5H04A

Crystal structure of an adp-ribosylating toxin beca of a novel binary enterotoxin of c. perfringens with nadh
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
419
structure length
419
Chain Sequence
MLDDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Clostridium perfringens
publication title Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
pubmed doi rcsb
molecule keywords Binary enterotoxin of Clostridium perfringens component a
total genus 155
structure length 419
sequence length 419
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A01
1PWQA 4ELNA 3BUZA 4XM6A 4FMLA 4XM8A 4GY2A 4H0TA 5D1SA 3NTSA 5D1TA 1GXZA 2J3XA 1GIRA 4H03A 2C8FE 2C8CA 5H04A 4H0YA 1GZEA 4PKRA 5GTTA 5DZQA 1OJZA 4XSHB 1OG1A 5BWMB 1PWPA 1GIQA 4GF1A 2WN5A 2WN6A 4FK7A 1R4BA 2J3ZA 2GWLA 2WN7A 1GXYA 1QS1A 4PKUA 1JKYA 4H0VA 1YQYA 4DV8A 2A78B 1QS2A 4FXQA 2GWMA 2C8DA 2C8BX 2BOVB 1OG4A 1PWUA 2C8HA 1GY0A 1UZIA 1GZFA 1PWWA 2WN4A 5D1UA 1G24A 2C89A 2A9KB 1OJQA 5H03A 4PKSA 4PKQA 4PKVA 4TR5A 2C8GA 4PKTA 3U0JA 1ZXVA 4PKWA 4WF6A 4XSGB 1J7NA 2C8AA 1PWVA 4H0XA 4XM7A 2C8EE 1R45A 2J3VA 2WN8A 1OG3A 3BW8A
chains in the Genus database with same CATH superfamily
1PWQA 4ELNA 3BUZA 4XM6A 4FMLA 4XM8A 4GY2A 4H0TA 5D1SA 3NTSA 5D1TA 1GXZA 2J3XA 1GIRA 4H03A 2C8FE 2C8CA 5H04A 4H0YA 1GZEA 4PKRA 5GTTA 5DZQA 1OJZA 4XSHB 1OG1A 5BWMB 1PWPA 1GIQA 4GF1A 2WN5A 2WN6A 4FK7A 1R4BA 2J3ZA 2GWLA 2WN7A 1GXYA 1QS1A 4PKUA 1JKYA 4H0VA 1YQYA 4DV8A 2A78B 1QS2A 4FXQA 2GWMA 2C8DA 2C8BX 2BOVB 1OG4A 1PWUA 2C8HA 1GY0A 1UZIA 1GZFA 1PWWA 2WN4A 5D1UA 1G24A 2C89A 2A9KB 1OJQA 5H03A 4PKSA 4PKQA 4PKVA 4TR5A 2C8GA 4PKTA 3U0JA 1ZXVA 4PKWA 4WF6A 4XSGB 1J7NA 2C8AA 1PWVA 4H0XA 4XM7A 2C8EE 1R45A 2J3VA 2WN8A 1OG3A 3BW8A
chains in the Genus database with same CATH topology
1PWQA 4ELNA 3BUZA 4XM6A 4FMLA 4XM8A 4GY2A 4H0TA 5D1SA 3NTSA 5D1TA 1GXZA 2J3XA 1GIRA 4H03A 2C8FE 2C8CA 5H04A 4H0YA 1GZEA 4PKRA 5GTTA 5DZQA 1OJZA 4XSHB 1OG1A 5BWMB 1PWPA 1GIQA 4GF1A 2WN5A 2WN6A 4FK7A 1R4BA 2J3ZA 2GWLA 2WN7A 1GXYA 1QS1A 4PKUA 1JKYA 4H0VA 1YQYA 4DV8A 2A78B 1QS2A 4FXQA 2GWMA 2C8DA 2C8BX 2BOVB 1OG4A 1PWUA 2C8HA 1GY0A 1UZIA 1GZFA 1PWWA 2WN4A 5D1UA 1G24A 2C89A 2A9KB 1OJQA 5H03A 4PKSA 4PKQA 4PKVA 4TR5A 2C8GA 4PKTA 3U0JA 1ZXVA 4PKWA 4WF6A 4XSGB 1J7NA 2C8AA 1PWVA 4H0XA 4XM7A 2C8EE 1R45A 2J3VA 2WN8A 1OG3A 3BW8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PWQ A;  4ELN A;  3BUZ A;  4XM6 A;  4FML A;  4XM8 A;  4GY2 A;  4H0T A;  5D1S A;  3NTS A;  5D1T A;  1GXZ A;  2J3X A;  1GIR A;  4H03 