4H0VA

Crystal structure of nad+-ia(e378s)-actin complex
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
413
structure length
413
Chain Sequence
AFIERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGSYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/structural protein
source organism Clostridium perfringens
publication title Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
pubmed doi rcsb
molecule keywords Iota toxin component Ia
total genus 147
structure length 413
sequence length 413
ec nomenclature ec 2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase.
pdb deposition date 2012-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4h0vA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4h0vA01
1OG4A 4H0XA 5DZQA 1OJZA 2WN6A 1GXYA 4ELNA 2C8AA 1GZEA 1YQYA 1QS1A 2C8BX 4H0TA 2WN8A 5D1UA 5H03A 4FK7A 1PWVA 4PKVA 4GF1A 4XM6A 2J3XA 4FXQA 1R4BA 4TR5A 1OG1A 2C8CA 2J3ZA 4XSGB 3BUZA 2C8DA 1GXZA 2WN4A 1GZFA 2GWLA 1GIRA 4XM8A 4DV8A 2A9KB 4PKWA 4WF6A 1QS2A 4GY2A 3U0JA 5GTTA 1G24A 2C8GA 4H03A 5H04A 2J3VA 2GWMA 2C8EE 4H0VA 5BWMB 4H0YA 1OG3A 2WN5A 4PKSA 2BOVB 2C8HA 2C8FE 2WN7A 1OJQA 4PKRA 2A78B 4FMLA 1ZXVA 1GY0A 1PWQA 4XM7A 1GIQA 4PKQA 2C89A 1JKYA 1J7NA 1R45A 5D1SA 3BW8A 1PWWA 1PWUA 4XSHB 4PKTA 5D1TA 3NTSA 1UZIA 4PKUA 1PWPA
chains in the Genus database with same CATH superfamily
1OG4A 4H0XA 5DZQA 1OJZA 2WN6A 1GXYA 4ELNA 2C8AA 1GZEA 1YQYA 1QS1A 2C8BX 4H0TA 2WN8A 5D1UA 5H03A 4FK7A 1PWVA 4PKVA 4GF1A 4XM6A 2J3XA 4FXQA 1R4BA 4TR5A 1OG1A 2C8CA 2J3ZA 4XSGB 3BUZA 2C8DA 1GXZA 2WN4A 1GZFA 2GWLA 1GIRA 4XM8A 4DV8A 2A9KB 4PKWA 4WF6A 1QS2A 4GY2A 3U0JA 5GTTA 1G24A 2C8GA 4H03A 5H04A 2J3VA 2GWMA 2C8EE 4H0VA 5BWMB 4H0YA 1OG3A 2WN5A 4PKSA 2BOVB 2C8HA 2C8FE 2WN7A 1OJQA 4PKRA 2A78B 4FMLA 1ZXVA 1GY0A 1PWQA 4XM7A 1GIQA 4PKQA 2C89A 1JKYA 1J7NA 1R45A 5D1SA 3BW8A 1PWWA 1PWUA 4XSHB 4PKTA 5D1TA 3NTSA 1UZIA 4PKUA 1PWPA
chains in the Genus database with same CATH topology
1OG4A 4H0XA 5DZQA 1OJZA 2WN6A 1GXYA 4ELNA 2C8AA 1GZEA 1YQYA 1QS1A 2C8BX 4H0TA 2WN8A 5D1UA 5H03A 4FK7A 1PWVA 4PKVA 4GF1A 4XM6A 2J3XA 4FXQA 1R4BA 4TR5A 1OG1A 2C8CA 2J3ZA 4XSGB 3BUZA 2C8DA 1GXZA 2WN4A 1GZFA 2GWLA 1GIRA 4XM8A 4DV8A 2A9KB 4PKWA 4WF6A 1QS2A 4GY2A 3U0JA 5GTTA 1G24A 2C8GA 4H03A 5H04A 2J3VA 2GWMA 2C8EE 4H0VA 5BWMB 4H0YA 1OG3A 2WN5A 4PKSA 2BOVB 2C8HA 2C8FE 2WN7A 1OJQA 4PKRA 2A78B 4FMLA 1ZXVA 1GY0A 1PWQA 4XM7A 1GIQA 4PKQA 2C89A 1JKYA 1J7NA 1R45A 5D1SA 3BW8A 1PWWA 1PWUA 4XSHB 4PKTA 5D1TA 3NTSA 1UZIA 4PKUA 1PWPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OG4 A;  4H0X A;  5DZQ A;  1OJZ A;  2WN6 A;  1GXY