5BWMB

The complex structure of c3cer exoenzyme and gdp bound rhoa (nadh-bound state)
Total Genus 60
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
205
structure length
205
Chain Sequence
KYKLCTNKEEADAWGKKQFNKWSKEEKSAIRDYTKNARPYNEFLRMHAGKLDSDPTMKKKIESLDKALNRKEAKVNDNIKVYRGDDAWIFGKEYDNSIIKNGKVDREKFKEIQKKFQGKTTTEFGYISTSILIDAGYAKTRPVMTEFKVGSGTHGAYMNSDDLTAYPGQYELLLPRNTVYKIEKIYIAIDNNTQKEQIKVEATIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Transforming protein RhoA
publication title Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Signaling protein/transferase
total genus 60
structure length 205
sequence length 205
ec nomenclature
pdb deposition date 2015-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5bwmB00
5D1SA 4H0VA 4FMLA 3BUZA 4ELNA 4PKTA 1PWVA 2A78B 2C8HA 4H0YA 2WN8A 1PWPA 4XM7A 1OG1A 4TR5A 4WF6A 1GIQA 2J3XA 2BOVB 2WN5A 1G24A 1GIRA 2GWLA 1YQYA 1GY0A 3U0JA 2J3ZA 1PWUA 4H0XA 1GZEA 2J3VA 1QS1A 1OJQA 4XSHB 1PWWA 3NTSA 1R4BA 4DV8A 1GXZA 2C8AA 5D1UA 1J7NA 4H0TA 5D1TA 1OG3A 1PWQA 4PKQA 2GWMA 3BW8A 1GXYA 5H04A 4PKVA 4FXQA 2C8EE 2C8CA 4XM8A 2C89A 4GY2A 2C8BX 5H03A 1OG4A 1ZXVA 1OJZA 1QS2A 2WN6A 2C8GA 4XM6A 4FK7A 4PKSA 5DZQA 2C8FE 4H03A 5BWMB 4PKUA 4PKRA 4PKWA 1GZFA 5GTTA 2C8DA 1UZIA 2A9KB 1JKYA 4XSGB 2WN7A 2WN4A 1R45A 4GF1A
chains in the Genus database with same CATH superfamily
5D1SA 4H0VA 4FMLA 3BUZA 4ELNA 4PKTA 1PWVA 2A78B 2C8HA 4H0YA 2WN8A 1PWPA 4XM7A 1OG1A 4TR5A 4WF6A 1GIQA 2J3XA 2BOVB 2WN5A 1G24A 1GIRA 2GWLA 1YQYA 1GY0A 3U0JA 2J3ZA 1PWUA 4H0XA 1GZEA 2J3VA 1QS1A 1OJQA 4XSHB 1PWWA 3NTSA 1R4BA 4DV8A 1GXZA 2C8AA 5D1UA 1J7NA 4H0TA 5D1TA 1OG3A 1PWQA 4PKQA 2GWMA 3BW8A 1GXYA 5H04A 4PKVA 4FXQA 2C8EE 2C8CA 4XM8A 2C89A 4GY2A 2C8BX 5H03A 1OG4A 1ZXVA 1OJZA 1QS2A 2WN6A 2C8GA 4XM6A 4FK7A 4PKSA 5DZQA 2C8FE 4H03A 5BWMB 4PKUA 4PKRA 4PKWA 1GZFA 5GTTA 2C8DA 1UZIA 2A9KB 1JKYA 4XSGB 2WN7A 2WN4A 1R45A 4GF1A
chains in the Genus database with same CATH topology
5D1SA 4H0VA 4FMLA 3BUZA 4ELNA 4PKTA 1PWVA 2A78B 2C8HA 4H0YA 2WN8A 1PWPA 4XM7A 1OG1A 4TR5A 4WF6A 1GIQA 2J3XA 2BOVB 2WN5A 1G24A 1GIRA 2GWLA 1YQYA 1GY0A 3U0JA 2J3ZA 1PWUA 4H0XA 1GZEA 2J3VA 1QS1A 1OJQA 4XSHB 1PWWA 3NTSA 1R4BA 4DV8A 1GXZA 2C8AA 5D1UA 1J7NA 4H0TA 5D1TA 1OG3A 1PWQA 4PKQA 2GWMA 3BW8A 1GXYA 5H04A 4PKVA 4FXQA 2C8EE 2C8CA 4XM8A 2C89A 4GY2A 2C8BX 5H03A 1OG4A 1ZXVA 1OJZA 1QS2A 2WN6A 2C8GA 4XM6A 4FK7A 4PKSA 5DZQA 2C8FE 4H03A 5BWMB 4PKUA 4PKRA 4PKWA 1GZFA 5GTTA 2C8DA 1UZIA 2A9KB 1JKYA 4XSGB 2WN7A 2WN4A 1R45A 4GF1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D1S A;  4H0V A;  4FML