A;  2C8F E;  2C8C A;  5H04 A;  4H0Y A;  1GZE A;  4PKR A;  5GTT A;  5DZQ A;  1OJZ A;  4XSH B;  1OG1 A;  5BWM B;  1PWP A;  1GIQ A;  4GF1 A;  2WN5 A;  2WN6 A;  4FK7 A;  1R4B A;  2J3Z A;  2GWL A;  2WN7 A;  1GXY A;  1QS1 A;  4PKU A;  1JKY A;  4H0V A;  1YQY A;  4DV8 A;  2A78 B;  1QS2 A;  4FXQ A;  2GWM A;  2C8D A;  2C8B X;  2BOV B;  1OG4 A;  1PWU A;  2C8H A;  1GY0 A;  1UZI A;  1GZF A;  1PWW A;  2WN4 A;  5D1U A;  1G24 A;  2C89 A;  2A9K B;  1OJQ A;  5H03 A;  4PKS A;  4PKQ A;  4PKV A;  4TR5 A;  2C8G A;  4PKT A;  3U0J A;  1ZXV A;  4PKW A;  4WF6 A;  4XSG B;  1J7N A;  2C8A A;  1PWV A;  4H0X A;  4XM7 A;  2C8E E;  1R45 A;  2J3V A;  2WN8 A;  1OG3 A;  3BW8 A; 
#chains in the Genus database with same CATH topology
 1PWQ A;  4ELN A;  3BUZ A;  4XM6 A;  4FML A;  4XM8 A;  4GY2 A;  4H0T A;  5D1S A;  3NTS A;  5D1T A;  1GXZ A;  2J3X A;  1GIR A;  4H03 A;  2C8F E;  2C8C A;  5H04 A;  4H0Y A;  1GZE A;  4PKR A;  5GTT A;  5DZQ A;  1OJZ A;  4XSH B;  1OG1 A;  5BWM B;  1PWP A;  1GIQ A;  4GF1 A;  2WN5 A;  2WN6 A;  4FK7 A;  1R4B A;  2J3Z A;  2GWL A;  2WN7 A;  1GXY A;  1QS1 A;  4PKU A;  1JKY A;  4H0V A;  1YQY A;  4DV8 A;  2A78 B;  1QS2 A;  4FXQ A;  2GWM A;  2C8D A;  2C8B X;  2BOV B;  1OG4 A;  1PWU A;  2C8H A;  1GY0 A;  1UZI A;  1GZF A;  1PWW A;  2WN4 A;  5D1U A;  1G24 A;  2C89 A;  2A9K B;  1OJQ A;  5H03 A;  4PKS A;  4PKQ A;  4PKV A;  4TR5 A;  2C8G A;  4PKT A;  3U0J A;  1ZXV A;  4PKW A;  4WF6 A;  4XSG B;  1J7N A;  2C8A A;  1PWV A;  4H0X A;  4XM7 A;  2C8E E;  1R45 A;  2J3V A;  2WN8 A;  1OG3 A;  3BW8 A; 
#chains in the Genus database with same CATH homology
 1PWQ A;  4ELN A;  3BUZ A;  4XM6 A;  4FML A;  4XM8 A;  4GY2 A;  4H0T A;  5D1S A;  3NTS A;  5D1T A;  1GXZ A;  2J3X A;  1GIR A;  4H03 A;  2C8F E;  2C8C A;  5H04 A;  4H0Y A;  1GZE A;  4PKR A;  5GTT A;  5DZQ A;  1OJZ A;  4XSH B;  1OG1 A;  5BWM B;  1PWP A;  1GIQ A;  4GF1 A;  2WN5 A;  2WN6 A;  4FK7 A;  1R4B A;  2J3Z A;  2GWL A;  2WN7 A;  1GXY A;  1QS1 A;  4PKU A;  1JKY A;  4H0V A;  1YQY A;  4DV8 A;  2A78 B;  1QS2 A;  4FXQ A;  2GWM A;  2C8D A;  2C8B X;  2BOV B;  1OG4 A;  1PWU A;  2C8H A;  1GY0 A;  1UZI A;  1GZF A;  1PWW A;  2WN4 A;  5D1U A;  1G24 A;  2C89 A;  2A9K B;  1OJQ A;  5H03 A;  4PKS A;  4PKQ A;  4PKV A;  4TR5 A;  2C8G A;  4PKT A;  3U0J A;  1ZXV A;  4PKW A;  4WF6 A;  4XSG B;  1J7N A;  2C8A A;  1PWV A;  4H0X A;  4XM7 A;  2C8E E;  1R45 A;  2J3V A;  2WN8 A;  1OG3 A;  3BW8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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