A;  4ELN A;  2C8A A;  1GZE A;  1YQY A;  1QS1 A;  2C8B X;  4H0T A;  2WN8 A;  5D1U A;  5H03 A;  4FK7 A;  1PWV A;  4PKV A;  4GF1 A;  4XM6 A;  2J3X A;  4FXQ A;  1R4B A;  4TR5 A;  1OG1 A;  2C8C A;  2J3Z A;  4XSG B;  3BUZ A;  2C8D A;  1GXZ A;  2WN4 A;  1GZF A;  2GWL A;  1GIR A;  4XM8 A;  4DV8 A;  2A9K B;  4PKW A;  4WF6 A;  1QS2 A;  4GY2 A;  3U0J A;  5GTT A;  1G24 A;  2C8G A;  4H03 A;  5H04 A;  2J3V A;  2GWM A;  2C8E E;  4H0V A;  5BWM B;  4H0Y A;  1OG3 A;  2WN5 A;  4PKS A;  2BOV B;  2C8H A;  2C8F E;  2WN7 A;  1OJQ A;  4PKR A;  2A78 B;  4FML A;  1ZXV A;  1GY0 A;  1PWQ A;  4XM7 A;  1GIQ A;  4PKQ A;  2C89 A;  1JKY A;  1J7N A;  1R45 A;  5D1S A;  3BW8 A;  1PWW A;  1PWU A;  4XSH B;  4PKT A;  5D1T A;  3NTS A;  1UZI A;  4PKU A;  1PWP A; 
#chains in the Genus database with same CATH topology
 1OG4 A;  4H0X A;  5DZQ A;  1OJZ A;  2WN6 A;  1GXY A;  4ELN A;  2C8A A;  1GZE A;  1YQY A;  1QS1 A;  2C8B X;  4H0T A;  2WN8 A;  5D1U A;  5H03 A;  4FK7 A;  1PWV A;  4PKV A;  4GF1 A;  4XM6 A;  2J3X A;  4FXQ A;  1R4B A;  4TR5 A;  1OG1 A;  2C8C A;  2J3Z A;  4XSG B;  3BUZ A;  2C8D A;  1GXZ A;  2WN4 A;  1GZF A;  2GWL A;  1GIR A;  4XM8 A;  4DV8 A;  2A9K B;  4PKW A;  4WF6 A;  1QS2 A;  4GY2 A;  3U0J A;  5GTT A;  1G24 A;  2C8G A;  4H03 A;  5H04 A;  2J3V A;  2GWM A;  2C8E E;  4H0V A;  5BWM B;  4H0Y A;  1OG3 A;  2WN5 A;  4PKS A;  2BOV B;  2C8H A;  2C8F E;  2WN7 A;  1OJQ A;  4PKR A;  2A78 B;  4FML A;  1ZXV A;  1GY0 A;  1PWQ A;  4XM7 A;  1GIQ A;  4PKQ A;  2C89 A;  1JKY A;  1J7N A;  1R45 A;  5D1S A;  3BW8 A;  1PWW A;  1PWU A;  4XSH B;  4PKT A;  5D1T A;  3NTS A;  1UZI A;  4PKU A;  1PWP A; 
#chains in the Genus database with same CATH homology
 1OG4 A;  4H0X A;  5DZQ A;  1OJZ A;  2WN6 A;  1GXY A;  4ELN A;  2C8A A;  1GZE A;  1YQY A;  1QS1 A;  2C8B X;  4H0T A;  2WN8 A;  5D1U A;  5H03 A;  4FK7 A;  1PWV A;  4PKV A;  4GF1 A;  4XM6 A;  2J3X A;  4FXQ A;  1R4B A;  4TR5 A;  1OG1 A;  2C8C A;  2J3Z A;  4XSG B;  3BUZ A;  2C8D A;  1GXZ A;  2WN4 A;  1GZF A;  2GWL A;  1GIR A;  4XM8 A;  4DV8 A;  2A9K B;  4PKW A;  4WF6 A;  1QS2 A;  4GY2 A;  3U0J A;  5GTT A;  1G24 A;  2C8G A;  4H03 A;  5H04 A;  2J3V A;  2GWM A;  2C8E E;  4H0V A;  5BWM B;  4H0Y A;  1OG3 A;  2WN5 A;  4PKS A;  2BOV B;  2C8H A;  2C8F E;  2WN7 A;  1OJQ A;  4PKR A;  2A78 B;  4FML A;  1ZXV A;  1GY0 A;  1PWQ A;  4XM7 A;  1GIQ A;  4PKQ A;  2C89 A;  1JKY A;  1J7N A;  1R45 A;  5D1S A;  3BW8 A;  1PWW A;  1PWU A;  4XSH B;  4PKT A;  5D1T A;  3NTS A;  1UZI A;  4PKU A;  1PWP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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