A;  3BUZ A;  4ELN A;  4PKT A;  1PWV A;  2A78 B;  2C8H A;  4H0Y A;  2WN8 A;  1PWP A;  4XM7 A;  1OG1 A;  4TR5 A;  4WF6 A;  1GIQ A;  2J3X A;  2BOV B;  2WN5 A;  1G24 A;  1GIR A;  2GWL A;  1YQY A;  1GY0 A;  3U0J A;  2J3Z A;  1PWU A;  4H0X A;  1GZE A;  2J3V A;  1QS1 A;  1OJQ A;  4XSH B;  1PWW A;  3NTS A;  1R4B A;  4DV8 A;  1GXZ A;  2C8A A;  5D1U A;  1J7N A;  4H0T A;  5D1T A;  1OG3 A;  1PWQ A;  4PKQ A;  2GWM A;  3BW8 A;  1GXY A;  5H04 A;  4PKV A;  4FXQ A;  2C8E E;  2C8C A;  4XM8 A;  2C89 A;  4GY2 A;  2C8B X;  5H03 A;  1OG4 A;  1ZXV A;  1OJZ A;  1QS2 A;  2WN6 A;  2C8G A;  4XM6 A;  4FK7 A;  4PKS A;  5DZQ A;  2C8F E;  4H03 A;  5BWM B;  4PKU A;  4PKR A;  4PKW A;  1GZF A;  5GTT A;  2C8D A;  1UZI A;  2A9K B;  1JKY A;  4XSG B;  2WN7 A;  2WN4 A;  1R45 A;  4GF1 A; 
#chains in the Genus database with same CATH topology
 5D1S A;  4H0V A;  4FML A;  3BUZ A;  4ELN A;  4PKT A;  1PWV A;  2A78 B;  2C8H A;  4H0Y A;  2WN8 A;  1PWP A;  4XM7 A;  1OG1 A;  4TR5 A;  4WF6 A;  1GIQ A;  2J3X A;  2BOV B;  2WN5 A;  1G24 A;  1GIR A;  2GWL A;  1YQY A;  1GY0 A;  3U0J A;  2J3Z A;  1PWU A;  4H0X A;  1GZE A;  2J3V A;  1QS1 A;  1OJQ A;  4XSH B;  1PWW A;  3NTS A;  1R4B A;  4DV8 A;  1GXZ A;  2C8A A;  5D1U A;  1J7N A;  4H0T A;  5D1T A;  1OG3 A;  1PWQ A;  4PKQ A;  2GWM A;  3BW8 A;  1GXY A;  5H04 A;  4PKV A;  4FXQ A;  2C8E E;  2C8C A;  4XM8 A;  2C89 A;  4GY2 A;  2C8B X;  5H03 A;  1OG4 A;  1ZXV A;  1OJZ A;  1QS2 A;  2WN6 A;  2C8G A;  4XM6 A;  4FK7 A;  4PKS A;  5DZQ A;  2C8F E;  4H03 A;  5BWM B;  4PKU A;  4PKR A;  4PKW A;  1GZF A;  5GTT A;  2C8D A;  1UZI A;  2A9K B;  1JKY A;  4XSG B;  2WN7 A;  2WN4 A;  1R45 A;  4GF1 A; 
#chains in the Genus database with same CATH homology
 5D1S A;  4H0V A;  4FML A;  3BUZ A;  4ELN A;  4PKT A;  1PWV A;  2A78 B;  2C8H A;  4H0Y A;  2WN8 A;  1PWP A;  4XM7 A;  1OG1 A;  4TR5 A;  4WF6 A;  1GIQ A;  2J3X A;  2BOV B;  2WN5 A;  1G24 A;  1GIR A;  2GWL A;  1YQY A;  1GY0 A;  3U0J A;  2J3Z A;  1PWU A;  4H0X A;  1GZE A;  2J3V A;  1QS1 A;  1OJQ A;  4XSH B;  1PWW A;  3NTS A;  1R4B A;  4DV8 A;  1GXZ A;  2C8A A;  5D1U A;  1J7N A;  4H0T A;  5D1T A;  1OG3 A;  1PWQ A;  4PKQ A;  2GWM A;  3BW8 A;  1GXY A;  5H04 A;  4PKV A;  4FXQ A;  2C8E E;  2C8C A;  4XM8 A;  2C89 A;  4GY2 A;  2C8B X;  5H03 A;  1OG4 A;  1ZXV A;  1OJZ A;  1QS2 A;  2WN6 A;  2C8G A;  4XM6 A;  4FK7 A;  4PKS A;  5DZQ A;  2C8F E;  4H03 A;  5BWM B;  4PKU A;  4PKR A;  4PKW A;  1GZF A;  5GTT A;  2C8D A;  1UZI A;  2A9K B;  1JKY A;  4XSG B;  2WN7 A;  2WN4 A;  1R45 A;  4GF1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...