5GTTA

Crystal structure of c. perfringens iota-like enterotoxin cpile-a
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
417
structure length
417
Chain Sequence
DDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
pubmed doi rcsb
source organism Clostridium perfringens
total genus 152
structure length 417
sequence length 417
ec nomenclature
pdb deposition date 2016-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5gttA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5gttA01
4ELNA 4PKWA 4PKQA 2C89A 4GF1A 1OG4A 1UZIA 4H0XA 4H0TA 2A78B 4PKVA 2WN6A 1PWQA 2C8EE 3U0JA 1OG3A 2C8CA 4XM8A 2C8FE 1J7NA 4H03A 1QS1A 4PKTA 2J3XA 2GWLA 2WN4A 1OJZA 2C8DA 2J3VA 5GTTA 1PWPA 1G24A 4H0VA 1GY0A 4XM6A 2J3ZA 4PKUA 1GIQA 4FMLA 1GIRA 1JKYA 5DZQA 4H0YA 4XSHB 1QS2A 2C8HA 3NTSA 5D1SA 2BOVB 4FK7A 5D1UA 1R4BA 2GWMA 1GZFA 2C8AA 1PWWA 4TR5A 1PWVA 1GXYA 4GY2A 4PKSA 5BWMB 5D1TA 5H03A 4DV8A 3BUZA 4XM7A 2C8GA 1YQYA 1ZXVA 2WN7A 3BW8A 1R45A 4WF6A 2WN8A 1GZEA 4PKRA 2A9KB 4XSGB 1OG1A 1PWUA 2WN5A 2C8BX 1OJQA 5H04A 1GXZA 4FXQA
chains in the Genus database with same CATH superfamily
4ELNA 4PKWA 4PKQA 2C89A 4GF1A 1OG4A 1UZIA 4H0XA 4H0TA 2A78B 4PKVA 2WN6A 1PWQA 2C8EE 3U0JA 1OG3A 2C8CA 4XM8A 2C8FE 1J7NA 4H03A 1QS1A 4PKTA 2J3XA 2GWLA 2WN4A 1OJZA 2C8DA 2J3VA 5GTTA 1PWPA 1G24A 4H0VA 1GY0A 4XM6A 2J3ZA 4PKUA 1GIQA 4FMLA 1GIRA 1JKYA 5DZQA 4H0YA 4XSHB 1QS2A 2C8HA 3NTSA 5D1SA 2BOVB 4FK7A 5D1UA 1R4BA 2GWMA 1GZFA 2C8AA 1PWWA 4TR5A 1PWVA 1GXYA 4GY2A 4PKSA 5BWMB 5D1TA 5H03A 4DV8A 3BUZA 4XM7A 2C8GA 1YQYA 1ZXVA 2WN7A 3BW8A 1R45A 4WF6A 2WN8A 1GZEA 4PKRA 2A9KB 4XSGB 1OG1A 1PWUA 2WN5A 2C8BX 1OJQA 5H04A 1GXZA 4FXQA
chains in the Genus database with same CATH topology
4ELNA 4PKWA 4PKQA 2C89A 4GF1A 1OG4A 1UZIA 4H0XA 4H0TA 2A78B 4PKVA 2WN6A 1PWQA 2C8EE 3U0JA 1OG3A 2C8CA 4XM8A 2C8FE 1J7NA 4H03A 1QS1A 4PKTA 2J3XA 2GWLA 2WN4A 1OJZA 2C8DA 2J3VA 5GTTA 1PWPA 1G24A 4H0VA 1GY0A 4XM6A 2J3ZA 4PKUA 1GIQA 4FMLA 1GIRA 1JKYA 5DZQA 4H0YA 4XSHB 1QS2A 2C8HA 3NTSA 5D1SA 2BOVB 4FK7A 5D1UA 1R4BA 2GWMA 1GZFA 2C8AA 1PWWA 4TR5A 1PWVA 1GXYA 4GY2A 4PKSA 5BWMB 5D1TA 5H03A 4DV8A 3BUZA 4XM7A 2C8GA 1YQYA 1ZXVA 2WN7A 3BW8A 1R45A 4WF6A 2WN8A 1GZEA 4PKRA 2A9KB 4XSGB 1OG1A 1PWUA 2WN5A 2C8BX 1OJQA 5H04A 1GXZA 4FXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ELN A;  4PKW A;  4PKQ A;  2C89 A;  4GF1 A;  1OG4 A;  1UZI A;  4H0X A;  4H0T A;  2A78 B;  4PKV A;  2WN6 A;  1PWQ A;  2C8E E;  3U0J A;  1OG3 A;  2C8C A;  4XM8 A;  2C8F E;  