4GY2A

Crystal structure of apo-ia-actin complex
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
411
structure length
411
Chain Sequence
IERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYEVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/structural protein
molecule keywords Iota toxin component Ia
publication title Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
pubmed doi rcsb
source organism Clostridium perfringens
total genus 137
structure length 411
sequence length 411
ec nomenclature ec 2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase.
pdb deposition date 2012-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4gy2A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4gy2A01
1GXYA 4H0TA 4GY2A 4XM7A 4XSHB 3U0JA 1GY0A 2A78B 1PWQA 2WN6A 4WF6A 4PKRA 5H03A 2WN5A 4FXQA 1PWWA 2BOVB 4PKWA 1YQYA 1PWUA 1OG3A 4PKVA 4XM8A 2WN7A 2WN4A 2C89A 1GZFA 1OJZA 2WN8A 2GWMA 1R45A 2C8EE 1OG1A 1GZEA 4H0YA 4FK7A 1PWVA 2A9KB 4XM6A 4PKQA 4FMLA 5BWMB 3BUZA 5D1UA 4DV8A 1OG4A 3BW8A 4GF1A 4H03A 4TR5A 2C8BX 1OJQA 5H04A 5DZQA 5D1SA 1J7NA 2C8AA 4ELNA 1ZXVA 5GTTA 4PKUA 5D1TA 3NTSA 1GIRA 2J3ZA 4PKTA 2C8CA 1GIQA 2GWLA 1PWPA 1QS1A 1QS2A 2J3VA 4H0XA 2C8FE 1JKYA 1GXZA 2C8GA 1UZIA 4H0VA 2J3XA 4PKSA 1G24A 1R4BA 4XSGB 2C8HA 2C8DA
chains in the Genus database with same CATH superfamily
1GXYA 4H0TA 4GY2A 4XM7A 4XSHB 3U0JA 1GY0A 2A78B 1PWQA 2WN6A 4WF6A 4PKRA 5H03A 2WN5A 4FXQA 1PWWA 2BOVB 4PKWA 1YQYA 1PWUA 1OG3A 4PKVA 4XM8A 2WN7A 2WN4A 2C89A 1GZFA 1OJZA 2WN8A 2GWMA 1R45A 2C8EE 1OG1A 1GZEA 4H0YA 4FK7A 1PWVA 2A9KB 4XM6A 4PKQA 4FMLA 5BWMB 3BUZA 5D1UA 4DV8A 1OG4A 3BW8A 4GF1A 4H03A 4TR5A 2C8BX 1OJQA 5H04A 5DZQA 5D1SA 1J7NA 2C8AA 4ELNA 1ZXVA 5GTTA 4PKUA 5D1TA 3NTSA 1GIRA 2J3ZA 4PKTA 2C8CA 1GIQA 2GWLA 1PWPA 1QS1A 1QS2A 2J3VA 4H0XA 2C8FE 1JKYA 1GXZA 2C8GA 1UZIA 4H0VA 2J3XA 4PKSA 1G24A 1R4BA 4XSGB 2C8HA 2C8DA
chains in the Genus database with same CATH topology
1GXYA 4H0TA 4GY2A 4XM7A 4XSHB 3U0JA 1GY0A 2A78B 1PWQA 2WN6A 4WF6A 4PKRA 5H03A 2WN5A 4FXQA 1PWWA 2BOVB 4PKWA 1YQYA 1PWUA 1OG3A 4PKVA 4XM8A 2WN7A 2WN4A 2C89A 1GZFA 1OJZA 2WN8A 2GWMA 1R45A 2C8EE 1OG1A 1GZEA 4H0YA 4FK7A 1PWVA 2A9KB 4XM6A 4PKQA 4FMLA 5BWMB 3BUZA 5D1UA 4DV8A 1OG4A 3BW8A 4GF1A 4H03A 4TR5A 2C8BX 1OJQA 5H04A 5DZQA 5D1SA 1J7NA 2C8AA 4ELNA 1ZXVA 5GTTA 4PKUA 5D1TA 3NTSA 1GIRA 2J3ZA 4PKTA 2C8CA 1GIQA 2GWLA 1PWPA 1QS1A 1QS2A 2J3VA 4H0XA 2C8FE 1JKYA 1GXZA 2C8GA 1UZIA 4H0VA 2J3XA 4PKSA 1G24A 1R4BA 4XSGB 2C8HA 2C8DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GXY A;  4H0T A;  4GY2 A;  4XM7 A;  4XSH B;  3U0J A;  1GY0 A;  2A78 B;  