5H04A

Crystal structure of an adp-ribosylating toxin beca of a novel binary enterotoxin of c. perfringens with nadh
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
419
structure length
419
Chain Sequence
MLDDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure of the ADP-ribosylating component of BEC, the binary enterotoxin of Clostridium perfringens.
pubmed doi rcsb
source organism Clostridium perfringens
molecule tags Toxin
total genus 155
structure length 419
sequence length 419
ec nomenclature
pdb deposition date 2016-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5h04A01
4PKRA 2J3XA 1OJQA 2GWMA 5D1TA 1OG4A 3U0JA 5H03A 4PKUA 1OG1A 4XSHB 1JKYA 4H0YA 1GZFA 1PWUA 1GY0A 1PWQA 4H0VA 4TR5A 1QS1A 3BUZA 5GTTA 1R4BA 2C89A 4PKQA 1GXYA 4PKVA 2A9KB 5BWMB 3BW8A 1GIQA 2WN8A 5D1SA 2WN7A 1PWWA 4WF6A 2GWLA 1R45A 2WN5A 4H03A 2J3ZA 1GXZA 4XM8A 2BOVB 3NTSA 2C8CA 1PWPA 4GY2A 5H04A 2WN6A 1OJZA 2WN4A 2C8GA 1OG3A 1GZEA 4ELNA 2J3VA 4H0TA 4DV8A 1QS2A 4PKSA 4GF1A 1G24A 2A78B 5D1UA 1PWVA 1YQYA 4FXQA 4XM6A 2C8DA 2C8BX 2C8EE 2C8FE 2C8AA 5DZQA 4XSGB 4PKTA 4H0XA 1J7NA 2C8HA 4PKWA 1GIRA 4FMLA 1UZIA 4XM7A 4FK7A 1ZXVA
chains in the Genus database with same CATH superfamily
4PKRA 2J3XA 1OJQA 2GWMA 5D1TA 1OG4A 3U0JA 5H03A 4PKUA 1OG1A 4XSHB 1JKYA 4H0YA 1GZFA 1PWUA 1GY0A 1PWQA 4H0VA 4TR5A 1QS1A 3BUZA 5GTTA 1R4BA 2C89A 4PKQA 1GXYA 4PKVA 2A9KB 5BWMB 3BW8A 1GIQA 2WN8A 5D1SA 2WN7A 1PWWA 4WF6A 2GWLA 1R45A 2WN5A 4H03A 2J3ZA 1GXZA 4XM8A 2BOVB 3NTSA 2C8CA 1PWPA 4GY2A 5H04A 2WN6A 1OJZA 2WN4A 2C8GA 1OG3A 1GZEA 4ELNA 2J3VA 4H0TA 4DV8A 1QS2A 4PKSA 4GF1A 1G24A 2A78B 5D1UA 1PWVA 1YQYA 4FXQA 4XM6A 2C8DA 2C8BX 2C8EE 2C8FE 2C8AA 5DZQA 4XSGB 4PKTA 4H0XA 1J7NA 2C8HA 4PKWA 1GIRA 4FMLA 1UZIA 4XM7A 4FK7A 1ZXVA
chains in the Genus database with same CATH topology
4PKRA 2J3XA 1OJQA 2GWMA 5D1TA 1OG4A 3U0JA 5H03A 4PKUA 1OG1A 4XSHB 1JKYA 4H0YA 1GZFA 1PWUA 1GY0A 1PWQA 4H0VA 4TR5A 1QS1A 3BUZA 5GTTA 1R4BA 2C89A 4PKQA 1GXYA 4PKVA 2A9KB 5BWMB 3BW8A 1GIQA 2WN8A 5D1SA 2WN7A 1PWWA 4WF6A 2GWLA 1R45A 2WN5A 4H03A 2J3ZA 1GXZA 4XM8A 2BOVB 3NTSA 2C8CA 1PWPA 4GY2A 5H04A 2WN6A 1OJZA 2WN4A 2C8GA 1OG3A 1GZEA 4ELNA 2J3VA 4H0TA 4DV8A 1QS2A 4PKSA 4GF1A 1G24A 2A78B 5D1UA 1PWVA 1YQYA 4FXQA 4XM6A 2C8DA 2C8BX 2C8EE 2C8FE 2C8AA 5DZQA 4XSGB 4PKTA 4H0XA 1J7NA 2C8HA 4PKWA 1GIRA 4FMLA 1UZIA 4XM7A 4FK7A 1ZXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKR A;  2J3X A;  1OJQ A;  2GWM A;  5D1T A;  1OG4 A;  3U0J A;  5H03 A;  4PKU A;  1OG1 A;  4XSH B;  1JKY A;  4H0Y A;  