1QS1A

Crystal structure of vegetative insecticidal protein2 (vip2)
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
402
structure length
402
Chain Sequence
TDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKEITFSMAGSFEDEIKDLKEIDKMFDKTNLSNSIITYKNVEPTTIGFNKSLTEGNTINSDAMAQFKEQFLDRDIKFDSYLDTHLTAQQVSSKERVILKVTVPSGKGSTTPTKAGVILNNSEYKMLIDNGYMVHVDKVSKVVKKGVECLQIEGTLKKSLDFKNDINAEAHSWGMKNYEEWAKDLTDSQREALDGYARQDYKEINNYLRNQGGSGNEKLDAQIKNISDALGKKPIPENITVYRWCGMPEFGYQISDPLPSLKDFEEQFLNTIKEDKGYMSTSLSSERLAAFGSRKIILRLQVPKGSTGAYLSAIGGFASEKEILLDKDSKYHIDKVTEVIIKGVKRYVVDATLLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ADP-RIBOSYLTRANSFERASE
publication title Evolution and mechanism from structures of an ADP-ribosylating toxin and NAD complex.
pubmed doi rcsb
source organism Bacillus cereus
molecule tags Toxin
total genus 136
structure length 402
sequence length 402
chains with identical sequence B, C, D
ec nomenclature ec 2.4.2.30: NAD(+) ADP-ribosyltransferase.
pdb deposition date 1999-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A01
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1qs1A02
4WF6A 5DZQA 1GIQA 3BW8A 1PWVA 1PWPA 2WN8A 4H0VA 1ZXVA 4H0YA 5BWMB 1OJQA 4XM6A 4XM8A 2J3ZA 4PKWA 4FXQA 4PKTA 2WN7A 3NTSA 2WN5A 1G24A 1GZEA 4FMLA 4ELNA 4PKUA 2C8BX 2C8FE 2WN6A 2GWLA 4PKQA 2C8AA 1JKYA 1R4BA 4TR5A 1J7NA 3U0JA 1GY0A 2C89A 4H0TA 4H03A 1GIRA 2A78B 2J3VA 5H03A 1OG3A 1PWUA 2BOVB 2C8GA 5D1TA 1QS2A 1QS1A 4XSGB 4PKRA 1PWWA 5H04A 2WN4A 4PKSA 2C8CA 4DV8A 1OG1A 1OJZA 4GY2A 1UZIA 2J3XA 2GWMA 1GZFA 3BUZA 1PWQA 1GXYA 5GTTA 4GF1A 1GXZA 2A9KB 4XSHB 1R45A 2C8HA 1OG4A 5D1SA 2C8DA 4H0XA 5D1UA 4PKVA 1YQYA 4FK7A 4XM7A 2C8EE
chains in the Genus database with same CATH superfamily
4WF6A 5DZQA 1GIQA 3BW8A 1PWVA 1PWPA 2WN8A 4H0VA 1ZXVA 4H0YA 5BWMB 1OJQA 4XM6A 4XM8A 2J3ZA 4PKWA 4FXQA 4PKTA 2WN7A 3NTSA 2WN5A 1G24A 1GZEA 4FMLA 4ELNA 4PKUA 2C8BX 2C8FE 2WN6A 2GWLA 4PKQA 2C8AA 1JKYA 1R4BA 4TR5A 1J7NA 3U0JA 1GY0A 2C89A 4H0TA 4H03A 1GIRA 2A78B 2J3VA 5H03A 1OG3A 1PWUA 2BOVB 2C8GA 5D1TA 1QS2A 1QS1A 4XSGB 4PKRA 1PWWA 5H04A 2WN4A 4PKSA 2C8CA 4DV8A 1OG1A 1OJZA 4GY2A 1UZIA 2J3XA 2GWMA 1GZFA 3BUZA 1PWQA 1GXYA 5GTTA 4GF1A 1GXZA 2A9KB 4XSHB 1R45A 2C8HA 1OG4A 5D1SA 2C8DA 4H0XA 5D1UA 4PKVA 1YQYA 4FK7A 4XM7A 2C8EE
chains in the Genus database with same CATH topology
4WF6A 5DZQA 1GIQA 3BW8A 1PWVA 1PWPA 2WN8A 4H0VA 1ZXVA 4H0YA 5BWMB 1OJQA 4XM6A 4XM8A 2J3ZA 4PKWA 4FXQA 4PKTA 2WN7A 3NTSA 2WN5A 1G24A 1GZEA 4FMLA 4ELNA 4PKUA 2C8BX 2C8FE 2WN6A 2GWLA 4PKQA 2C8AA 1JKYA 1R4BA 4TR5A 1J7NA 3U0JA 1GY0A 2C89A 4H0TA 4H03A 1GIRA 2A78B 2J3VA 5H03A 1OG3A 1PWUA 2BOVB 2C8GA 5D1TA 1QS2A 1QS1A 4XSGB 4PKRA 1PWWA 5H04A 2WN4A 4PKSA 2C8CA 4DV8A 1OG1A 1OJZA 4GY2A 1UZIA 2J3XA 2GWMA 1GZFA 3BUZA 1PWQA 1GXYA 5GTTA 4GF1A 