5H04A

Crystal structure of an adp-ribosylating toxin beca of a novel binary enterotoxin of c. perfringens with nadh
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
419
structure length
419
Chain Sequence
MLDDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
pubmed doi rcsb
source organism Clostridium perfringens
total genus 155
structure length 419
sequence length 419
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A01
1GXYA 2C8AA 4TR5A 1OJQA 2BOVB 5GTTA 2J3XA 1J7NA 5H04A 1QS2A 2C8FE 2WN8A 1GXZA 1QS1A 2GWMA 4XM6A 1R45A 4PKUA 2C8HA 1PWWA 1ZXVA 5H03A 1GZFA 2WN7A 4XSGB 1JKYA 4FMLA 3U0JA 1GY0A 4PKRA 4H0TA 5DZQA 2C8EE 1PWQA 1G24A 1PWUA 4WF6A 4FXQA 2J3ZA 4PKWA 2WN6A 2GWLA 4PKSA 4H0VA 4PKVA 4GF1A 4PKQA 1OJZA 1YQYA 1OG3A 2C89A 1OG1A 2C8DA 2C8CA 4GY2A 4ELNA 5D1TA 4FK7A 4H03A 4XM8A 1PWVA 1OG4A 1GZEA 5BWMB 1GIQA 4H0YA 5D1SA 1PWPA 2WN5A 2A9KB 4DV8A 4XSHB 1UZIA 2J3VA 4H0XA 2C8BX 3BUZA 1GIRA 2C8GA 2WN4A 3NTSA 4PKTA 5D1UA 3BW8A 2A78B 4XM7A 1R4BA
chains in the Genus database with same CATH superfamily
1GXYA 2C8AA 4TR5A 1OJQA 2BOVB 5GTTA 2J3XA 1J7NA 5H04A 1QS2A 2C8FE 2WN8A 1GXZA 1QS1A 2GWMA 4XM6A 1R45A 4PKUA 2C8HA 1PWWA 1ZXVA 5H03A 1GZFA 2WN7A 4XSGB 1JKYA 4FMLA 3U0JA 1GY0A 4PKRA 4H0TA 5DZQA 2C8EE 1PWQA 1G24A 1PWUA 4WF6A 4FXQA 2J3ZA 4PKWA 2WN6A 2GWLA 4PKSA 4H0VA 4PKVA 4GF1A 4PKQA 1OJZA 1YQYA 1OG3A 2C89A 1OG1A 2C8DA 2C8CA 4GY2A 4ELNA 5D1TA 4FK7A 4H03A 4XM8A 1PWVA 1OG4A 1GZEA 5BWMB 1GIQA 4H0YA 5D1SA 1PWPA 2WN5A 2A9KB 4DV8A 4XSHB 1UZIA 2J3VA 4H0XA 2C8BX 3BUZA 1GIRA 2C8GA 2WN4A 3NTSA 4PKTA 5D1UA 3BW8A 2A78B 4XM7A 1R4BA
chains in the Genus database with same CATH topology
1GXYA 2C8AA 4TR5A 1OJQA 2BOVB 5GTTA 2J3XA 1J7NA 5H04A 1QS2A 2C8FE 2WN8A 1GXZA 1QS1A 2GWMA 4XM6A 1R45A 4PKUA 2C8HA 1PWWA 1ZXVA 5H03A 1GZFA 2WN7A 4XSGB 1JKYA 4FMLA 3U0JA 1GY0A 4PKRA 4H0TA 5DZQA 2C8EE 1PWQA 1G24A 1PWUA 4WF6A 4FXQA 2J3ZA 4PKWA 2WN6A 2GWLA 4PKSA 4H0VA 4PKVA 4GF1A 4PKQA 1OJZA 1YQYA 1OG3A 2C89A 1OG1A 2C8DA 2C8CA 4GY2A 4ELNA 5D1TA 4FK7A 4H03A 4XM8A 1PWVA 1OG4A 1GZEA 5BWMB 1GIQA 4H0YA 5D1SA 1PWPA 2WN5A 2A9KB 4DV8A 4XSHB 1UZIA 2J3VA 4H0XA 2C8BX 3BUZA 1GIRA 2C8GA 2WN4A 3NTSA 4PKTA 5D1UA 3BW8A 2A78B 4XM7A 1R4BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GXY A;  2C8A A;  4TR5 A;  1OJQ A;  2BOV B;  5GTT A;  2J3X A;  1J7N A;  5H04 A;  1QS2 A;  2C8F E;  2WN8 A;  1GXZ A;  1QS1 A;  2GWM A;  4XM6 A;  1R45 A;  4PKU A;  2C8H A;  1PWW A;  1ZXV A;  5H03 A;  