5BWMB

The complex structure of c3cer exoenzyme and gdp bound rhoa (nadh-bound state)
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
205
structure length
205
Chain Sequence
KYKLCTNKEEADAWGKKQFNKWSKEEKSAIRDYTKNARPYNEFLRMHAGKLDSDPTMKKKIESLDKALNRKEAKVNDNIKVYRGDDAWIFGKEYDNSIIKNGKVDREKFKEIQKKFQGKTTTEFGYISTSILIDAGYAKTRPVMTEFKVGSGTHGAYMNSDDLTAYPGQYELLLPRNTVYKIEKIYIAIDNNTQKEQIKVEATIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/transferase
source organism Homo sapiens
publication title Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.
pubmed doi rcsb
molecule keywords Transforming protein RhoA
total genus 60
structure length 205
sequence length 205
ec nomenclature
pdb deposition date 2015-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5bwmB00
1OJQA 4FXQA 1GIQA 5H03A 1ZXVA 4GY2A 5D1UA 2J3ZA 2C8FE 4H0YA 4XSGB 3BW8A 1PWQA 2C8GA 4PKVA 1JKYA 1YQYA 2C8HA 2C89A 2WN7A 4XSHB 1UZIA 2BOVB 3NTSA 4GF1A 1GXZA 4XM7A 2J3VA 4H0VA 4H03A 1G24A 4DV8A 5D1SA 2C8BX 2A78B 4FMLA 2C8EE 2WN8A 4XM6A 1PWVA 1OG3A 5BWMB 4XM8A 2C8AA 5DZQA 4PKRA 1R45A 1J7NA 4H0TA 1OJZA 4PKTA 1QS2A 4PKQA 2GWMA 4PKUA 3BUZA 4PKWA 2C8DA 4PKSA 2WN6A 1GZFA 1R4BA 1GY0A 1PWUA 4FK7A 3U0JA 1OG4A 4TR5A 1GIRA 1PWPA 1GXYA 2GWLA 1GZEA 4H0XA 1PWWA 5D1TA 4ELNA 2WN5A 1OG1A 2WN4A 2J3XA 2A9KB 4WF6A 1QS1A 2C8CA 5H04A 5GTTA
chains in the Genus database with same CATH superfamily
1OJQA 4FXQA 1GIQA 5H03A 1ZXVA 4GY2A 5D1UA 2J3ZA 2C8FE 4H0YA 4XSGB 3BW8A 1PWQA 2C8GA 4PKVA 1JKYA 1YQYA 2C8HA 2C89A 2WN7A 4XSHB 1UZIA 2BOVB 3NTSA 4GF1A 1GXZA 4XM7A 2J3VA 4H0VA 4H03A 1G24A 4DV8A 5D1SA 2C8BX 2A78B 4FMLA 2C8EE 2WN8A 4XM6A 1PWVA 1OG3A 5BWMB 4XM8A 2C8AA 5DZQA 4PKRA 1R45A 1J7NA 4H0TA 1OJZA 4PKTA 1QS2A 4PKQA 2GWMA 4PKUA 3BUZA 4PKWA 2C8DA 4PKSA 2WN6A 1GZFA 1R4BA 1GY0A 1PWUA 4FK7A 3U0JA 1OG4A 4TR5A 1GIRA 1PWPA 1GXYA 2GWLA 1GZEA 4H0XA 1PWWA 5D1TA 4ELNA 2WN5A 1OG1A 2WN4A 2J3XA 2A9KB 4WF6A 1QS1A 2C8CA 5H04A 5GTTA
chains in the Genus database with same CATH topology
1OJQA 4FXQA 1GIQA 5H03A 1ZXVA 4GY2A 5D1UA 2J3ZA 2C8FE 4H0YA 4XSGB 3BW8A 1PWQA 2C8GA 4PKVA 1JKYA 1YQYA 2C8HA 2C89A 2WN7A 4XSHB 1UZIA 2BOVB 3NTSA 4GF1A 1GXZA 4XM7A 2J3VA 4H0VA 4H03A 1G24A 4DV8A 5D1SA 2C8BX 2A78B 4FMLA 2C8EE 2WN8A 4XM6A 1PWVA 1OG3A 5BWMB 4XM8A 2C8AA 5DZQA 4PKRA 1R45A 1J7NA 4H0TA 1OJZA 4PKTA 1QS2A 4PKQA 2GWMA 4PKUA 3BUZA 4PKWA 2C8DA 4PKSA 2WN6A 1GZFA 1R4BA 1GY0A 1PWUA 4FK7A 3U0JA 1OG4A 4TR5A 1GIRA 1PWPA 1GXYA 2GWLA 1GZEA 4H0XA 1PWWA 5D1TA 4ELNA 2WN5A 1OG1A 2WN4A 2J3XA 2A9KB 4WF6A 1QS1A 2C8CA 5H04A 5GTTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OJQ A;  4FXQ A;  1GIQ A;  5H03 