1QS1A

Crystal structure of vegetative insecticidal protein2 (vip2)
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
402
structure length
402
Chain Sequence
TDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVSSKERVILKVTVPSGKGSTTPTKAGVILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords ADP-RIBOSYLTRANSFERASE
publication title Evolution and mechanism from structures of an ADP-ribosylating toxin and NAD complex.
pubmed doi rcsb
source organism Bacillus cereus
total genus 136
structure length 402
sequence length 402
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.30: NAD(+) ADP-ribosyltransferase.
pdb deposition date 1999-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A01
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A02
1QS1A 1OG4A 3BW8A 4XSHB 1YQYA 4PKSA 1GIRA 4H0VA 1OJQA 2BOVB 1ZXVA 2WN4A 5GTTA 2A78B 2GWMA 2GWLA 1PWUA 5H03A 1PWVA 2C8EE 1GY0A 4PKQA 4XM6A 4FXQA 4WF6A 2C89A 4GY2A 1OG1A 2A9KB 2WN5A 3BUZA 1GZFA 2C8CA 5H04A 1PWPA 5D1SA 4H0TA 1GXZA 2J3VA 2WN6A 2C8GA 1GXYA 2C8AA 4PKTA 4PKUA 1JKYA 4PKRA 5D1UA 1OJZA 2C8BX 1GZEA 1QS2A 2C8DA 2WN8A 2C8FE 2J3ZA 3U0JA 1PWWA 4H0XA 5DZQA 1J7NA 3NTSA 4GF1A 2C8HA 4PKWA 4ELNA 1UZIA 2J3XA 4FMLA 4H03A 4PKVA 1R4BA 4XM8A 4XSGB 1GIQA 4FK7A 1OG3A 4DV8A 1G24A 4H0YA 1R45A 4TR5A 2WN7A 4XM7A 1PWQA 5D1TA 5BWMB
chains in the Genus database with same CATH superfamily
1QS1A 1OG4A 3BW8A 4XSHB 1YQYA 4PKSA 1GIRA 4H0VA 1OJQA 2BOVB 1ZXVA 2WN4A 5GTTA 2A78B 2GWMA 2GWLA 1PWUA 5H03A 1PWVA 2C8EE 1GY0A 4PKQA 4XM6A 4FXQA 4WF6A 2C89A 4GY2A 1OG1A 2A9KB 2WN5A 3BUZA 1GZFA 2C8CA 5H04A 1PWPA 5D1SA 4H0TA 1GXZA 2J3VA 2WN6A 2C8GA 1GXYA 2C8AA 4PKTA 4PKUA 1JKYA 4PKRA 5D1UA 1OJZA 2C8BX 1GZEA 1QS2A 2C8DA 2WN8A 2C8FE 2J3ZA 3U0JA 1PWWA 4H0XA 5DZQA 1J7NA 3NTSA 4GF1A 2C8HA 4PKWA 4ELNA 1UZIA 2J3XA 4FMLA 4H03A 4PKVA 1R4BA 4XM8A 4XSGB 1GIQA 4FK7A 1OG3A 4DV8A 1G24A 4H0YA 1R45A 4TR5A 2WN7A 4XM7A 1PWQA 5D1TA 5BWMB
chains in the Genus database with same CATH topology
1QS1A 1OG4A 3BW8A 4XSHB 1YQYA 4PKSA 1GIRA 4H0VA 1OJQA 2BOVB 1ZXVA 2WN4A 5GTTA 2A78B 2GWMA 2GWLA 1PWUA 5H03A 1PWVA 2C8EE 1GY0A 4PKQA 4XM6A 4FXQA 4WF6A 2C89A 4GY2A 1OG1A 2A9KB 2WN5A 3BUZA 1GZFA 2C8CA 5H04A 1PWPA 5D1SA 4H0TA 1GXZA 2J3VA 2WN6A 2C8GA 1GXYA 2C8AA 4PKTA 4PKUA 1JKYA 4PKRA 5D1UA 1OJZA 2C8BX 1GZEA 1QS2A 2C8DA 2WN8A 2C8FE 2J3ZA 3U0JA 1PWWA 4H0XA 5DZQA 1J7NA 3NTSA 4GF1A 2C8HA 4PKWA 4ELNA 1UZIA 2J3XA 4FMLA 4H03A 4PKVA 1R4BA 4XM8A 4XSGB 1GIQA 4FK7A 1OG3A 4DV8A 1G24A 4H0YA 1R45A 4TR5A 2WN7A 4XM7A 1PWQA 5D1TA 5BWMB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QS1 A;  1OG4 A;  3BW8 A;  4XSH B;  