5BWMB

The complex structure of c3cer exoenzyme and gdp bound rhoa (nadh-bound state)
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
205
structure length
205
Chain Sequence
KYKLCTNKEEADAWGKKQFNKWSKEEKSAIRDYTKNARPYNEFLRMHAGKLDSDPTMKKKIESLDKALNRKEAKVNDNIKVYRGDDAWIFGKEYDNSIIKNGKVDREKFKEIQKKFQGKTTTEFGYISTSILIDAGYAKTRPVMTEFKVGSGTHGAYMNSDDLTAYPGQYELLLPRNTVYKIEKIYIAIDNNTQKEQIKVEATIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein/transferase
molecule keywords Transforming protein RhoA
publication title Rho GTPase Recognition by C3 Exoenzyme Based on C3-RhoA Complex Structure.
pubmed doi rcsb
source organism Homo sapiens
total genus 60
structure length 205
sequence length 205
ec nomenclature
pdb deposition date 2015-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5bwmB00
4XM6A 5DZQA 1GZFA 4FK7A 5H04A 1GXZA 1PWUA 1G24A 4PKWA 4PKTA 1YQYA 4FXQA 1JKYA 2C8HA 4PKRA 1OJQA 4XM7A 5D1UA 4GF1A 3BUZA 1R4BA 2J3XA 1PWWA 2WN4A 2J3VA 4WF6A 4XM8A 1OJZA 1OG3A 1GZEA 2A78B 2C89A 1QS2A 1QS1A 2J3ZA 5BWMB 5H03A 4PKQA 3BW8A 1R45A 4PKSA 2WN5A 4XSHB 2GWMA 1UZIA 2WN6A 1OG4A 4H03A 1PWVA 5D1TA 1GY0A 2C8CA 4FMLA 2C8FE 1PWPA 4PKUA 1J7NA 1ZXVA 2C8DA 2WN7A 4H0TA 2WN8A 4H0VA 5GTTA 1PWQA 3U0JA 4ELNA 4PKVA 2A9KB 2GWLA 4DV8A 1GIQA 2C8GA 4H0YA 2C8EE 3NTSA 1GXYA 4XSGB 2BOVB 1OG1A 2C8AA 4GY2A 2C8BX 4TR5A 4H0XA 1GIRA 5D1SA
chains in the Genus database with same CATH superfamily
4XM6A 5DZQA 1GZFA 4FK7A 5H04A 1GXZA 1PWUA 1G24A 4PKWA 4PKTA 1YQYA 4FXQA 1JKYA 2C8HA 4PKRA 1OJQA 4XM7A 5D1UA 4GF1A 3BUZA 1R4BA 2J3XA 1PWWA 2WN4A 2J3VA 4WF6A 4XM8A 1OJZA 1OG3A 1GZEA 2A78B 2C89A 1QS2A 1QS1A 2J3ZA 5BWMB 5H03A 4PKQA 3BW8A 1R45A 4PKSA 2WN5A 4XSHB 2GWMA 1UZIA 2WN6A 1OG4A 4H03A 1PWVA 5D1TA 1GY0A 2C8CA 4FMLA 2C8FE 1PWPA 4PKUA 1J7NA 1ZXVA 2C8DA 2WN7A 4H0TA 2WN8A 4H0VA 5GTTA 1PWQA 3U0JA 4ELNA 4PKVA 2A9KB 2GWLA 4DV8A 1GIQA 2C8GA 4H0YA 2C8EE 3NTSA 1GXYA 4XSGB 2BOVB 1OG1A 2C8AA 4GY2A 2C8BX 4TR5A 4H0XA 1GIRA 5D1SA
chains in the Genus database with same CATH topology
4XM6A 5DZQA 1GZFA 4FK7A 5H04A 1GXZA 1PWUA 1G24A 4PKWA 4PKTA 1YQYA 4FXQA 1JKYA 2C8HA 4PKRA 1OJQA 4XM7A 5D1UA 4GF1A 3BUZA 1R4BA 2J3XA 1PWWA 2WN4A 2J3VA 4WF6A 4XM8A 1OJZA 1OG3A 1GZEA 2A78B 2C89A 1QS2A 1QS1A 2J3ZA 5BWMB 5H03A 4PKQA 3BW8A 1R45A 4PKSA 2WN5A 4XSHB 2GWMA 1UZIA 2WN6A 1OG4A 4H03A 1PWVA 5D1TA 1GY0A 2C8CA 4FMLA 2C8FE 1PWPA 4PKUA 1J7NA 1ZXVA 2C8DA 2WN7A 4H0TA 2WN8A 4H0VA 5GTTA 1PWQA 3U0JA 4ELNA 4PKVA 2A9KB 2GWLA 4DV8A 1GIQA 2C8GA 4H0YA 2C8EE 3NTSA 1GXYA 4XSGB 2BOVB 1OG1A 2C8AA 4GY2A 2C8BX 4TR5A 4H0XA 1GIRA 5D1SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XM6 A;  5DZQ A;  1GZF