2A78B

Crystal structure of the c3bot-rala complex reveals a novel type of action of a bacterial exoenzyme
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
207
structure length
207
Chain Sequence
TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding/transferase
molecule keywords Ras-related protein Ral-A
publication title Crystal structure of the C3bot-RalA complex reveals a novel type of action of a bacterial exoenzyme.
pubmed doi rcsb
source organism Homo sapiens
total genus 70
structure length 207
sequence length 207
ec nomenclature ec 2.4.2.-:
pdb deposition date 2005-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2a78B00
4PKTA 2WN4A 1QS1A 2WN8A 1OG4A 4H0YA 1GXZA 4XM7A 4TR5A 2BOVB 4PKUA 5D1TA 4GY2A 2GWLA 4PKQA 1OG1A 1PWQA 4DV8A 2C8HA 1GIQA 1J7NA 1YQYA 2C8BX 2J3ZA 2C89A 4XSHB 3BW8A 2C8GA 4H03A 1GXYA 1QS2A 1R45A 1PWUA 2C8EE 5GTTA 2WN7A 4H0XA 2GWMA 2C8CA 1JKYA 1OG3A 5BWMB 3U0JA 1OJQA 1GY0A 3NTSA 2A9KB 5D1SA 1PWVA 5DZQA 5D1UA 1UZIA 4H0VA 2C8AA 4XSGB 1PWPA 2C8DA 4PKSA 3BUZA 4FXQA 4FMLA 4XM8A 1GIRA 4WF6A 2C8FE 4PKRA 2J3XA 1GZEA 4PKWA 4FK7A 4GF1A 5H03A 4XM6A 5H04A 2A78B 2WN5A 4H0TA 1PWWA 4ELNA 4PKVA 2J3VA 1OJZA 1GZFA 1G24A 2WN6A 1ZXVA 1R4BA
chains in the Genus database with same CATH superfamily
4PKTA 2WN4A 1QS1A 2WN8A 1OG4A 4H0YA 1GXZA 4XM7A 4TR5A 2BOVB 4PKUA 5D1TA 4GY2A 2GWLA 4PKQA 1OG1A 1PWQA 4DV8A 2C8HA 1GIQA 1J7NA 1YQYA 2C8BX 2J3ZA 2C89A 4XSHB 3BW8A 2C8GA 4H03A 1GXYA 1QS2A 1R45A 1PWUA 2C8EE 5GTTA 2WN7A 4H0XA 2GWMA 2C8CA 1JKYA 1OG3A 5BWMB 3U0JA 1OJQA 1GY0A 3NTSA 2A9KB 5D1SA 1PWVA 5DZQA 5D1UA 1UZIA 4H0VA 2C8AA 4XSGB 1PWPA 2C8DA 4PKSA 3BUZA 4FXQA 4FMLA 4XM8A 1GIRA 4WF6A 2C8FE 4PKRA 2J3XA 1GZEA 4PKWA 4FK7A 4GF1A 5H03A 4XM6A 5H04A 2A78B 2WN5A 4H0TA 1PWWA 4ELNA 4PKVA 2J3VA 1OJZA 1GZFA 1G24A 2WN6A 1ZXVA 1R4BA
chains in the Genus database with same CATH topology
4PKTA 2WN4A 1QS1A 2WN8A 1OG4A 4H0YA 1GXZA 4XM7A 4TR5A 2BOVB 4PKUA 5D1TA 4GY2A 2GWLA 4PKQA 1OG1A 1PWQA 4DV8A 2C8HA 1GIQA 1J7NA 1YQYA 2C8BX 2J3ZA 2C89A 4XSHB 3BW8A 2C8GA 4H03A 1GXYA 1QS2A 1R45A 1PWUA 2C8EE 5GTTA 2WN7A 4H0XA 2GWMA 2C8CA 1JKYA 1OG3A 5BWMB 3U0JA 1OJQA 1GY0A 3NTSA 2A9KB 5D1SA 1PWVA 5DZQA 5D1UA 1UZIA 4H0VA 2C8AA 4XSGB 1PWPA 2C8DA 4PKSA 3BUZA 4FXQA 4FMLA 4XM8A 1GIRA 4WF6A 2C8FE 4PKRA 2J3XA 1GZEA 4PKWA 4FK7A 4GF1A 5H03A 4XM6A 5H04A 2A78B 2WN5A 4H0TA 1PWWA 4ELNA 4PKVA 2J3VA 1OJZA 1GZFA 1G24A 2WN6A 1ZXVA 1R4BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PKT A;  2WN4 A;  1QS1 A;  2WN8 A;  1OG4 A;  4H0Y A;  1GXZ A;  4XM7 A;  4TR5 A;  2BOV B;  