1GZF A;  2WN7 A;  4XSG B;  1JKY A;  4FML A;  3U0J A;  1GY0 A;  4PKR A;  4H0T A;  5DZQ A;  2C8E E;  1PWQ A;  1G24 A;  1PWU A;  4WF6 A;  4FXQ A;  2J3Z A;  4PKW A;  2WN6 A;  2GWL A;  4PKS A;  4H0V A;  4PKV A;  4GF1 A;  4PKQ A;  1OJZ A;  1YQY A;  1OG3 A;  2C89 A;  1OG1 A;  2C8D A;  2C8C A;  4GY2 A;  4ELN A;  5D1T A;  4FK7 A;  4H03 A;  4XM8 A;  1PWV A;  1OG4 A;  1GZE A;  5BWM B;  1GIQ A;  4H0Y A;  5D1S A;  1PWP A;  2WN5 A;  2A9K B;  4DV8 A;  4XSH B;  1UZI A;  2J3V A;  4H0X A;  2C8B X;  3BUZ A;  1GIR A;  2C8G A;  2WN4 A;  3NTS A;  4PKT A;  5D1U A;  3BW8 A;  2A78 B;  4XM7 A;  1R4B A; 
#chains in the Genus database with same CATH topology
 1GXY A;  2C8A A;  4TR5 A;  1OJQ A;  2BOV B;  5GTT A;  2J3X A;  1J7N A;  5H04 A;  1QS2 A;  2C8F E;  2WN8 A;  1GXZ A;  1QS1 A;  2GWM A;  4XM6 A;  1R45 A;  4PKU A;  2C8H A;  1PWW A;  1ZXV A;  5H03 A;  1GZF A;  2WN7 A;  4XSG B;  1JKY A;  4FML A;  3U0J A;  1GY0 A;  4PKR A;  4H0T A;  5DZQ A;  2C8E E;  1PWQ A;  1G24 A;  1PWU A;  4WF6 A;  4FXQ A;  2J3Z A;  4PKW A;  2WN6 A;  2GWL A;  4PKS A;  4H0V A;  4PKV A;  4GF1 A;  4PKQ A;  1OJZ A;  1YQY A;  1OG3 A;  2C89 A;  1OG1 A;  2C8D A;  2C8C A;  4GY2 A;  4ELN A;  5D1T A;  4FK7 A;  4H03 A;  4XM8 A;  1PWV A;  1OG4 A;  1GZE A;  5BWM B;  1GIQ A;  4H0Y A;  5D1S A;  1PWP A;  2WN5 A;  2A9K B;  4DV8 A;  4XSH B;  1UZI A;  2J3V A;  4H0X A;  2C8B X;  3BUZ A;  1GIR A;  2C8G A;  2WN4 A;  3NTS A;  4PKT A;  5D1U A;  3BW8 A;  2A78 B;  4XM7 A;  1R4B A; 
#chains in the Genus database with same CATH homology
 1GXY A;  2C8A A;  4TR5 A;  1OJQ A;  2BOV B;  5GTT A;  2J3X A;  1J7N A;  5H04 A;  1QS2 A;  2C8F E;  2WN8 A;  1GXZ A;  1QS1 A;  2GWM A;  4XM6 A;  1R45 A;  4PKU A;  2C8H A;  1PWW A;  1ZXV A;  5H03 A;  1GZF A;  2WN7 A;  4XSG B;  1JKY A;  4FML A;  3U0J A;  1GY0 A;  4PKR A;  4H0T A;  5DZQ A;  2C8E E;  1PWQ A;  1G24 A;  1PWU A;  4WF6 A;  4FXQ A;  2J3Z A;  4PKW A;  2WN6 A;  2GWL A;  4PKS A;  4H0V A;  4PKV A;  4GF1 A;  4PKQ A;  1OJZ A;  1YQY A;  1OG3 A;  2C89 A;  1OG1 A;  2C8D A;  2C8C A;  4GY2 A;  4ELN A;  5D1T A;  4FK7 A;  4H03 A;  4XM8 A;  1PWV A;  1OG4 A;  1GZE A;  5BWM B;  1GIQ A;  4H0Y A;  5D1S A;  1PWP A;  2WN5 A;  2A9K B;  4DV8 A;  4XSH B;  1UZI A;  2J3V A;  4H0X A;  2C8B X;  3BUZ A;  1GIR A;  2C8G A;  2WN4 A;  3NTS A;  4PKT A;  5D1U A;  3BW8 A;  2A78 B;  4XM7 A;  1R4B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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