5H04A

Crystal structure of an adp-ribosylating toxin beca of a novel binary enterotoxin of c. perfringens with nadh
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
419
structure length
419
Chain Sequence
MLDDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
pubmed doi rcsb
source organism Clostridium perfringens
total genus 155
structure length 419
sequence length 419
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A01
5D1SA 1R4BA 5BWMB 4WF6A 1GY0A 4XM6A 1GXZA 1GXYA 1OG4A 2J3XA 1YQYA 4H0TA 1GIRA 4H0YA 2C8CA 4PKUA 4PKSA 2C8AA 4FK7A 2WN8A 2WN5A 2C8FE 4XSHB 1G24A 5H04A 4XM8A 1PWQA 1OJQA 5D1UA 1J7NA 4H0VA 2BOVB 2J3VA 4PKQA 2WN7A 1ZXVA 5H03A 4H03A 4FXQA 4PKTA 1QS1A 1OG1A 2GWLA 2WN4A 4XSGB 1PWUA 2C8EE 1OJZA 2A78B 3BW8A 1PWPA 4PKWA 4GY2A 2C89A 2C8HA 4DV8A 1JKYA 2GWMA 2WN6A 1GZFA 5DZQA 4H0XA 1PWWA 3BUZA 2C8DA 3U0JA 3NTSA 1QS2A 1R45A 4GF1A 1UZIA 4XM7A 2A9KB 4ELNA 1GIQA 2J3ZA 2C8GA 4PKVA 5D1TA 2C8BX 4TR5A 1OG3A 5GTTA 1PWVA 4FMLA 4PKRA 1GZEA
chains in the Genus database with same CATH superfamily
5D1SA 1R4BA 5BWMB 4WF6A 1GY0A 4XM6A 1GXZA 1GXYA 1OG4A 2J3XA 1YQYA 4H0TA 1GIRA 4H0YA 2C8CA 4PKUA 4PKSA 2C8AA 4FK7A 2WN8A 2WN5A 2C8FE 4XSHB 1G24A 5H04A 4XM8A 1PWQA 1OJQA 5D1UA 1J7NA 4H0VA 2BOVB 2J3VA 4PKQA 2WN7A 1ZXVA 5H03A 4H03A 4FXQA 4PKTA 1QS1A 1OG1A 2GWLA 2WN4A 4XSGB 1PWUA 2C8EE 1OJZA 2A78B 3BW8A 1PWPA 4PKWA 4GY2A 2C89A 2C8HA 4DV8A 1JKYA 2GWMA 2WN6A 1GZFA 5DZQA 4H0XA 1PWWA 3BUZA 2C8DA 3U0JA 3NTSA 1QS2A 1R45A 4GF1A 1UZIA 4XM7A 2A9KB 4ELNA 1GIQA 2J3ZA 2C8GA 4PKVA 5D1TA 2C8BX 4TR5A 1OG3A 5GTTA 1PWVA 4FMLA 4PKRA 1GZEA
chains in the Genus database with same CATH topology
5D1SA 1R4BA 5BWMB 4WF6A 1GY0A 4XM6A 1GXZA 1GXYA 1OG4A 2J3XA 1YQYA 4H0TA 1GIRA 4H0YA 2C8CA 4PKUA 4PKSA 2C8AA 4FK7A 2WN8A 2WN5A 2C8FE 4XSHB 1G24A 5H04A 4XM8A 1PWQA 1OJQA 5D1UA 1J7NA 4H0VA 2BOVB 2J3VA 4PKQA 2WN7A 1ZXVA 5H03A 4H03A 4FXQA 4PKTA 1QS1A 1OG1A 2GWLA 2WN4A 4XSGB 1PWUA 2C8EE 1OJZA 2A78B 3BW8A 1PWPA 4PKWA 4GY2A 2C89A 2C8HA 4DV8A 1JKYA 2GWMA 2WN6A 1GZFA 5DZQA 4H0XA 1PWWA 3BUZA 2C8DA 3U0JA 3NTSA 1QS2A 1R45A 4GF1A 1UZIA 4XM7A 2A9KB 4ELNA 1GIQA 2J3ZA 2C8GA 4PKVA 5D1TA 2C8BX 4TR5A 1OG3A 5GTTA 1PWVA 4FMLA 4PKRA 1GZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5D1S A;  1R4B A;  5BWM B;  4WF6 A;  1GY0 A;  4XM6 A;  1GXZ A;  1GXY A;  1OG4 A;  2J3X A;  1YQY A;  4H0T A;  1GIR A;  4H0Y A;  2C8C A;  4PKU A;  4PKS A;  2C8A A;  4FK7 A;  2WN8 A;  2WN5 A;  2C8F E;  