4H0YA

Crystal structure of nad+-ia(e380s)-actin complex
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
413
structure length
413
Chain Sequence
AFIERPEDFLKDKENAIQWEKKEAERVEKNLDTLEKEALELYKKDSEQISNYSQTRQYFYDYQIESNPREKEYKNLRNAISKNKIDKPINVYYFESPEKFAFNKEIRTENQNEISLEKFNELKETIQDKLFKQDGFKDVSLYEPGNGDEKPTPLLIHLKLPKNTGMLPYINSNDVKTLIEQDYSIKIDKIVRIVIEGKQYIKAEASIVNSLDFKDDVSKGDLWGKENYSDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPLNNPNPELDSKVNNIENALKLTPIPSNLIVYRRSGPQEFGLTLTSPEYDFNKIENIDAFKEKWEGKVITYPNFISTSIGSVNMSAFAKRKIILRINIPKDSPGAYLSAIPGYAGEYSVLLNHGSKFKINKVDSYKDGTVTKLILDATLIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin/structural protein
molecule keywords Iota toxin component Ia
publication title Arginine ADP-ribosylation mechanism based on structural snapshots of iota-toxin and actin complex
pubmed doi rcsb
source organism Clostridium perfringens
total genus 143
structure length 413
sequence length 413
ec nomenclature ec 2.4.2.31: NAD(+)--protein-arginine ADP-ribosyltransferase.
pdb deposition date 2012-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4h0yA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4h0yA01
2GWLA 4PKVA 3NTSA 1GZEA 1UZIA 1ZXVA 2WN6A 5D1TA 2WN7A 2A9KB 4PKUA 1GXZA 2WN8A 4PKSA 4H0YA 3BW8A 5D1SA 2GWMA 2C8HA 5BWMB 1PWPA 4XM7A 1OG4A 2J3VA 5D1UA 4PKTA 1PWVA 1GXYA 4H03A 1R4BA 5H04A 3BUZA 2C8DA 3U0JA 2A78B 1R45A 2C8EE 1PWWA 1QS1A 4FMLA 4FXQA 5DZQA 5H03A 2BOVB 1PWUA 1OJQA 1GIQA 4WF6A 1PWQA 4XM8A 4FK7A 1JKYA 1J7NA 4H0TA 2C8FE 1OG3A 1QS2A 2C8BX 4H0XA 2C8GA 1GY0A 2J3ZA 2C89A 4XSHB 1YQYA 1OJZA 5GTTA 2C8CA 4PKWA 4GY2A 4PKQA 2J3XA 4PKRA 2C8AA 1GIRA 2WN4A 4XM6A 1G24A 4XSGB 4ELNA 4GF1A 4H0VA 1GZFA 1OG1A 4DV8A 4TR5A 2WN5A
chains in the Genus database with same CATH superfamily
2GWLA 4PKVA 3NTSA 1GZEA 1UZIA 1ZXVA 2WN6A 5D1TA 2WN7A 2A9KB 4PKUA 1GXZA 2WN8A 4PKSA 4H0YA 3BW8A 5D1SA 2GWMA 2C8HA 5BWMB 1PWPA 4XM7A 1OG4A 2J3VA 5D1UA 4PKTA 1PWVA 1GXYA 4H03A 1R4BA 5H04A 3BUZA 2C8DA 3U0JA 2A78B 1R45A 2C8EE 1PWWA 1QS1A 4FMLA 4FXQA 5DZQA 5H03A 2BOVB 1PWUA 1OJQA 1GIQA 4WF6A 1PWQA 4XM8A 4FK7A 1JKYA 1J7NA 4H0TA 2C8FE 1OG3A 1QS2A 2C8BX 4H0XA 2C8GA 1GY0A 2J3ZA 2C89A 4XSHB 1YQYA 1OJZA 5GTTA 2C8CA 4PKWA 4GY2A 4PKQA 2J3XA 4PKRA 2C8AA 1GIRA 2WN4A 4XM6A 1G24A 4XSGB 4ELNA 4GF1A 4H0VA 1GZFA 1OG1A 4DV8A 4TR5A 2WN5A
chains in the Genus database with same CATH topology
2GWLA 4PKVA 3NTSA 1GZEA 1UZIA 1ZXVA 2WN6A 5D1TA 2WN7A 2A9KB 4PKUA 1GXZA 2WN8A 4PKSA 4H0YA 3BW8A 5D1SA 2GWMA 2C8HA 5BWMB 1PWPA 4XM7A 1OG4A 2J3VA 5D1UA 4PKTA 1PWVA 1GXYA 4H03A 1R4BA 5H04A 3BUZA 2C8DA 3U0JA 2A78B 1R45A 2C8EE 1PWWA 1QS1A 4FMLA 4FXQA 5DZQA 5H03A 2BOVB 1PWUA 1OJQA 1GIQA 4WF6A 1PWQA 4XM8A 4FK7A 1JKYA 1J7NA 4H0TA 2C8FE 1OG3A 1QS2A 2C8BX 4H0XA 2C8GA 1GY0A 2J3ZA 2C89A 4XSHB 1YQYA 1OJZA 5GTTA 2C8CA 4PKWA 