2WN8A

Structural basis for substrate recognition in the enzymatic component of adp-ribosyltransferase toxin cdta from clostridium difficile
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
396
structure length
389
Chain Sequence
EWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKETIQNKLFKQDGFKDISLYEPGKGDEKPTPLLMHLKLPRNTGMLPYTVSTLIEQGYSIKIDKIVRIVIDGKHYIKAEASVVSSLDFKDDVSKGDSWGKANYNDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPVNNPNPELDSKITNIENALKREPIPTNLTVYRRSGPQEFGLTLTSPEYDFNKLENIDAFKSKWEGQALSYPNFISTSIGSVNMSAFAKRKIVLRITIPKGSPGAYLSAIPGEYEVLLNHGSKFKINKIDSYKDGTITKLIVDATLIP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Clostridium difficile
publication title Structural Basis for Substrate Recognition in the Enzymatic Component of Adp-Ribosyltransferase Toxin Cdta from Clostridium Difficile.
pubmed doi rcsb
molecule keywords ADP-RIBOSYLTRANSFERASE ENZYMATIC COMPONENT
total genus 125
structure length 389
sequence length 396
ec nomenclature
pdb deposition date 2009-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn8A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn8A01
1GIQA 2WN4A 1GZFA 1OG4A 4XM6A 4PKWA 2C8CA 2GWMA 2WN7A 4XM7A 2C89A 1GZEA 2WN6A 1G24A 1YQYA 5BWMB 1J7NA 4XM8A 4WF6A 1GXZA 2A9KB 3U0JA 2WN5A 4PKSA 5D1UA 1QS1A 4DV8A 4TR5A 1OG1A 4FK7A 4FMLA 2GWLA 4XSHB 2C8GA 2J3XA 2C8FE 1PWPA 4FXQA 2C8DA 5H04A 4GY2A 2C8BX 2C8EE 1UZIA 5H03A 4ELNA 1PWUA 4PKUA 4XSGB 2J3VA 4H0YA 2C8HA 1ZXVA 3NTSA 1JKYA 5D1SA 3BW8A 1GY0A 4PKVA 4GF1A 2A78B 1GIRA 1GXYA 1QS2A 1OJQA 4PKRA 1PWVA 1OG3A 1R4BA 2BOVB 1OJZA 3BUZA 2WN8A 1PWQA 5GTTA 5D1TA 2J3ZA 4H0XA 5DZQA 2C8AA 4PKQA 4H0TA 4H0VA 1R45A 4PKTA 1PWWA 4H03A
chains in the Genus database with same CATH superfamily
1GIQA 2WN4A 1GZFA 1OG4A 4XM6A 4PKWA 2C8CA 2GWMA 2WN7A 4XM7A 2C89A 1GZEA 2WN6A 1G24A 1YQYA 5BWMB 1J7NA 4XM8A 4WF6A 1GXZA 2A9KB 3U0JA 2WN5A 4PKSA 5D1UA 1QS1A 4DV8A 4TR5A 1OG1A 4FK7A 4FMLA 2GWLA 4XSHB 2C8GA 2J3XA 2C8FE 1PWPA 4FXQA 2C8DA 5H04A 4GY2A 2C8BX 2C8EE 1UZIA 5H03A 4ELNA 1PWUA 4PKUA 4XSGB 2J3VA 4H0YA 2C8HA 1ZXVA 3NTSA 1JKYA 5D1SA 3BW8A 1GY0A 4PKVA 4GF1A 2A78B 1GIRA 1GXYA 1QS2A 1OJQA 4PKRA 1PWVA 1OG3A 1R4BA 2BOVB 1OJZA 3BUZA 2WN8A 1PWQA 5GTTA 5D1TA 2J3ZA 4H0XA 5DZQA 2C8AA 4PKQA 4H0TA 4H0VA 1R45A 4PKTA 1PWWA 4H03A
chains in the Genus database with same CATH topology
1GIQA 2WN4A 1GZFA 1OG4A 4XM6A 4PKWA 2C8CA 2GWMA 2WN7A 4XM7A 2C89A 1GZEA 2WN6A 1G24A 1YQYA 5BWMB 1J7NA 4XM8A 4WF6A 1GXZA 2A9KB 3U0JA 2WN5A 4PKSA 5D1UA 1QS1A 4DV8A 4TR5A 1OG1A 4FK7A 4FMLA 2GWLA 4XSHB 2C8GA 2J3XA 2C8FE 1PWPA 4FXQA 2C8DA 5H04A 4GY2A 2C8BX 2C8EE 1UZIA 5H03A 4ELNA 1PWUA 4PKUA 4XSGB 2J3VA 4H0YA 2C8HA 1ZXVA 3NTSA 1JKYA 5D1SA 3BW8A 1GY0A 4PKVA 4GF1A 2A78B 1GIRA 1GXYA 1QS2A 1OJQA 4PKRA 1PWVA 1OG3A 1R4BA 2BOVB 1OJZA 3BUZA 