2J3XA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 3.0 (mut-s361r)
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKRRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
molecule tags Toxin
total genus 151
structure length 430
sequence length 430
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3xA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3xA01
3BW8A 4XSGB 5GTTA 2A9KB 2C8EE 1QS2A 1GXZA 3U0JA 1PWWA 2WN4A 4PKRA 2WN8A 4XM6A 1G24A 4GF1A 4PKSA 2A78B 2GWMA 2J3XA 2GWLA 2J3ZA 2BOVB 4PKWA 1GY0A 5D1SA 1PWQA 1GIRA 1GXYA 1JKYA 1OJZA 2C89A 1OJQA 1OG1A 1OG4A 2C8GA 5DZQA 4DV8A 4WF6A 4ELNA 4XM8A 1GIQA 5H03A 1OG3A 1UZIA 4FMLA 2C8CA 4GY2A 1QS1A 5D1TA 1PWVA 1ZXVA 5D1UA 1R45A 4FK7A 5BWMB 2C8DA 4H03A 4TR5A 1YQYA 4H0YA 4XSHB 4PKTA 2J3VA 5H04A 3NTSA 2C8HA 2WN5A 2C8FE 1J7NA 4PKVA 2WN6A 4H0TA 1GZEA 4H0VA 1GZFA 3BUZA 2WN7A 4FXQA 1R4BA 2C8BX 2C8AA 1PWUA 1PWPA 4PKUA 4H0XA 4XM7A 4PKQA
chains in the Genus database with same CATH superfamily
3BW8A 4XSGB 5GTTA 2A9KB 2C8EE 1QS2A 1GXZA 3U0JA 1PWWA 2WN4A 4PKRA 2WN8A 4XM6A 1G24A 4GF1A 4PKSA 2A78B 2GWMA 2J3XA 2GWLA 2J3ZA 2BOVB 4PKWA 1GY0A 5D1SA 1PWQA 1GIRA 1GXYA 1JKYA 1OJZA 2C89A 1OJQA 1OG1A 1OG4A 2C8GA 5DZQA 4DV8A 4WF6A 4ELNA 4XM8A 1GIQA 5H03A 1OG3A 1UZIA 4FMLA 2C8CA 4GY2A 1QS1A 5D1TA 1PWVA 1ZXVA 5D1UA 1R45A 4FK7A 5BWMB 2C8DA 4H03A 4TR5A 1YQYA 4H0YA 4XSHB 4PKTA 2J3VA 5H04A 3NTSA 2C8HA 2WN5A 2C8FE 1J7NA 4PKVA 2WN6A 4H0TA 1GZEA 4H0VA 1GZFA 3BUZA 2WN7A 4FXQA 1R4BA 2C8BX 2C8AA 1PWUA 1PWPA 4PKUA 4H0XA 4XM7A 4PKQA
chains in the Genus database with same CATH topology
3BW8A 4XSGB 5GTTA 2A9KB 2C8EE 1QS2A 1GXZA 3U0JA 1PWWA 2WN4A 4PKRA 2WN8A 4XM6A 1G24A 4GF1A 4PKSA 2A78B 2GWMA 2J3XA 2GWLA 2J3ZA 2BOVB 4PKWA 1GY0A 5D1SA 1PWQA 1GIRA 1GXYA 1JKYA 1OJZA 2C89A 1OJQA 1OG1A 1OG4A 2C8GA 5DZQA 4DV8A 4WF6A 4ELNA 4XM8A 1GIQA 5H03A 1OG3A 1UZIA 4FMLA 2C8CA 4GY2A 1QS1A 5D1TA 1PWVA 1ZXVA 5D1UA 1R45A 4FK7A 5BWMB 2C8DA 4H03A 4TR5A 1YQYA 4H0YA 4XSHB 4PKTA 2J3VA 5H04A 3NTSA 2C8HA 2WN5A 2C8FE 1J7NA 4PKVA 2WN6A 4H0TA 1GZEA 4H0VA 1GZFA 3BUZA 2WN7A 4FXQA 1R4BA 2C8BX 2C8AA 1PWUA 1PWPA 4PKUA 4H0XA 4XM7A 4PKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BW8 A;  4XSG B;  5GTT A;  2A9K B;  2C8E E;  1QS2 A;  1GXZ A;  3U0J A;  1PWW A;  2WN4 A;  4PKR A;  2WN8 A;  4XM6 A;  1G24 A;  4GF1 A;  4PKS A;  2A78 B;  2GWM A;  2J3X A;  2GWL A;  2J3Z A;  2BOV B;  4PKW A;  1GY0 A;  5D1S A;  1PWQ A;  1GIR A;  1GXY A;  1JKY A;  1OJZ A;  2C89 A;  1OJQ A;  1OG1 A;  1OG4 A;  2C8G A;  5DZQ A;  4DV8 A;  4WF6 A;  4ELN A;  4XM8 A;  1GIQ A;  5H03 A;  1OG3 A;  1UZI A;  4FML A;  2C8C A;  4GY2 A;  1QS1 A;  5D1T A;  1PWV A;  1ZXV A;  5D1U A;  1R45 A;  4FK7 A;  5BWM B;  2C8D A;  4H03 A;  4TR5 A;  1YQY A;  4H0Y A;  4XSH B;  4PKT A;  2J3V A;  5H04 A;  3NTS A;  2C8H A;  2WN5 A;  2C8F E;  1J7N A;  4PKV A;  2WN6 A;  4H0T A;  1GZE A;  4H0V A;  1GZF A;  3BUZ A;  2WN7 A;  4FXQ A;  1R4B A;  2C8B X;  2C8A A;  1PWU A;  1PWP A;  4PKU A;  4H0X A;  4XM7 A;  4PKQ A; 
#chains in the Genus database with same CATH topology
 3BW8 A;  4XSG B;  5GTT A;  2A9K B;  2C8E E;  1QS2 A;  1GXZ A;  3U0J A;  1PWW A;  2WN4 A;  4PKR A;  2WN8 A;  4XM6 A;  1G24 A;  4GF1 A;  4PKS A;  2A78 B;  2GWM A;  2J3X A;  2GWL A;  2J3Z A;  2BOV B;  4PKW A;  1GY0 A;  5D1S A;  1PWQ A;  1GIR A;  1GXY A;  1JKY A;  1OJZ A;  2C89 A;  1OJQ A;  1OG1 A;  1OG4 A;  2C8G A;  5DZQ A;  4DV8 A;  4WF6 A;  4ELN A;  4XM8 A;  1GIQ A;  5H03 A;  1OG3 A;  1UZI A;  4FML A;  2C8C A;  4GY2 A;  1QS1 A;  5D1T A;  1PWV A;  1ZXV A;  5D1U A;  1R45 A;  4FK7 A;  5BWM B;  2C8D A;  4H03 A;  4TR5 A;  1YQY A;  4H0Y A;  4XSH B;  4PKT A;  2J3V A;  5H04 A;  3NTS A;  2C8H A;  2WN5 A;  2C8F E;  1J7N A;  4PKV A;  2WN6 A;  4H0T A;  1GZE A;  4H0V A;  1GZF A;  3BUZ A;  2WN7 A;  4FXQ A;  1R4B A;  2C8B X;  2C8A A;  1PWU A;  1PWP A;  4PKU A;  4H0X A;  4XM7 A;  4PKQ A; 
#chains in the Genus database with same CATH homology
 3BW8 A;  4XSG B;  5GTT A;  2A9K B;  2C8E E;  1QS2 A;  1GXZ A;  3U0J A;  1PWW A;  2WN4 A;  4PKR A;  2WN8 A;  4XM6 A;  1G24 A;  4GF1 A;  4PKS A;  2A78 B;  2GWM A;  2J3X A;  2GWL A;  2J3Z A;  2BOV B;  4PKW A;  1GY0 A;  5D1S A;  1PWQ A;  1GIR A;  1GXY A;  1JKY A;  1OJZ A;  2C89 A;  1OJQ A;  1OG1 A;  1OG4 A;  2C8G A;  5DZQ A;  4DV8 A;  4WF6 A;  4ELN A;  4XM8 A;  1GIQ A;  5H03 A;  1OG3 A;  1UZI A;  4FML A;  2C8C A;  4GY2 A;  1QS1 A;  5D1T A;  1PWV A;  1ZXV A;  5D1U A;  1R45 A;  4FK7 A;  5BWM B;  2C8D A;  4H03 A;  4TR5 A;  1YQY A;  4H0Y A;  4XSH B;  4PKT A;  2J3V A;  5H04 A;  3NTS A;  2C8H A;  2WN5 A;  2C8F E;  1J7N A;  4PKV A;  2WN6 A;  4H0T A;  1GZE A;  4H0V A;  1GZF A;  3BUZ A;  2WN7 A;  4FXQ A;  1R4B A;  2C8B X;  2C8A A;  1PWU A;  1PWP A;  4PKU A;  4H0X A;  4XM7 A;  4PKQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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