5H04A

Crystal structure of an adp-ribosylating toxin beca of a novel binary enterotoxin of c. perfringens with nadh
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
419
structure length
419
Chain Sequence
MLDDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
pubmed doi rcsb
source organism Clostridium perfringens
molecule tags Toxin
total genus 155
structure length 419
sequence length 419
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A01
1YQYA 4FXQA 1OJQA 1GXYA 2WN6A 4PKWA 5D1TA 1PWUA 4XSHB 2C8HA 1QS1A 2C8BX 4XM6A 1PWWA 4PKQA 4DV8A 4XSGB 2WN5A 5D1UA 3NTSA 2GWLA 5GTTA 1ZXVA 1OG1A 2WN4A 4PKUA 2BOVB 2J3XA 1GZFA 1OG4A 4XM7A 4PKVA 2GWMA 1JKYA 4PKTA 2WN7A 2WN8A 1GIQA 4GF1A 2C8CA 2C8FE 2A9KB 1OJZA 2C8DA 4TR5A 4GY2A 4H0TA 4H0VA 1J7NA 2C89A 2J3ZA 1R45A 2C8EE 2C8AA 4FK7A 1R4BA 1GXZA 5BWMB 4PKSA 5H04A 4FMLA 1UZIA 1PWQA 1G24A 3BUZA 1GIRA 2C8GA 4PKRA 5DZQA 5H03A 4XM8A 4ELNA 4H03A 4H0XA 5D1SA 3BW8A 4WF6A 4H0YA 1PWVA 1PWPA 1OG3A 2J3VA 1GY0A 2A78B 1QS2A 3U0JA 1GZEA
chains in the Genus database with same CATH superfamily
1YQYA 4FXQA 1OJQA 1GXYA 2WN6A 4PKWA 5D1TA 1PWUA 4XSHB 2C8HA 1QS1A 2C8BX 4XM6A 1PWWA 4PKQA 4DV8A 4XSGB 2WN5A 5D1UA 3NTSA 2GWLA 5GTTA 1ZXVA 1OG1A 2WN4A 4PKUA 2BOVB 2J3XA 1GZFA 1OG4A 4XM7A 4PKVA 2GWMA 1JKYA 4PKTA 2WN7A 2WN8A 1GIQA 4GF1A 2C8CA 2C8FE 2A9KB 1OJZA 2C8DA 4TR5A 4GY2A 4H0TA 4H0VA 1J7NA 2C89A 2J3ZA 1R45A 2C8EE 2C8AA 4FK7A 1R4BA 1GXZA 5BWMB 4PKSA 5H04A 4FMLA 1UZIA 1PWQA 1G24A 3BUZA 1GIRA 2C8GA 4PKRA 5DZQA 5H03A 4XM8A 4ELNA 4H03A 4H0XA 5D1SA 3BW8A 4WF6A 4H0YA 1PWVA 1PWPA 1OG3A 2J3VA 1GY0A 2A78B 1QS2A 3U0JA 1GZEA
chains in the Genus database with same CATH topology
1YQYA 4FXQA 1OJQA 1GXYA 2WN6A 4PKWA 5D1TA 1PWUA 4XSHB 2C8HA 1QS1A 2C8BX 4XM6A 1PWWA 4PKQA 4DV8A 4XSGB 2WN5A 5D1UA 3NTSA 2GWLA 5GTTA 1ZXVA 1OG1A 2WN4A 4PKUA 2BOVB 2J3XA 1GZFA 1OG4A 4XM7A 4PKVA 2GWMA 1JKYA 4PKTA 2WN7A 2WN8A 1GIQA 4GF1A 2C8CA 2C8FE 2A9KB 1OJZA 2C8DA 4TR5A 4GY2A 4H0TA 4H0VA 1J7NA 2C89A 2J3ZA 1R45A 2C8EE 2C8AA 4FK7A 1R4BA 1GXZA 5BWMB 4PKSA 5H04A 4FMLA 1UZIA 1PWQA 1G24A 3BUZA 1GIRA 2C8GA 4PKRA 5DZQA 5H03A 4XM8A 4ELNA 4H03A 4H0XA 5D1SA 3BW8A 4WF6A 4H0YA 1PWVA 1PWPA 1OG3A 2J3VA 1GY0A 2A78B 1QS2A 3U0JA 1GZEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQY A;  4FXQ A;  1OJQ A;  1GXY A;  2WN6 A;  4PKW A;  5D1T A;  1PWU A;  4XSH B;  2C8H A;  1QS1 A;  2C8B X;  4XM6 A;  1PWW A;  4PKQ A;  4DV8 A;  4XSG B;  2WN5 A;  5D1U A;  3NTS A;  2GWL A;  