1PWQ A;  2WN6 A;  4WF6 A;  4PKR A;  5H03 A;  2WN5 A;  4FXQ A;  1PWW A;  2BOV B;  4PKW A;  1YQY A;  1PWU A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  2WN4 A;  2C89 A;  1GZF A;  1OJZ A;  2WN8 A;  2GWM A;  1R45 A;  2C8E E;  1OG1 A;  1GZE A;  4H0Y A;  4FK7 A;  1PWV A;  2A9K B;  4XM6 A;  4PKQ A;  4FML A;  5BWM B;  3BUZ A;  5D1U A;  4DV8 A;  1OG4 A;  3BW8 A;  4GF1 A;  4H03 A;  4TR5 A;  2C8B X;  1OJQ A;  5H04 A;  5DZQ A;  5D1S A;  1J7N A;  2C8A A;  4ELN A;  1ZXV A;  5GTT A;  4PKU A;  5D1T A;  3NTS A;  1GIR A;  2J3Z A;  4PKT A;  2C8C A;  1GIQ A;  2GWL A;  1PWP A;  1QS1 A;  1QS2 A;  2J3V A;  4H0X A;  2C8F E;  1JKY A;  1GXZ A;  2C8G A;  1UZI A;  4H0V A;  2J3X A;  4PKS A;  1G24 A;  1R4B A;  4XSG B;  2C8H A;  2C8D A; 
#chains in the Genus database with same CATH topology
 1GXY A;  4H0T A;  4GY2 A;  4XM7 A;  4XSH B;  3U0J A;  1GY0 A;  2A78 B;  1PWQ A;  2WN6 A;  4WF6 A;  4PKR A;  5H03 A;  2WN5 A;  4FXQ A;  1PWW A;  2BOV B;  4PKW A;  1YQY A;  1PWU A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  2WN4 A;  2C89 A;  1GZF A;  1OJZ A;  2WN8 A;  2GWM A;  1R45 A;  2C8E E;  1OG1 A;  1GZE A;  4H0Y A;  4FK7 A;  1PWV A;  2A9K B;  4XM6 A;  4PKQ A;  4FML A;  5BWM B;  3BUZ A;  5D1U A;  4DV8 A;  1OG4 A;  3BW8 A;  4GF1 A;  4H03 A;  4TR5 A;  2C8B X;  1OJQ A;  5H04 A;  5DZQ A;  5D1S A;  1J7N A;  2C8A A;  4ELN A;  1ZXV A;  5GTT A;  4PKU A;  5D1T A;  3NTS A;  1GIR A;  2J3Z A;  4PKT A;  2C8C A;  1GIQ A;  2GWL A;  1PWP A;  1QS1 A;  1QS2 A;  2J3V A;  4H0X A;  2C8F E;  1JKY A;  1GXZ A;  2C8G A;  1UZI A;  4H0V A;  2J3X A;  4PKS A;  1G24 A;  1R4B A;  4XSG B;  2C8H A;  2C8D A; 
#chains in the Genus database with same CATH homology
 1GXY A;  4H0T A;  4GY2 A;  4XM7 A;  4XSH B;  3U0J A;  1GY0 A;  2A78 B;  1PWQ A;  2WN6 A;  4WF6 A;  4PKR A;  5H03 A;  2WN5 A;  4FXQ A;  1PWW A;  2BOV B;  4PKW A;  1YQY A;  1PWU A;  1OG3 A;  4PKV A;  4XM8 A;  2WN7 A;  2WN4 A;  2C89 A;  1GZF A;  1OJZ A;  2WN8 A;  2GWM A;  1R45 A;  2C8E E;  1OG1 A;  1GZE A;  4H0Y A;  4FK7 A;  1PWV A;  2A9K B;  4XM6 A;  4PKQ A;  4FML A;  5BWM B;  3BUZ A;  5D1U A;  4DV8 A;  1OG4 A;  3BW8 A;  4GF1 A;  4H03 A;  4TR5 A;  2C8B X;  1OJQ A;  5H04 A;  5DZQ A;  5D1S A;  1J7N A;  2C8A A;  4ELN A;  1ZXV A;  5GTT A;  4PKU A;  5D1T A;  3NTS A;  1GIR A;  2J3Z A;  4PKT A;  2C8C A;  1GIQ A;  2GWL A;  1PWP A;  1QS1 A;  1QS2 A;  2J3V A;  4H0X A;  2C8F E;  1JKY A;  1GXZ A;  2C8G A;  1UZI A;  4H0V A;  2J3X A;  4PKS A;  1G24 A;  1R4B A;  4XSG B;  2C8H A;  2C8D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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