4PKU A;  5D1T A;  4GY2 A;  2GWL A;  4PKQ A;  1OG1 A;  1PWQ A;  4DV8 A;  2C8H A;  1GIQ A;  1J7N A;  1YQY A;  2C8B X;  2J3Z A;  2C89 A;  4XSH B;  3BW8 A;  2C8G A;  4H03 A;  1GXY A;  1QS2 A;  1R45 A;  1PWU A;  2C8E E;  5GTT A;  2WN7 A;  4H0X A;  2GWM A;  2C8C A;  1JKY A;  1OG3 A;  5BWM B;  3U0J A;  1OJQ A;  1GY0 A;  3NTS A;  2A9K B;  5D1S A;  1PWV A;  5DZQ A;  5D1U A;  1UZI A;  4H0V A;  2C8A A;  4XSG B;  1PWP A;  2C8D A;  4PKS A;  3BUZ A;  4FXQ A;  4FML A;  4XM8 A;  1GIR A;  4WF6 A;  2C8F E;  4PKR A;  2J3X A;  1GZE A;  4PKW A;  4FK7 A;  4GF1 A;  5H03 A;  4XM6 A;  5H04 A;  2A78 B;  2WN5 A;  4H0T A;  1PWW A;  4ELN A;  4PKV A;  2J3V A;  1OJZ A;  1GZF A;  1G24 A;  2WN6 A;  1ZXV A;  1R4B A; 
#chains in the Genus database with same CATH topology
 4PKT A;  2WN4 A;  1QS1 A;  2WN8 A;  1OG4 A;  4H0Y A;  1GXZ A;  4XM7 A;  4TR5 A;  2BOV B;  4PKU A;  5D1T A;  4GY2 A;  2GWL A;  4PKQ A;  1OG1 A;  1PWQ A;  4DV8 A;  2C8H A;  1GIQ A;  1J7N A;  1YQY A;  2C8B X;  2J3Z A;  2C89 A;  4XSH B;  3BW8 A;  2C8G A;  4H03 A;  1GXY A;  1QS2 A;  1R45 A;  1PWU A;  2C8E E;  5GTT A;  2WN7 A;  4H0X A;  2GWM A;  2C8C A;  1JKY A;  1OG3 A;  5BWM B;  3U0J A;  1OJQ A;  1GY0 A;  3NTS A;  2A9K B;  5D1S A;  1PWV A;  5DZQ A;  5D1U A;  1UZI A;  4H0V A;  2C8A A;  4XSG B;  1PWP A;  2C8D A;  4PKS A;  3BUZ A;  4FXQ A;  4FML A;  4XM8 A;  1GIR A;  4WF6 A;  2C8F E;  4PKR A;  2J3X A;  1GZE A;  4PKW A;  4FK7 A;  4GF1 A;  5H03 A;  4XM6 A;  5H04 A;  2A78 B;  2WN5 A;  4H0T A;  1PWW A;  4ELN A;  4PKV A;  2J3V A;  1OJZ A;  1GZF A;  1G24 A;  2WN6 A;  1ZXV A;  1R4B A; 
#chains in the Genus database with same CATH homology
 4PKT A;  2WN4 A;  1QS1 A;  2WN8 A;  1OG4 A;  4H0Y A;  1GXZ A;  4XM7 A;  4TR5 A;  2BOV B;  4PKU A;  5D1T A;  4GY2 A;  2GWL A;  4PKQ A;  1OG1 A;  1PWQ A;  4DV8 A;  2C8H A;  1GIQ A;  1J7N A;  1YQY A;  2C8B X;  2J3Z A;  2C89 A;  4XSH B;  3BW8 A;  2C8G A;  4H03 A;  1GXY A;  1QS2 A;  1R45 A;  1PWU A;  2C8E E;  5GTT A;  2WN7 A;  4H0X A;  2GWM A;  2C8C A;  1JKY A;  1OG3 A;  5BWM B;  3U0J A;  1OJQ A;  1GY0 A;  3NTS A;  2A9K B;  5D1S A;  1PWV A;  5DZQ A;  5D1U A;  1UZI A;  4H0V A;  2C8A A;  4XSG B;  1PWP A;  2C8D A;  4PKS A;  3BUZ A;  4FXQ A;  4FML A;  4XM8 A;  1GIR A;  4WF6 A;  2C8F E;  4PKR A;  2J3X A;  1GZE A;  4PKW A;  4FK7 A;  4GF1 A;  5H03 A;  4XM6 A;  5H04 A;  2A78 B;  2WN5 A;  4H0T A;  1PWW A;  4ELN A;  4PKV A;  2J3V A;  1OJZ A;  1GZF A;  1G24 A;  2WN6 A;  1ZXV A;  1R4B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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