A;  4FK7 A;  5H04 A;  1GXZ A;  1PWU A;  1G24 A;  4PKW A;  4PKT A;  1YQY A;  4FXQ A;  1JKY A;  2C8H A;  4PKR A;  1OJQ A;  4XM7 A;  5D1U A;  4GF1 A;  3BUZ A;  1R4B A;  2J3X A;  1PWW A;  2WN4 A;  2J3V A;  4WF6 A;  4XM8 A;  1OJZ A;  1OG3 A;  1GZE A;  2A78 B;  2C89 A;  1QS2 A;  1QS1 A;  2J3Z A;  5BWM B;  5H03 A;  4PKQ A;  3BW8 A;  1R45 A;  4PKS A;  2WN5 A;  4XSH B;  2GWM A;  1UZI A;  2WN6 A;  1OG4 A;  4H03 A;  1PWV A;  5D1T A;  1GY0 A;  2C8C A;  4FML A;  2C8F E;  1PWP A;  4PKU A;  1J7N A;  1ZXV A;  2C8D A;  2WN7 A;  4H0T A;  2WN8 A;  4H0V A;  5GTT A;  1PWQ A;  3U0J A;  4ELN A;  4PKV A;  2A9K B;  2GWL A;  4DV8 A;  1GIQ A;  2C8G A;  4H0Y A;  2C8E E;  3NTS A;  1GXY A;  4XSG B;  2BOV B;  1OG1 A;  2C8A A;  4GY2 A;  2C8B X;  4TR5 A;  4H0X A;  1GIR A;  5D1S A; 
#chains in the Genus database with same CATH topology
 4XM6 A;  5DZQ A;  1GZF A;  4FK7 A;  5H04 A;  1GXZ A;  1PWU A;  1G24 A;  4PKW A;  4PKT A;  1YQY A;  4FXQ A;  1JKY A;  2C8H A;  4PKR A;  1OJQ A;  4XM7 A;  5D1U A;  4GF1 A;  3BUZ A;  1R4B A;  2J3X A;  1PWW A;  2WN4 A;  2J3V A;  4WF6 A;  4XM8 A;  1OJZ A;  1OG3 A;  1GZE A;  2A78 B;  2C89 A;  1QS2 A;  1QS1 A;  2J3Z A;  5BWM B;  5H03 A;  4PKQ A;  3BW8 A;  1R45 A;  4PKS A;  2WN5 A;  4XSH B;  2GWM A;  1UZI A;  2WN6 A;  1OG4 A;  4H03 A;  1PWV A;  5D1T A;  1GY0 A;  2C8C A;  4FML A;  2C8F E;  1PWP A;  4PKU A;  1J7N A;  1ZXV A;  2C8D A;  2WN7 A;  4H0T A;  2WN8 A;  4H0V A;  5GTT A;  1PWQ A;  3U0J A;  4ELN A;  4PKV A;  2A9K B;  2GWL A;  4DV8 A;  1GIQ A;  2C8G A;  4H0Y A;  2C8E E;  3NTS A;  1GXY A;  4XSG B;  2BOV B;  1OG1 A;  2C8A A;  4GY2 A;  2C8B X;  4TR5 A;  4H0X A;  1GIR A;  5D1S A; 
#chains in the Genus database with same CATH homology
 4XM6 A;  5DZQ A;  1GZF A;  4FK7 A;  5H04 A;  1GXZ A;  1PWU A;  1G24 A;  4PKW A;  4PKT A;  1YQY A;  4FXQ A;  1JKY A;  2C8H A;  4PKR A;  1OJQ A;  4XM7 A;  5D1U A;  4GF1 A;  3BUZ A;  1R4B A;  2J3X A;  1PWW A;  2WN4 A;  2J3V A;  4WF6 A;  4XM8 A;  1OJZ A;  1OG3 A;  1GZE A;  2A78 B;  2C89 A;  1QS2 A;  1QS1 A;  2J3Z A;  5BWM B;  5H03 A;  4PKQ A;  3BW8 A;  1R45 A;  4PKS A;  2WN5 A;  4XSH B;  2GWM A;  1UZI A;  2WN6 A;  1OG4 A;  4H03 A;  1PWV A;  5D1T A;  1GY0 A;  2C8C A;  4FML A;  2C8F E;  1PWP A;  4PKU A;  1J7N A;  1ZXV A;  2C8D A;  2WN7 A;  4H0T A;  2WN8 A;  4H0V A;  5GTT A;  1PWQ A;  3U0J A;  4ELN A;  4PKV A;  2A9K B;  2GWL A;  4DV8 A;  1GIQ A;  2C8G A;  4H0Y A;  2C8E E;  3NTS A;  1GXY A;  4XSG B;  2BOV B;  1OG1 A;  2C8A A;  4GY2 A;  2C8B X;  4TR5 A;  4H0X A;  1GIR A;  5D1S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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