4XSH B;  1G24 A;  5H04 A;  4XM8 A;  1PWQ A;  1OJQ A;  5D1U A;  1J7N A;  4H0V A;  2BOV B;  2J3V A;  4PKQ A;  2WN7 A;  1ZXV A;  5H03 A;  4H03 A;  4FXQ A;  4PKT A;  1QS1 A;  1OG1 A;  2GWL A;  2WN4 A;  4XSG B;  1PWU A;  2C8E E;  1OJZ A;  2A78 B;  3BW8 A;  1PWP A;  4PKW A;  4GY2 A;  2C89 A;  2C8H A;  4DV8 A;  1JKY A;  2GWM A;  2WN6 A;  1GZF A;  5DZQ A;  4H0X A;  1PWW A;  3BUZ A;  2C8D A;  3U0J A;  3NTS A;  1QS2 A;  1R45 A;  4GF1 A;  1UZI A;  4XM7 A;  2A9K B;  4ELN A;  1GIQ A;  2J3Z A;  2C8G A;  4PKV A;  5D1T A;  2C8B X;  4TR5 A;  1OG3 A;  5GTT A;  1PWV A;  4FML A;  4PKR A;  1GZE A; 
#chains in the Genus database with same CATH topology
 5D1S A;  1R4B A;  5BWM B;  4WF6 A;  1GY0 A;  4XM6 A;  1GXZ A;  1GXY A;  1OG4 A;  2J3X A;  1YQY A;  4H0T A;  1GIR A;  4H0Y A;  2C8C A;  4PKU A;  4PKS A;  2C8A A;  4FK7 A;  2WN8 A;  2WN5 A;  2C8F E;  4XSH B;  1G24 A;  5H04 A;  4XM8 A;  1PWQ A;  1OJQ A;  5D1U A;  1J7N A;  4H0V A;  2BOV B;  2J3V A;  4PKQ A;  2WN7 A;  1ZXV A;  5H03 A;  4H03 A;  4FXQ A;  4PKT A;  1QS1 A;  1OG1 A;  2GWL A;  2WN4 A;  4XSG B;  1PWU A;  2C8E E;  1OJZ A;  2A78 B;  3BW8 A;  1PWP A;  4PKW A;  4GY2 A;  2C89 A;  2C8H A;  4DV8 A;  1JKY A;  2GWM A;  2WN6 A;  1GZF A;  5DZQ A;  4H0X A;  1PWW A;  3BUZ A;  2C8D A;  3U0J A;  3NTS A;  1QS2 A;  1R45 A;  4GF1 A;  1UZI A;  4XM7 A;  2A9K B;  4ELN A;  1GIQ A;  2J3Z A;  2C8G A;  4PKV A;  5D1T A;  2C8B X;  4TR5 A;  1OG3 A;  5GTT A;  1PWV A;  4FML A;  4PKR A;  1GZE A; 
#chains in the Genus database with same CATH homology
 5D1S A;  1R4B A;  5BWM B;  4WF6 A;  1GY0 A;  4XM6 A;  1GXZ A;  1GXY A;  1OG4 A;  2J3X A;  1YQY A;  4H0T A;  1GIR A;  4H0Y A;  2C8C A;  4PKU A;  4PKS A;  2C8A A;  4FK7 A;  2WN8 A;  2WN5 A;  2C8F E;  4XSH B;  1G24 A;  5H04 A;  4XM8 A;  1PWQ A;  1OJQ A;  5D1U A;  1J7N A;  4H0V A;  2BOV B;  2J3V A;  4PKQ A;  2WN7 A;  1ZXV A;  5H03 A;  4H03 A;  4FXQ A;  4PKT A;  1QS1 A;  1OG1 A;  2GWL A;  2WN4 A;  4XSG B;  1PWU A;  2C8E E;  1OJZ A;  2A78 B;  3BW8 A;  1PWP A;  4PKW A;  4GY2 A;  2C89 A;  2C8H A;  4DV8 A;  1JKY A;  2GWM A;  2WN6 A;  1GZF A;  5DZQ A;  4H0X A;  1PWW A;  3BUZ A;  2C8D A;  3U0J A;  3NTS A;  1QS2 A;  1R45 A;  4GF1 A;  1UZI A;  4XM7 A;  2A9K B;  4ELN A;  1GIQ A;  2J3Z A;  2C8G A;  4PKV A;  5D1T A;  2C8B X;  4TR5 A;  1OG3 A;  5GTT A;  1PWV A;  4FML A;  4PKR A;  1GZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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