1GXZA 2A9KB 4XSHB 1R45A 2C8HA 1OG4A 5D1SA 2C8DA 4H0XA 5D1UA 4PKVA 1YQYA 4FK7A 4XM7A 2C8EE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WF6 A;  5DZQ A;  1GIQ A;  3BW8 A;  1PWV A;  1PWP A;  2WN8 A;  4H0V A;  1ZXV A;  4H0Y A;  5BWM B;  1OJQ A;  4XM6 A;  4XM8 A;  2J3Z A;  4PKW A;  4FXQ A;  4PKT A;  2WN7 A;  3NTS A;  2WN5 A;  1G24 A;  1GZE A;  4FML A;  4ELN A;  4PKU A;  2C8B X;  2C8F E;  2WN6 A;  2GWL A;  4PKQ A;  2C8A A;  1JKY A;  1R4B A;  4TR5 A;  1J7N A;  3U0J A;  1GY0 A;  2C89 A;  4H0T A;  4H03 A;  1GIR A;  2A78 B;  2J3V A;  5H03 A;  1OG3 A;  1PWU A;  2BOV B;  2C8G A;  5D1T A;  1QS2 A;  1QS1 A;  4XSG B;  4PKR A;  1PWW A;  5H04 A;  2WN4 A;  4PKS A;  2C8C A;  4DV8 A;  1OG1 A;  1OJZ A;  4GY2 A;  1UZI A;  2J3X A;  2GWM A;  1GZF A;  3BUZ A;  1PWQ A;  1GXY A;  5GTT A;  4GF1 A;  1GXZ A;  2A9K B;  4XSH B;  1R45 A;  2C8H A;  1OG4 A;  5D1S A;  2C8D A;  4H0X A;  5D1U A;  4PKV A;  1YQY A;  4FK7 A;  4XM7 A;  2C8E E; 
#chains in the Genus database with same CATH topology
 4WF6 A;  5DZQ A;  1GIQ A;  3BW8 A;  1PWV A;  1PWP A;  2WN8 A;  4H0V A;  1ZXV A;  4H0Y A;  5BWM B;  1OJQ A;  4XM6 A;  4XM8 A;  2J3Z A;  4PKW A;  4FXQ A;  4PKT A;  2WN7 A;  3NTS A;  2WN5 A;  1G24 A;  1GZE A;  4FML A;  4ELN A;  4PKU A;  2C8B X;  2C8F E;  2WN6 A;  2GWL A;  4PKQ A;  2C8A A;  1JKY A;  1R4B A;  4TR5 A;  1J7N A;  3U0J A;  1GY0 A;  2C89 A;  4H0T A;  4H03 A;  1GIR A;  2A78 B;  2J3V A;  5H03 A;  1OG3 A;  1PWU A;  2BOV B;  2C8G A;  5D1T A;  1QS2 A;  1QS1 A;  4XSG B;  4PKR A;  1PWW A;  5H04 A;  2WN4 A;  4PKS A;  2C8C A;  4DV8 A;  1OG1 A;  1OJZ A;  4GY2 A;  1UZI A;  2J3X A;  2GWM A;  1GZF A;  3BUZ A;  1PWQ A;  1GXY A;  5GTT A;  4GF1 A;  1GXZ A;  2A9K B;  4XSH B;  1R45 A;  2C8H A;  1OG4 A;  5D1S A;  2C8D A;  4H0X A;  5D1U A;  4PKV A;  1YQY A;  4FK7 A;  4XM7 A;  2C8E E; 
#chains in the Genus database with same CATH homology
 4WF6 A;  5DZQ A;  1GIQ A;  3BW8 A;  1PWV A;  1PWP A;  2WN8 A;  4H0V A;  1ZXV A;  4H0Y A;  5BWM B;  1OJQ A;  4XM6 A;  4XM8 A;  2J3Z A;  4PKW A;  4FXQ A;  4PKT A;  2WN7 A;  3NTS A;  2WN5 A;  1G24 A;  1GZE A;  4FML A;  4ELN A;  4PKU A;  2C8B X;  2C8F E;  2WN6 A;  2GWL A;  4PKQ A;  2C8A A;  1JKY A;  1R4B A;  4TR5 A;  1J7N A;  3U0J A;  1GY0 A;  2C89 A;  4H0T A;  4H03 A;  1GIR A;  2A78 B;  2J3V A;  5H03 A;  1OG3 A;  1PWU A;  2BOV B;  2C8G A;  5D1T A;  1QS2 A;  1QS1 A;  4XSG B;  4PKR A;  1PWW A;  5H04 A;  2WN4 A;  4PKS A;  2C8C A;  4DV8 A;  1OG1 A;  1OJZ A;  4GY2 A;  1UZI A;  2J3X A;  2GWM A;  1GZF A;  3BUZ A;  1PWQ A;  1GXY A;  5GTT A;  4GF1 A;  1GXZ A;  2A9K B;  4XSH B;  1R45 A;  2C8H A;  1OG4 A;  5D1S A;  2C8D A;  4H0X A;  5D1U A;  4PKV A;  1YQY A;  4FK7 A;  4XM7 A;  2C8E E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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