5GTT A;  1ZXV A;  1OG1 A;  2WN4 A;  4PKU A;  2BOV B;  2J3X A;  1GZF A;  1OG4 A;  4XM7 A;  4PKV A;  2GWM A;  1JKY A;  4PKT A;  2WN7 A;  2WN8 A;  1GIQ A;  4GF1 A;  2C8C A;  2C8F E;  2A9K B;  1OJZ A;  2C8D A;  4TR5 A;  4GY2 A;  4H0T A;  4H0V A;  1J7N A;  2C89 A;  2J3Z A;  1R45 A;  2C8E E;  2C8A A;  4FK7 A;  1R4B A;  1GXZ A;  5BWM B;  4PKS A;  5H04 A;  4FML A;  1UZI A;  1PWQ A;  1G24 A;  3BUZ A;  1GIR A;  2C8G A;  4PKR A;  5DZQ A;  5H03 A;  4XM8 A;  4ELN A;  4H03 A;  4H0X A;  5D1S A;  3BW8 A;  4WF6 A;  4H0Y A;  1PWV A;  1PWP A;  1OG3 A;  2J3V A;  1GY0 A;  2A78 B;  1QS2 A;  3U0J A;  1GZE A; 
#chains in the Genus database with same CATH topology
 1YQY A;  4FXQ A;  1OJQ A;  1GXY A;  2WN6 A;  4PKW A;  5D1T A;  1PWU A;  4XSH B;  2C8H A;  1QS1 A;  2C8B X;  4XM6 A;  1PWW A;  4PKQ A;  4DV8 A;  4XSG B;  2WN5 A;  5D1U A;  3NTS A;  2GWL A;  5GTT A;  1ZXV A;  1OG1 A;  2WN4 A;  4PKU A;  2BOV B;  2J3X A;  1GZF A;  1OG4 A;  4XM7 A;  4PKV A;  2GWM A;  1JKY A;  4PKT A;  2WN7 A;  2WN8 A;  1GIQ A;  4GF1 A;  2C8C A;  2C8F E;  2A9K B;  1OJZ A;  2C8D A;  4TR5 A;  4GY2 A;  4H0T A;  4H0V A;  1J7N A;  2C89 A;  2J3Z A;  1R45 A;  2C8E E;  2C8A A;  4FK7 A;  1R4B A;  1GXZ A;  5BWM B;  4PKS A;  5H04 A;  4FML A;  1UZI A;  1PWQ A;  1G24 A;  3BUZ A;  1GIR A;  2C8G A;  4PKR A;  5DZQ A;  5H03 A;  4XM8 A;  4ELN A;  4H03 A;  4H0X A;  5D1S A;  3BW8 A;  4WF6 A;  4H0Y A;  1PWV A;  1PWP A;  1OG3 A;  2J3V A;  1GY0 A;  2A78 B;  1QS2 A;  3U0J A;  1GZE A; 
#chains in the Genus database with same CATH homology
 1YQY A;  4FXQ A;  1OJQ A;  1GXY A;  2WN6 A;  4PKW A;  5D1T A;  1PWU A;  4XSH B;  2C8H A;  1QS1 A;  2C8B X;  4XM6 A;  1PWW A;  4PKQ A;  4DV8 A;  4XSG B;  2WN5 A;  5D1U A;  3NTS A;  2GWL A;  5GTT A;  1ZXV A;  1OG1 A;  2WN4 A;  4PKU A;  2BOV B;  2J3X A;  1GZF A;  1OG4 A;  4XM7 A;  4PKV A;  2GWM A;  1JKY A;  4PKT A;  2WN7 A;  2WN8 A;  1GIQ A;  4GF1 A;  2C8C A;  2C8F E;  2A9K B;  1OJZ A;  2C8D A;  4TR5 A;  4GY2 A;  4H0T A;  4H0V A;  1J7N A;  2C89 A;  2J3Z A;  1R45 A;  2C8E E;  2C8A A;  4FK7 A;  1R4B A;  1GXZ A;  5BWM B;  4PKS A;  5H04 A;  4FML A;  1UZI A;  1PWQ A;  1G24 A;  3BUZ A;  1GIR A;  2C8G A;  4PKR A;  5DZQ A;  5H03 A;  4XM8 A;  4ELN A;  4H03 A;  4H0X A;  5D1S A;  3BW8 A;  4WF6 A;  4H0Y A;  1PWV A;  1PWP A;  1OG3 A;  2J3V A;  1GY0 A;  2A78 B;  1QS2 A;  3U0J A;  1GZE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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