A;  1ZXV A;  4GY2 A;  5D1U A;  2J3Z A;  2C8F E;  4H0Y A;  4XSG B;  3BW8 A;  1PWQ A;  2C8G A;  4PKV A;  1JKY A;  1YQY A;  2C8H A;  2C89 A;  2WN7 A;  4XSH B;  1UZI A;  2BOV B;  3NTS A;  4GF1 A;  1GXZ A;  4XM7 A;  2J3V A;  4H0V A;  4H03 A;  1G24 A;  4DV8 A;  5D1S A;  2C8B X;  2A78 B;  4FML A;  2C8E E;  2WN8 A;  4XM6 A;  1PWV A;  1OG3 A;  5BWM B;  4XM8 A;  2C8A A;  5DZQ A;  4PKR A;  1R45 A;  1J7N A;  4H0T A;  1OJZ A;  4PKT A;  1QS2 A;  4PKQ A;  2GWM A;  4PKU A;  3BUZ A;  4PKW A;  2C8D A;  4PKS A;  2WN6 A;  1GZF A;  1R4B A;  1GY0 A;  1PWU A;  4FK7 A;  3U0J A;  1OG4 A;  4TR5 A;  1GIR A;  1PWP A;  1GXY A;  2GWL A;  1GZE A;  4H0X A;  1PWW A;  5D1T A;  4ELN A;  2WN5 A;  1OG1 A;  2WN4 A;  2J3X A;  2A9K B;  4WF6 A;  1QS1 A;  2C8C A;  5H04 A;  5GTT A; 
#chains in the Genus database with same CATH topology
 1OJQ A;  4FXQ A;  1GIQ A;  5H03 A;  1ZXV A;  4GY2 A;  5D1U A;  2J3Z A;  2C8F E;  4H0Y A;  4XSG B;  3BW8 A;  1PWQ A;  2C8G A;  4PKV A;  1JKY A;  1YQY A;  2C8H A;  2C89 A;  2WN7 A;  4XSH B;  1UZI A;  2BOV B;  3NTS A;  4GF1 A;  1GXZ A;  4XM7 A;  2J3V A;  4H0V A;  4H03 A;  1G24 A;  4DV8 A;  5D1S A;  2C8B X;  2A78 B;  4FML A;  2C8E E;  2WN8 A;  4XM6 A;  1PWV A;  1OG3 A;  5BWM B;  4XM8 A;  2C8A A;  5DZQ A;  4PKR A;  1R45 A;  1J7N A;  4H0T A;  1OJZ A;  4PKT A;  1QS2 A;  4PKQ A;  2GWM A;  4PKU A;  3BUZ A;  4PKW A;  2C8D A;  4PKS A;  2WN6 A;  1GZF A;  1R4B A;  1GY0 A;  1PWU A;  4FK7 A;  3U0J A;  1OG4 A;  4TR5 A;  1GIR A;  1PWP A;  1GXY A;  2GWL A;  1GZE A;  4H0X A;  1PWW A;  5D1T A;  4ELN A;  2WN5 A;  1OG1 A;  2WN4 A;  2J3X A;  2A9K B;  4WF6 A;  1QS1 A;  2C8C A;  5H04 A;  5GTT A; 
#chains in the Genus database with same CATH homology
 1OJQ A;  4FXQ A;  1GIQ A;  5H03 A;  1ZXV A;  4GY2 A;  5D1U A;  2J3Z A;  2C8F E;  4H0Y A;  4XSG B;  3BW8 A;  1PWQ A;  2C8G A;  4PKV A;  1JKY A;  1YQY A;  2C8H A;  2C89 A;  2WN7 A;  4XSH B;  1UZI A;  2BOV B;  3NTS A;  4GF1 A;  1GXZ A;  4XM7 A;  2J3V A;  4H0V A;  4H03 A;  1G24 A;  4DV8 A;  5D1S A;  2C8B X;  2A78 B;  4FML A;  2C8E E;  2WN8 A;  4XM6 A;  1PWV A;  1OG3 A;  5BWM B;  4XM8 A;  2C8A A;  5DZQ A;  4PKR A;  1R45 A;  1J7N A;  4H0T A;  1OJZ A;  4PKT A;  1QS2 A;  4PKQ A;  2GWM A;  4PKU A;  3BUZ A;  4PKW A;  2C8D A;  4PKS A;  2WN6 A;  1GZF A;  1R4B A;  1GY0 A;  1PWU A;  4FK7 A;  3U0J A;  1OG4 A;  4TR5 A;  1GIR A;  1PWP A;  1GXY A;  2GWL A;  1GZE A;  4H0X A;  1PWW A;  5D1T A;  4ELN A;  2WN5 A;  1OG1 A;  2WN4 A;  2J3X A;  2A9K B;  4WF6 A;  1QS1 A;  2C8C A;  5H04 A;  5GTT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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