4GY2A 4PKQA 2J3XA 4PKRA 2C8AA 1GIRA 2WN4A 4XM6A 1G24A 4XSGB 4ELNA 4GF1A 4H0VA 1GZFA 1OG1A 4DV8A 4TR5A 2WN5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GWL A;  4PKV A;  3NTS A;  1GZE A;  1UZI A;  1ZXV A;  2WN6 A;  5D1T A;  2WN7 A;  2A9K B;  4PKU A;  1GXZ A;  2WN8 A;  4PKS A;  4H0Y A;  3BW8 A;  5D1S A;  2GWM A;  2C8H A;  5BWM B;  1PWP A;  4XM7 A;  1OG4 A;  2J3V A;  5D1U A;  4PKT A;  1PWV A;  1GXY A;  4H03 A;  1R4B A;  5H04 A;  3BUZ A;  2C8D A;  3U0J A;  2A78 B;  1R45 A;  2C8E E;  1PWW A;  1QS1 A;  4FML A;  4FXQ A;  5DZQ A;  5H03 A;  2BOV B;  1PWU A;  1OJQ A;  1GIQ A;  4WF6 A;  1PWQ A;  4XM8 A;  4FK7 A;  1JKY A;  1J7N A;  4H0T A;  2C8F E;  1OG3 A;  1QS2 A;  2C8B X;  4H0X A;  2C8G A;  1GY0 A;  2J3Z A;  2C89 A;  4XSH B;  1YQY A;  1OJZ A;  5GTT A;  2C8C A;  4PKW A;  4GY2 A;  4PKQ A;  2J3X A;  4PKR A;  2C8A A;  1GIR A;  2WN4 A;  4XM6 A;  1G24 A;  4XSG B;  4ELN A;  4GF1 A;  4H0V A;  1GZF A;  1OG1 A;  4DV8 A;  4TR5 A;  2WN5 A; 
#chains in the Genus database with same CATH topology
 2GWL A;  4PKV A;  3NTS A;  1GZE A;  1UZI A;  1ZXV A;  2WN6 A;  5D1T A;  2WN7 A;  2A9K B;  4PKU A;  1GXZ A;  2WN8 A;  4PKS A;  4H0Y A;  3BW8 A;  5D1S A;  2GWM A;  2C8H A;  5BWM B;  1PWP A;  4XM7 A;  1OG4 A;  2J3V A;  5D1U A;  4PKT A;  1PWV A;  1GXY A;  4H03 A;  1R4B A;  5H04 A;  3BUZ A;  2C8D A;  3U0J A;  2A78 B;  1R45 A;  2C8E E;  1PWW A;  1QS1 A;  4FML A;  4FXQ A;  5DZQ A;  5H03 A;  2BOV B;  1PWU A;  1OJQ A;  1GIQ A;  4WF6 A;  1PWQ A;  4XM8 A;  4FK7 A;  1JKY A;  1J7N A;  4H0T A;  2C8F E;  1OG3 A;  1QS2 A;  2C8B X;  4H0X A;  2C8G A;  1GY0 A;  2J3Z A;  2C89 A;  4XSH B;  1YQY A;  1OJZ A;  5GTT A;  2C8C A;  4PKW A;  4GY2 A;  4PKQ A;  2J3X A;  4PKR A;  2C8A A;  1GIR A;  2WN4 A;  4XM6 A;  1G24 A;  4XSG B;  4ELN A;  4GF1 A;  4H0V A;  1GZF A;  1OG1 A;  4DV8 A;  4TR5 A;  2WN5 A; 
#chains in the Genus database with same CATH homology
 2GWL A;  4PKV A;  3NTS A;  1GZE A;  1UZI A;  1ZXV A;  2WN6 A;  5D1T A;  2WN7 A;  2A9K B;  4PKU A;  1GXZ A;  2WN8 A;  4PKS A;  4H0Y A;  3BW8 A;  5D1S A;  2GWM A;  2C8H A;  5BWM B;  1PWP A;  4XM7 A;  1OG4 A;  2J3V A;  5D1U A;  4PKT A;  1PWV A;  1GXY A;  4H03 A;  1R4B A;  5H04 A;  3BUZ A;  2C8D A;  3U0J A;  2A78 B;  1R45 A;  2C8E E;  1PWW A;  1QS1 A;  4FML A;  4FXQ A;  5DZQ A;  5H03 A;  2BOV B;  1PWU A;  1OJQ A;  1GIQ A;  4WF6 A;  1PWQ A;  4XM8 A;  4FK7 A;  1JKY A;  1J7N A;  4H0T A;  2C8F E;  1OG3 A;  1QS2 A;  2C8B X;  4H0X A;  2C8G A;  1GY0 A;  2J3Z A;  2C89 A;  4XSH B;  1YQY A;  1OJZ A;  5GTT A;  2C8C A;  4PKW A;  4GY2 A;  4PKQ A;  2J3X A;  4PKR A;  2C8A A;  1GIR A;  2WN4 A;  4XM6 A;  1G24 A;  4XSG B;  4ELN A;  4GF1 A;  4H0V A;  1GZF A;  1OG1 A;  4DV8 A;  4TR5 A;  2WN5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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