5GTTA

Crystal structure of c. perfringens iota-like enterotoxin cpile-a
Total Genus 152
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
417
structure length
417
Chain Sequence
DDNRPMDFAKDKNSATLWAKKRKQVWLNNLSKAESTSINNYIKNSSEINSYSIKKKFALDNYEGIETLNEDLKNISTAVKKSMLTKPLYVYYYEANDKFGFNQNLESSLDSNIIDEEAINNFAKKISDTNFIQDGFKDVTMTEPDINSKLPILVHLKLPTNTPAASYGNDEENLRVLIDQGYSLKATGLSIVTIKGKQYAKVDADLIKQLNFENDVISASQWGEENYAPWLKELTSNELRDINNYLGGGYTAINKYLLDGTIGENTSKEDLEEKISNISSALKKRKIPEDIITYRRMGPNEFGLDLNSPDYDFNKVENVSKFKEKWLGKTIPVKTFISTTVLSNNISAFAKRKLILRLHLPNGSNAAYVSVAEGYKNEYEVLIDHGYSYKIDNITEYYDESSLGGKTNKLIIDATLI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Binary enterotoxin of Clostridium perfringens component a
publication title Crystal structure and structure-based mutagenesis of actin-specific ADP-ribosylating toxin CPILE-a as novel enterotoxin
pubmed doi rcsb
source organism Clostridium perfringens
molecule tags Toxin
total genus 152
structure length 417
sequence length 417
ec nomenclature
pdb deposition date 2016-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5gttA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 5gttA01
5GTTA 1G24A 2A9KB 4GY2A 4H0YA 4WF6A 4XM8A 3BW8A 4PKVA 4TR5A 2GWLA 1UZIA 5DZQA 4DV8A 2J3ZA 2J3VA 1PWWA 4PKUA 4PKRA 2WN7A 2C8BX 2C89A 1OG3A 4XM7A 3U0JA 2C8HA 2A78B 4PKSA 1J7NA 2GWMA 2C8CA 4GF1A 4ELNA 5H03A 4XSHB 5H04A 1PWVA 1GXYA 1GZFA 1PWPA 2BOVB 2C8EE 2J3XA 1YQYA 1ZXVA 4XSGB 4PKTA 1OJZA 4XM6A 5D1TA 5BWMB 2WN5A 5D1SA 3NTSA 1QS2A 2WN4A 4PKWA 2C8FE 3BUZA 4H0VA 1R45A 4H0XA 1JKYA 4FK7A 2C8AA 1PWQA 1GIRA 1R4BA 4FMLA 1GIQA 1GZEA 2WN6A 2C8DA 1OG1A 2WN8A 5D1UA 2C8GA 4H03A 1PWUA 4FXQA 1QS1A 1GXZA 1OG4A 1OJQA 1GY0A 4H0TA 4PKQA
chains in the Genus database with same CATH superfamily
5GTTA 1G24A 2A9KB 4GY2A 4H0YA 4WF6A 4XM8A 3BW8A 4PKVA 4TR5A 2GWLA 1UZIA 5DZQA 4DV8A 2J3ZA 2J3VA 1PWWA 4PKUA 4PKRA 2WN7A 2C8BX 2C89A 1OG3A 4XM7A 3U0JA 2C8HA 2A78B 4PKSA 1J7NA 2GWMA 2C8CA 4GF1A 4ELNA 5H03A 4XSHB 5H04A 1PWVA 1GXYA 1GZFA 1PWPA 2BOVB 2C8EE 2J3XA 1YQYA 1ZXVA 4XSGB 4PKTA 1OJZA 4XM6A 5D1TA 5BWMB 2WN5A 5D1SA 3NTSA 1QS2A 2WN4A 4PKWA 2C8FE 3BUZA 4H0VA 1R45A 4H0XA 1JKYA 4FK7A 2C8AA 1PWQA 1GIRA 1R4BA 4FMLA 1GIQA 1GZEA 2WN6A 2C8DA 1OG1A 2WN8A 5D1UA 2C8GA 4H03A 1PWUA 4FXQA 1QS1A 1GXZA 1OG4A 1OJQA 1GY0A 4H0TA 4PKQA
chains in the Genus database with same CATH topology
