2J3XA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 3.0 (mut-s361r)
Total Genus 151
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
151
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKRRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
total genus 151
structure length 430
sequence length 430
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3xA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3xA01
4H03A 1PWWA 4XM7A 1GIRA 2C8GA 4GF1A 1J7NA 4PKRA 2WN8A 1QS2A 4PKQA 1R45A 2C8BX 4GY2A 2J3XA 1UZIA 1PWPA 5H04A 2WN5A 4PKVA 1GZFA 4XSHB 4PKUA 5D1UA 1R4BA 4FXQA 4WF6A 3U0JA 4PKSA 5DZQA 4XSGB 3BUZA 1OG3A 1OG4A 3BW8A 4XM8A 1GXYA 2J3ZA 2BOVB 1ZXVA 1GXZA 4FMLA 1GY0A 1YQYA 1PWQA 1OJZA 2C8FE 4TR5A 2GWMA 1OJQA 4H0XA 2A78B 2WN4A 4H0TA 2GWLA 5H03A 4XM6A 4PKTA 2C8DA 2C8CA 4FK7A 4DV8A 2WN6A 5BWMB 1PWVA 5D1TA 4H0YA 1GIQA 4ELNA 2C8HA 1PWUA 3NTSA 2C8EE 2C89A 5D1SA 2J3VA 1G24A 1GZEA 1QS1A 1JKYA 2C8AA 4H0VA 5GTTA 1OG1A 2A9KB 2WN7A 4PKWA
chains in the Genus database with same CATH superfamily
4H03A 1PWWA 4XM7A 1GIRA 2C8GA 4GF1A 1J7NA 4PKRA 2WN8A 1QS2A 4PKQA 1R45A 2C8BX 4GY2A 2J3XA 1UZIA 1PWPA 5H04A 2WN5A 4PKVA 1GZFA 4XSHB 4PKUA 5D1UA 1R4BA 4FXQA 4WF6A 3U0JA 4PKSA 5DZQA 4XSGB 3BUZA 1OG3A 1OG4A 3BW8A 4XM8A 1GXYA 2J3ZA 2BOVB 1ZXVA 1GXZA 4FMLA 1GY0A 1YQYA 1PWQA 1OJZA 2C8FE 4TR5A 2GWMA 1OJQA 4H0XA 2A78B 2WN4A 4H0TA 2GWLA 5H03A 4XM6A 4PKTA 2C8DA 2C8CA 4FK7A 4DV8A 2WN6A 5BWMB 1PWVA 5D1TA 4H0YA 1GIQA 4ELNA 2C8HA 1PWUA 3NTSA 2C8EE 2C89A 5D1SA 2J3VA 1G24A 1GZEA 1QS1A 1JKYA 2C8AA 4H0VA 5GTTA 1OG1A 2A9KB 2WN7A 4PKWA
chains in the Genus database with same CATH topology
4H03A 1PWWA 4XM7A 1GIRA 2C8GA 4GF1A 1J7NA 4PKRA 2WN8A 1QS2A 4PKQA 1R45A 2C8BX 4GY2A 2J3XA 1UZIA 1PWPA 5H04A 2WN5A 4PKVA 1GZFA 4XSHB 4PKUA 5D1UA 1R4BA 4FXQA 4WF6A 3U0JA 4PKSA 5DZQA 4XSGB 3BUZA 1OG3A 1OG4A 3BW8A 4XM8A 1GXYA 2J3ZA 2BOVB 1ZXVA 1GXZA 4FMLA 1GY0A 1YQYA 1PWQA 1OJZA 2C8FE 4TR5A 2GWMA 1OJQA 4H0XA 2A78B 2WN4A 4H0TA 2GWLA 5H03A 4XM6A 4PKTA 2C8DA 2C8CA 4FK7A 4DV8A 2WN6A 5BWMB 1PWVA 5D1TA 4H0YA 1GIQA 4ELNA 2C8HA 1PWUA 3NTSA 2C8EE 2C89A 5D1SA 2J3VA 1G24A 1GZEA 1QS1A 1JKYA 2C8AA 4H0VA 5GTTA 1OG1A 2A9KB 2WN7A 4PKWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H03 A;  1PWW A;  4XM7 A;  1GIR A;  2C8G A;  4GF1 A;  1J7N A;  4PKR A;  2WN8 A;  1QS2 A;  4PKQ A;  1R45 A;  2C8B X;  4GY2 A;  2J3X A;  1UZI A;  1PWP A;  5H04 A;  2WN5 A;  4PKV A;  1GZF A;  4XSH B;  4PKU