2WN8A 1PWQA 5GTTA 5D1TA 2J3ZA 4H0XA 5DZQA 2C8AA 4PKQA 4H0TA 4H0VA 1R45A 4PKTA 1PWWA 4H03A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GIQ A;  2WN4 A;  1GZF A;  1OG4 A;  4XM6 A;  4PKW A;  2C8C A;  2GWM A;  2WN7 A;  4XM7 A;  2C89 A;  1GZE A;  2WN6 A;  1G24 A;  1YQY A;  5BWM B;  1J7N A;  4XM8 A;  4WF6 A;  1GXZ A;  2A9K B;  3U0J A;  2WN5 A;  4PKS A;  5D1U A;  1QS1 A;  4DV8 A;  4TR5 A;  1OG1 A;  4FK7 A;  4FML A;  2GWL A;  4XSH B;  2C8G A;  2J3X A;  2C8F E;  1PWP A;  4FXQ A;  2C8D A;  5H04 A;  4GY2 A;  2C8B X;  2C8E E;  1UZI A;  5H03 A;  4ELN A;  1PWU A;  4PKU A;  4XSG B;  2J3V A;  4H0Y A;  2C8H A;  1ZXV A;  3NTS A;  1JKY A;  5D1S A;  3BW8 A;  1GY0 A;  4PKV A;  4GF1 A;  2A78 B;  1GIR A;  1GXY A;  1QS2 A;  1OJQ A;  4PKR A;  1PWV A;  1OG3 A;  1R4B A;  2BOV B;  1OJZ A;  3BUZ A;  2WN8 A;  1PWQ A;  5GTT A;  5D1T A;  2J3Z A;  4H0X A;  5DZQ A;  2C8A A;  4PKQ A;  4H0T A;  4H0V A;  1R45 A;  4PKT A;  1PWW A;  4H03 A; 
#chains in the Genus database with same CATH topology
 1GIQ A;  2WN4 A;  1GZF A;  1OG4 A;  4XM6 A;  4PKW A;  2C8C A;  2GWM A;  2WN7 A;  4XM7 A;  2C89 A;  1GZE A;  2WN6 A;  1G24 A;  1YQY A;  5BWM B;  1J7N A;  4XM8 A;  4WF6 A;  1GXZ A;  2A9K B;  3U0J A;  2WN5 A;  4PKS A;  5D1U A;  1QS1 A;  4DV8 A;  4TR5 A;  1OG1 A;  4FK7 A;  4FML A;  2GWL A;  4XSH B;  2C8G A;  2J3X A;  2C8F E;  1PWP A;  4FXQ A;  2C8D A;  5H04 A;  4GY2 A;  2C8B X;  2C8E E;  1UZI A;  5H03 A;  4ELN A;  1PWU A;  4PKU A;  4XSG B;  2J3V A;  4H0Y A;  2C8H A;  1ZXV A;  3NTS A;  1JKY A;  5D1S A;  3BW8 A;  1GY0 A;  4PKV A;  4GF1 A;  2A78 B;  1GIR A;  1GXY A;  1QS2 A;  1OJQ A;  4PKR A;  1PWV A;  1OG3 A;  1R4B A;  2BOV B;  1OJZ A;  3BUZ A;  2WN8 A;  1PWQ A;  5GTT A;  5D1T A;  2J3Z A;  4H0X A;  5DZQ A;  2C8A A;  4PKQ A;  4H0T A;  4H0V A;  1R45 A;  4PKT A;  1PWW A;  4H03 A; 
#chains in the Genus database with same CATH homology
 1GIQ A;  2WN4 A;  1GZF A;  1OG4 A;  4XM6 A;  4PKW A;  2C8C A;  2GWM A;  2WN7 A;  4XM7 A;  2C89 A;  1GZE A;  2WN6 A;  1G24 A;  1YQY A;  5BWM B;  1J7N A;  4XM8 A;  4WF6 A;  1GXZ A;  2A9K B;  3U0J A;  2WN5 A;  4PKS A;  5D1U A;  1QS1 A;  4DV8 A;  4TR5 A;  1OG1 A;  4FK7 A;  4FML A;  2GWL A;  4XSH B;  2C8G A;  2J3X A;  2C8F E;  1PWP A;  4FXQ A;  2C8D A;  5H04 A;  4GY2 A;  2C8B X;  2C8E E;  1UZI A;  5H03 A;  4ELN A;  1PWU A;  4PKU A;  4XSG B;  2J3V A;  4H0Y A;  2C8H A;  1ZXV A;  3NTS A;  1JKY A;  5D1S A;  3BW8 A;  1GY0 A;  4PKV A;  4GF1 A;  2A78 B;  1GIR A;  1GXY A;  1QS2 A;  1OJQ A;  4PKR A;  1PWV A;  1OG3 A;  1R4B A;  2BOV B;  1OJZ A;  3BUZ A;  2WN8 A;  1PWQ A;  5GTT A;  5D1T A;  2J3Z A;  4H0X A;  5DZQ A;  2C8A A;  4PKQ A;  4H0T A;  4H0V A;  1R45 A;  4PKT A;  1PWW A;  4H03 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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