;  1GY0 A;  4XM8 A;  4PKW A;  4FK7 A;  4XSH B;  4PKV A;  1QS1 A;  2C8E E;  1R45 A;  2C89 A;  1R4B A;  1PWU A;  1OJQ A;  2BOV B;  5DZQ A;  1JKY A;  2A78 B;  4H0T A;  1YQY A;  2GWM A;  1UZI A;  5BWM B;  1J7N A;  5H04 A;  2J3X A;  5D1S A;  1PWQ A;  2WN6 A;  2A9K B;  2C8G A;  4PKR A;  1GIR A;  4XSG B;  1GXY A;  1OG1 A;  5GTT A;  4GY2 A;  1GXZ A;  4PKS A;  1ZXV A;  4FML A;  2J3Z A;  4H0V A;  1PWV A; 
#chains in the Genus database with same CATH homology
 2C8D A;  3NTS A;  4PKT A;  4GF1 A;  3BUZ A;  2C8F E;  2WN8 A;  4ELN A;  1PWW A;  3BW8 A;  4WF6 A;  4TR5 A;  1G24 A;  1OJZ A;  2WN5 A;  4FXQ A;  4H0X A;  4PKQ A;  5D1U A;  2C8A A;  1GZE A;  3U0J A;  1OG3 A;  4H03 A;  4H0Y A;  1PWP A;  2WN4 A;  4XM7 A;  4PKU A;  2J3V A;  4DV8 A;  5D1T A;  2GWL A;  2WN7 A;  2C8B X;  4XM6 A;  5H03 A;  1QS2 A;  1GZF A;  2C8C A;  1OG4 A;  2C8H A;  1GIQ A;  1GY0 A;  4XM8 A;  4PKW A;  4FK7 A;  4XSH B;  4PKV A;  1QS1 A;  2C8E E;  1R45 A;  2C89 A;  1R4B A;  1PWU A;  1OJQ A;  2BOV B;  5DZQ A;  1JKY A;  2A78 B;  4H0T A;  1YQY A;  2GWM A;  1UZI A;  5BWM B;  1J7N A;  5H04 A;  2J3X A;  5D1S A;  1PWQ A;  2WN6 A;  2A9K B;  2C8G A;  4PKR A;  1GIR A;  4XSG B;  1GXY A;  1OG1 A;  5GTT A;  4GY2 A;  1GXZ A;  4PKS A;  1ZXV A;  4FML A;  2J3Z A;  4H0V A;  1PWV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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