5GTTA 1G24A 2A9KB 4GY2A 4H0YA 4WF6A 4XM8A 3BW8A 4PKVA 4TR5A 2GWLA 1UZIA 5DZQA 4DV8A 2J3ZA 2J3VA 1PWWA 4PKUA 4PKRA 2WN7A 2C8BX 2C89A 1OG3A 4XM7A 3U0JA 2C8HA 2A78B 4PKSA 1J7NA 2GWMA 2C8CA 4GF1A 4ELNA 5H03A 4XSHB 5H04A 1PWVA 1GXYA 1GZFA 1PWPA 2BOVB 2C8EE 2J3XA 1YQYA 1ZXVA 4XSGB 4PKTA 1OJZA 4XM6A 5D1TA 5BWMB 2WN5A 5D1SA 3NTSA 1QS2A 2WN4A 4PKWA 2C8FE 3BUZA 4H0VA 1R45A 4H0XA 1JKYA 4FK7A 2C8AA 1PWQA 1GIRA 1R4BA 4FMLA 1GIQA 1GZEA 2WN6A 2C8DA 1OG1A 2WN8A 5D1UA 2C8GA 4H03A 1PWUA 4FXQA 1QS1A 1GXZA 1OG4A 1OJQA 1GY0A 4H0TA 4PKQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GTT A;  1G24 A;  2A9K B;  4GY2 A;  4H0Y A;  4WF6 A;  4XM8 A;  3BW8 A;  4PKV A;  4TR5 A;  2GWL A;  1UZI A;  5DZQ A;  4DV8 A;  2J3Z A;  2J3V A;  1PWW A;  4PKU A;  4PKR A;  2WN7 A;  2C8B X;  2C89 A;  1OG3 A;  4XM7 A;  3U0J A;  2C8H A;  2A78 B;  4PKS A;  1J7N A;  2GWM A;  2C8C A;  4GF1 A;  4ELN A;  5H03 A;  4XSH B;  5H04 A;  1PWV A;  1GXY A;  1GZF A;  1PWP A;  2BOV B;  2C8E E;  2J3X A;  1YQY A;  1ZXV A;  4XSG B;  4PKT A;  1OJZ A;  4XM6 A;  5D1T A;  5BWM B;  2WN5 A;  5D1S A;  3NTS A;  1QS2 A;  2WN4 A;  4PKW A;  2C8F E;  3BUZ A;  4H0V A;  1R45 A;  4H0X A;  1JKY A;  4FK7 A;  2C8A A;  1PWQ A;  1GIR A;  1R4B A;  4FML A;  1GIQ A;  1GZE A;  2WN6 A;  2C8D A;  1OG1 A;  2WN8 A;  5D1U A;  2C8G A;  4H03 A;  1PWU A;  4FXQ A;  1QS1 A;  1GXZ A;  1OG4 A;  1OJQ A;  1GY0 A;  4H0T A;  4PKQ A; 
#chains in the Genus database with same CATH topology
 5GTT A;  1G24 A;  2A9K B;  4GY2 A;  4H0Y A;  4WF6 A;  4XM8 A;  3BW8 A;  4PKV A;  4TR5 A;  2GWL A;  1UZI A;  5DZQ A;  4DV8 A;  2J3Z A;  2J3V A;  1PWW A;  4PKU A;  4PKR A;  2WN7 A;  2C8B X;  2C89 A;  1OG3 A;  4XM7 A;  3U0J A;  2C8H A;  2A78 B;  4PKS A;  1J7N A;  2GWM A;  2C8C A;  4GF1 A;  4ELN A;  5H03 A;  4XSH B;  5H04 A;  1PWV A;  1GXY A;  1GZF A;  1PWP A;  2BOV B;  2C8E E;  2J3X A;  1YQY A;  1ZXV A;  4XSG B;  4PKT A;  1OJZ A;  4XM6 A;  5D1T A;  5BWM B;  2WN5 A;  5D1S A;  3NTS A;  1QS2 A;  2WN4 A;  4PKW A;  2C8F E;  3BUZ A;  4H0V A;  1R45 A;  4H0X A;  1JKY A;  4FK7 A;  2C8A A;  1PWQ A;  1GIR A;  1R4B A;  4FML A;  1GIQ A;  1GZE A;  2WN6 A;  2C8D A;  1OG1 A;  2WN8 A;  5D1U A;  2C8G A;  4H03 A;  1PWU A;  4FXQ A;  1QS1 A;  1GXZ A;  1OG4 A;  1OJQ A;  1GY0 A;  4H0T A;  4PKQ A; 
#chains in the Genus database with same CATH homology
 5GTT A;  1G24 A;  2A9K B;  4GY2 A;  4H0Y A;  4WF6 A;  4XM8 A;  3BW8 A;  4PKV A;  4TR5 A;  2GWL A;  1UZI A;  5DZQ A;  4DV8 A;  2J3Z A;  2J3V A;  1PWW A;  4PKU A;  4PKR A;  2WN7 A;  2C8B X;  2C89 A;  1OG3 A;  4XM7 A;  3U0J A;  2C8H A;  2A78 B;  4PKS A;  1J7N A;  2GWM A;  2C8C A;  4GF1 A;  4ELN A;  5H03 A;  4XSH B;  5H04 A;  1PWV A;  1GXY A;  1GZF A;  1PWP A;  2BOV B;  2C8E E;  2J3X A;  1YQY A;  1ZXV A;  4XSG B;  4PKT A;  1OJZ A;  4XM6 A;  5D1T A;  5BWM B;  2WN5 A;  5D1S A;  3NTS A;  1QS2 A;  2WN4 A;  4PKW A;  2C8F E;  3BUZ A;  4H0V A;  1R45 A;  4H0X A;  1JKY A;  4FK7 A;  2C8A A;  1PWQ A;  1GIR A;  1R4B A;  4FML A;  1GIQ A;  1GZE A;  2WN6 A;  2C8D A;  1OG1 A;  2WN8 A;  5D1U A;  2C8G A;  4H03 A;  1PWU A;  4FXQ A;  1QS1 A;  1GXZ A;  1OG4 A;  1OJQ A;  1GY0 A;  4H0T A;  4PKQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...