A;  5D1U A;  1R4B A;  4FXQ A;  4WF6 A;  3U0J A;  4PKS A;  5DZQ A;  4XSG B;  3BUZ A;  1OG3 A;  1OG4 A;  3BW8 A;  4XM8 A;  1GXY A;  2J3Z A;  2BOV B;  1ZXV A;  1GXZ A;  4FML A;  1GY0 A;  1YQY A;  1PWQ A;  1OJZ A;  2C8F E;  4TR5 A;  2GWM A;  1OJQ A;  4H0X A;  2A78 B;  2WN4 A;  4H0T A;  2GWL A;  5H03 A;  4XM6 A;  4PKT A;  2C8D A;  2C8C A;  4FK7 A;  4DV8 A;  2WN6 A;  5BWM B;  1PWV A;  5D1T A;  4H0Y A;  1GIQ A;  4ELN A;  2C8H A;  1PWU A;  3NTS A;  2C8E E;  2C89 A;  5D1S A;  2J3V A;  1G24 A;  1GZE A;  1QS1 A;  1JKY A;  2C8A A;  4H0V A;  5GTT A;  1OG1 A;  2A9K B;  2WN7 A;  4PKW A; 
#chains in the Genus database with same CATH topology
 4H03 A;  1PWW A;  4XM7 A;  1GIR A;  2C8G A;  4GF1 A;  1J7N A;  4PKR A;  2WN8 A;  1QS2 A;  4PKQ A;  1R45 A;  2C8B X;  4GY2 A;  2J3X A;  1UZI A;  1PWP A;  5H04 A;  2WN5 A;  4PKV A;  1GZF A;  4XSH B;  4PKU A;  5D1U A;  1R4B A;  4FXQ A;  4WF6 A;  3U0J A;  4PKS A;  5DZQ A;  4XSG B;  3BUZ A;  1OG3 A;  1OG4 A;  3BW8 A;  4XM8 A;  1GXY A;  2J3Z A;  2BOV B;  1ZXV A;  1GXZ A;  4FML A;  1GY0 A;  1YQY A;  1PWQ A;  1OJZ A;  2C8F E;  4TR5 A;  2GWM A;  1OJQ A;  4H0X A;  2A78 B;  2WN4 A;  4H0T A;  2GWL A;  5H03 A;  4XM6 A;  4PKT A;  2C8D A;  2C8C A;  4FK7 A;  4DV8 A;  2WN6 A;  5BWM B;  1PWV A;  5D1T A;  4H0Y A;  1GIQ A;  4ELN A;  2C8H A;  1PWU A;  3NTS A;  2C8E E;  2C89 A;  5D1S A;  2J3V A;  1G24 A;  1GZE A;  1QS1 A;  1JKY A;  2C8A A;  4H0V A;  5GTT A;  1OG1 A;  2A9K B;  2WN7 A;  4PKW A; 
#chains in the Genus database with same CATH homology
 4H03 A;  1PWW A;  4XM7 A;  1GIR A;  2C8G A;  4GF1 A;  1J7N A;  4PKR A;  2WN8 A;  1QS2 A;  4PKQ A;  1R45 A;  2C8B X;  4GY2 A;  2J3X A;  1UZI A;  1PWP A;  5H04 A;  2WN5 A;  4PKV A;  1GZF A;  4XSH B;  4PKU A;  5D1U A;  1R4B A;  4FXQ A;  4WF6 A;  3U0J A;  4PKS A;  5DZQ A;  4XSG B;  3BUZ A;  1OG3 A;  1OG4 A;  3BW8 A;  4XM8 A;  1GXY A;  2J3Z A;  2BOV B;  1ZXV A;  1GXZ A;  4FML A;  1GY0 A;  1YQY A;  1PWQ A;  1OJZ A;  2C8F E;  4TR5 A;  2GWM A;  1OJQ A;  4H0X A;  2A78 B;  2WN4 A;  4H0T A;  2GWL A;  5H03 A;  4XM6 A;  4PKT A;  2C8D A;  2C8C A;  4FK7 A;  4DV8 A;  2WN6 A;  5BWM B;  1PWV A;  5D1T A;  4H0Y A;  1GIQ A;  4ELN A;  2C8H A;  1PWU A;  3NTS A;  2C8E E;  2C89 A;  5D1S A;  2J3V A;  1G24 A;  1GZE A;  1QS1 A;  1JKY A;  2C8A A;  4H0V A;  5GTT A;  1OG1 A;  2A9K B;  2WN7 A;  4PKW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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