1GZF A;  1PWU A;  1GY0 A;  1PWQ A;  4H0V A;  4TR5 A;  1QS1 A;  3BUZ A;  5GTT A;  1R4B A;  2C89 A;  4PKQ A;  1GXY A;  4PKV A;  2A9K B;  5BWM B;  3BW8 A;  1GIQ A;  2WN8 A;  5D1S A;  2WN7 A;  1PWW A;  4WF6 A;  2GWL A;  1R45 A;  2WN5 A;  4H03 A;  2J3Z A;  1GXZ A;  4XM8 A;  2BOV B;  3NTS A;  2C8C A;  1PWP A;  4GY2 A;  5H04 A;  2WN6 A;  1OJZ A;  2WN4 A;  2C8G A;  1OG3 A;  1GZE A;  4ELN A;  2J3V A;  4H0T A;  4DV8 A;  1QS2 A;  4PKS A;  4GF1 A;  1G24 A;  2A78 B;  5D1U A;  1PWV A;  1YQY A;  4FXQ A;  4XM6 A;  2C8D A;  2C8B X;  2C8E E;  2C8F E;  2C8A A;  5DZQ A;  4XSG B;  4PKT A;  4H0X A;  1J7N A;  2C8H A;  4PKW A;  1GIR A;  4FML A;  1UZI A;  4XM7 A;  4FK7 A;  1ZXV A; 
#chains in the Genus database with same CATH topology
 4PKR A;  2J3X A;  1OJQ A;  2GWM A;  5D1T A;  1OG4 A;  3U0J A;  5H03 A;  4PKU A;  1OG1 A;  4XSH B;  1JKY A;  4H0Y A;  1GZF A;  1PWU A;  1GY0 A;  1PWQ A;  4H0V A;  4TR5 A;  1QS1 A;  3BUZ A;  5GTT A;  1R4B A;  2C89 A;  4PKQ A;  1GXY A;  4PKV A;  2A9K B;  5BWM B;  3BW8 A;  1GIQ A;  2WN8 A;  5D1S A;  2WN7 A;  1PWW A;  4WF6 A;  2GWL A;  1R45 A;  2WN5 A;  4H03 A;  2J3Z A;  1GXZ A;  4XM8 A;  2BOV B;  3NTS A;  2C8C A;  1PWP A;  4GY2 A;  5H04 A;  2WN6 A;  1OJZ A;  2WN4 A;  2C8G A;  1OG3 A;  1GZE A;  4ELN A;  2J3V A;  4H0T A;  4DV8 A;  1QS2 A;  4PKS A;  4GF1 A;  1G24 A;  2A78 B;  5D1U A;  1PWV A;  1YQY A;  4FXQ A;  4XM6 A;  2C8D A;  2C8B X;  2C8E E;  2C8F E;  2C8A A;  5DZQ A;  4XSG B;  4PKT A;  4H0X A;  1J7N A;  2C8H A;  4PKW A;  1GIR A;  4FML A;  1UZI A;  4XM7 A;  4FK7 A;  1ZXV A; 
#chains in the Genus database with same CATH homology
 4PKR A;  2J3X A;  1OJQ A;  2GWM A;  5D1T A;  1OG4 A;  3U0J A;  5H03 A;  4PKU A;  1OG1 A;  4XSH B;  1JKY A;  4H0Y A;  1GZF A;  1PWU A;  1GY0 A;  1PWQ A;  4H0V A;  4TR5 A;  1QS1 A;  3BUZ A;  5GTT A;  1R4B A;  2C89 A;  4PKQ A;  1GXY A;  4PKV A;  2A9K B;  5BWM B;  3BW8 A;  1GIQ A;  2WN8 A;  5D1S A;  2WN7 A;  1PWW A;  4WF6 A;  2GWL A;  1R45 A;  2WN5 A;  4H03 A;  2J3Z A;  1GXZ A;  4XM8 A;  2BOV B;  3NTS A;  2C8C A;  1PWP A;  4GY2 A;  5H04 A;  2WN6 A;  1OJZ A;  2WN4 A;  2C8G A;  1OG3 A;  1GZE A;  4ELN A;  2J3V A;  4H0T A;  4DV8 A;  1QS2 A;  4PKS A;  4GF1 A;  1G24 A;  2A78 B;  5D1U A;  1PWV A;  1YQY A;  4FXQ A;  4XM6 A;  2C8D A;  2C8B X;  2C8E E;  2C8F E;  2C8A A;  5DZQ A;  4XSG B;  4PKT A;  4H0X A;  1J7N A;  2C8H A;  4PKW A;  1GIR A;  4FML A;  1UZI A;  4XM7 A;  4FK7 A;  1ZXV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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