1YQY A;  4PKS A;  1GIR A;  4H0V A;  1OJQ A;  2BOV B;  1ZXV A;  2WN4 A;  5GTT A;  2A78 B;  2GWM A;  2GWL A;  1PWU A;  5H03 A;  1PWV A;  2C8E E;  1GY0 A;  4PKQ A;  4XM6 A;  4FXQ A;  4WF6 A;  2C89 A;  4GY2 A;  1OG1 A;  2A9K B;  2WN5 A;  3BUZ A;  1GZF A;  2C8C A;  5H04 A;  1PWP A;  5D1S A;  4H0T A;  1GXZ A;  2J3V A;  2WN6 A;  2C8G A;  1GXY A;  2C8A A;  4PKT A;  4PKU A;  1JKY A;  4PKR A;  5D1U A;  1OJZ A;  2C8B X;  1GZE A;  1QS2 A;  2C8D A;  2WN8 A;  2C8F E;  2J3Z A;  3U0J A;  1PWW A;  4H0X A;  5DZQ A;  1J7N A;  3NTS A;  4GF1 A;  2C8H A;  4PKW A;  4ELN A;  1UZI A;  2J3X A;  4FML A;  4H03 A;  4PKV A;  1R4B A;  4XM8 A;  4XSG B;  1GIQ A;  4FK7 A;  1OG3 A;  4DV8 A;  1G24 A;  4H0Y A;  1R45 A;  4TR5 A;  2WN7 A;  4XM7 A;  1PWQ A;  5D1T A;  5BWM B; 
#chains in the Genus database with same CATH topology
 1QS1 A;  1OG4 A;  3BW8 A;  4XSH B;  1YQY A;  4PKS A;  1GIR A;  4H0V A;  1OJQ A;  2BOV B;  1ZXV A;  2WN4 A;  5GTT A;  2A78 B;  2GWM A;  2GWL A;  1PWU A;  5H03 A;  1PWV A;  2C8E E;  1GY0 A;  4PKQ A;  4XM6 A;  4FXQ A;  4WF6 A;  2C89 A;  4GY2 A;  1OG1 A;  2A9K B;  2WN5 A;  3BUZ A;  1GZF A;  2C8C A;  5H04 A;  1PWP A;  5D1S A;  4H0T A;  1GXZ A;  2J3V A;  2WN6 A;  2C8G A;  1GXY A;  2C8A A;  4PKT A;  4PKU A;  1JKY A;  4PKR A;  5D1U A;  1OJZ A;  2C8B X;  1GZE A;  1QS2 A;  2C8D A;  2WN8 A;  2C8F E;  2J3Z A;  3U0J A;  1PWW A;  4H0X A;  5DZQ A;  1J7N A;  3NTS A;  4GF1 A;  2C8H A;  4PKW A;  4ELN A;  1UZI A;  2J3X A;  4FML A;  4H03 A;  4PKV A;  1R4B A;  4XM8 A;  4XSG B;  1GIQ A;  4FK7 A;  1OG3 A;  4DV8 A;  1G24 A;  4H0Y A;  1R45 A;  4TR5 A;  2WN7 A;  4XM7 A;  1PWQ A;  5D1T A;  5BWM B; 
#chains in the Genus database with same CATH homology
 1QS1 A;  1OG4 A;  3BW8 A;  4XSH B;  1YQY A;  4PKS A;  1GIR A;  4H0V A;  1OJQ A;  2BOV B;  1ZXV A;  2WN4 A;  5GTT A;  2A78 B;  2GWM A;  2GWL A;  1PWU A;  5H03 A;  1PWV A;  2C8E E;  1GY0 A;  4PKQ A;  4XM6 A;  4FXQ A;  4WF6 A;  2C89 A;  4GY2 A;  1OG1 A;  2A9K B;  2WN5 A;  3BUZ A;  1GZF A;  2C8C A;  5H04 A;  1PWP A;  5D1S A;  4H0T A;  1GXZ A;  2J3V A;  2WN6 A;  2C8G A;  1GXY A;  2C8A A;  4PKT A;  4PKU A;  1JKY A;  4PKR A;  5D1U A;  1OJZ A;  2C8B X;  1GZE A;  1QS2 A;  2C8D A;  2WN8 A;  2C8F E;  2J3Z A;  3U0J A;  1PWW A;  4H0X A;  5DZQ A;  1J7N A;  3NTS A;  4GF1 A;  2C8H A;  4PKW A;  4ELN A;  1UZI A;  2J3X A;  4FML A;  4H03 A;  4PKV A;  1R4B A;  4XM8 A;  4XSG B;  1GIQ A;  4FK7 A;  1OG3 A;  4DV8 A;  1G24 A;  4H0Y A;  1R45 A;  4TR5 A;  2WN7 A;  4XM7 A;  1PWQ A;  5D1T A;  5BWM B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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