1J7N A;  4H03 A;  1QS1 A;  4PKT A;  2J3X A;  2GWL A;  2WN4 A;  1OJZ A;  2C8D A;  2J3V A;  5GTT A;  1PWP A;  1G24 A;  4H0V A;  1GY0 A;  4XM6 A;  2J3Z A;  4PKU A;  1GIQ A;  4FML A;  1GIR A;  1JKY A;  5DZQ A;  4H0Y A;  4XSH B;  1QS2 A;  2C8H A;  3NTS A;  5D1S A;  2BOV B;  4FK7 A;  5D1U A;  1R4B A;  2GWM A;  1GZF A;  2C8A A;  1PWW A;  4TR5 A;  1PWV A;  1GXY A;  4GY2 A;  4PKS A;  5BWM B;  5D1T A;  5H03 A;  4DV8 A;  3BUZ A;  4XM7 A;  2C8G A;  1YQY A;  1ZXV A;  2WN7 A;  3BW8 A;  1R45 A;  4WF6 A;  2WN8 A;  1GZE A;  4PKR A;  2A9K B;  4XSG B;  1OG1 A;  1PWU A;  2WN5 A;  2C8B X;  1OJQ A;  5H04 A;  1GXZ A;  4FXQ A; 
#chains in the Genus database with same CATH topology
 4ELN A;  4PKW A;  4PKQ A;  2C89 A;  4GF1 A;  1OG4 A;  1UZI A;  4H0X A;  4H0T A;  2A78 B;  4PKV A;  2WN6 A;  1PWQ A;  2C8E E;  3U0J A;  1OG3 A;  2C8C A;  4XM8 A;  2C8F E;  1J7N A;  4H03 A;  1QS1 A;  4PKT A;  2J3X A;  2GWL A;  2WN4 A;  1OJZ A;  2C8D A;  2J3V A;  5GTT A;  1PWP A;  1G24 A;  4H0V A;  1GY0 A;  4XM6 A;  2J3Z A;  4PKU A;  1GIQ A;  4FML A;  1GIR A;  1JKY A;  5DZQ A;  4H0Y A;  4XSH B;  1QS2 A;  2C8H A;  3NTS A;  5D1S A;  2BOV B;  4FK7 A;  5D1U A;  1R4B A;  2GWM A;  1GZF A;  2C8A A;  1PWW A;  4TR5 A;  1PWV A;  1GXY A;  4GY2 A;  4PKS A;  5BWM B;  5D1T A;  5H03 A;  4DV8 A;  3BUZ A;  4XM7 A;  2C8G A;  1YQY A;  1ZXV A;  2WN7 A;  3BW8 A;  1R45 A;  4WF6 A;  2WN8 A;  1GZE A;  4PKR A;  2A9K B;  4XSG B;  1OG1 A;  1PWU A;  2WN5 A;  2C8B X;  1OJQ A;  5H04 A;  1GXZ A;  4FXQ A; 
#chains in the Genus database with same CATH homology
 4ELN A;  4PKW A;  4PKQ A;  2C89 A;  4GF1 A;  1OG4 A;  1UZI A;  4H0X A;  4H0T A;  2A78 B;  4PKV A;  2WN6 A;  1PWQ A;  2C8E E;  3U0J A;  1OG3 A;  2C8C A;  4XM8 A;  2C8F E;  1J7N A;  4H03 A;  1QS1 A;  4PKT A;  2J3X A;  2GWL A;  2WN4 A;  1OJZ A;  2C8D A;  2J3V A;  5GTT A;  1PWP A;  1G24 A;  4H0V A;  1GY0 A;  4XM6 A;  2J3Z A;  4PKU A;  1GIQ A;  4FML A;  1GIR A;  1JKY A;  5DZQ A;  4H0Y A;  4XSH B;  1QS2 A;  2C8H A;  3NTS A;  5D1S A;  2BOV B;  4FK7 A;  5D1U A;  1R4B A;  2GWM A;  1GZF A;  2C8A A;  1PWW A;  4TR5 A;  1PWV A;  1GXY A;  4GY2 A;  4PKS A;  5BWM B;  5D1T A;  5H03 A;  4DV8 A;  3BUZ A;  4XM7 A;  2C8G A;  1YQY A;  1ZXV A;  2WN7 A;  3BW8 A;  1R45 A;  4WF6 A;  2WN8 A;  1GZE A;  4PKR A;  2A9K B;  4XSG B;  1OG1 A;  1PWU A;  2WN5 A;  2C8B X;  1OJQ A;  5H04 A;  1GXZ A;  4FXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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