2A78B

Crystal structure of the c3bot-rala complex reveals a novel type of action of a bacterial exoenzyme
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
207
structure length
207
Chain Sequence
TYQEFTNIDQAKAWGNAQYKKYGLSKSEKEAIVSYTKSASEINGKLRQNKGVINGFPSNLIKQVELLDKSFNKMKTPENIMLFRGDDPAYLGTEFQNTLLNSNGTINKTAFEKAKAKFLNKDRLEYGYISTSLMNVSQFAGRPIITKFKVAKGSKAGYIDPISAFAGQLEMLLPRHSTYHIDDMRLSSDGKQIIITATMMGTAINPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ras-related protein Ral-A
publication title Crystal structure of the C3bot-RalA complex reveals a novel type of action of a bacterial exoenzyme.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Protein binding/transferase
total genus 70
structure length 207
sequence length 207
ec nomenclature ec 2.4.2.-:
pdb deposition date 2005-07-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2a78B00
4H0YA 1OG3A 4H0XA 4XM8A 2WN8A 2C8FE 2WN7A 5DZQA 1JKYA 4ELNA 4FMLA 2J3ZA 5H03A 2WN6A 5BWMB 1J7NA 4XSHB 4PKQA 2C89A 3NTSA 4GY2A 2WN5A 5D1SA 1R45A 3BUZA 4PKRA 1PWQA 1QS2A 1GXYA 1GZEA 1R4BA 1GIQA 2J3VA 2C8AA 1OG4A 4TR5A 1GY0A 4H03A 1OJZA 4XSGB 1YQYA 1PWVA 4PKTA 1PWWA 1G24A 1GZFA 5D1TA 1GIRA 1ZXVA 4FK7A 4DV8A 3BW8A 1PWPA 2C8GA 1QS1A 2BOVB 1OJQA 5GTTA 2A9KB 2C8EE 2C8CA 4PKSA 4PKVA 2C8BX 4GF1A 1UZIA 2GWLA 4WF6A 5D1UA 4PKWA 3U0JA 2C8DA 4H0VA 2J3XA 1OG1A 4FXQA 4H0TA 4XM7A 5H04A 4XM6A 2WN4A 1GXZA 2C8HA 1PWUA 2A78B 4PKUA 2GWMA
chains in the Genus database with same CATH superfamily
4H0YA 1OG3A 4H0XA 4XM8A 2WN8A 2C8FE 2WN7A 5DZQA 1JKYA 4ELNA 4FMLA 2J3ZA 5H03A 2WN6A 5BWMB 1J7NA 4XSHB 4PKQA 2C89A 3NTSA 4GY2A 2WN5A 5D1SA 1R45A 3BUZA 4PKRA 1PWQA 1QS2A 1GXYA 1GZEA 1R4BA 1GIQA 2J3VA 2C8AA 1OG4A 4TR5A 1GY0A 4H03A 1OJZA 4XSGB 1YQYA 1PWVA 4PKTA 1PWWA 1G24A 1GZFA 5D1TA 1GIRA 1ZXVA 4FK7A 4DV8A 3BW8A 1PWPA 2C8GA 1QS1A 2BOVB 1OJQA 5GTTA 2A9KB 2C8EE 2C8CA 4PKSA 4PKVA 2C8BX 4GF1A 1UZIA 2GWLA 4WF6A 5D1UA 4PKWA 3U0JA 2C8DA 4H0VA 2J3XA 1OG1A 4FXQA 4H0TA 4XM7A 5H04A 4XM6A 2WN4A 1GXZA 2C8HA 1PWUA 2A78B 4PKUA 2GWMA
chains in the Genus database with same CATH topology
4H0YA 1OG3A 4H0XA 4XM8A 2WN8A 2C8FE 2WN7A 5DZQA 1JKYA 4ELNA 4FMLA 2J3ZA 5H03A 2WN6A 5BWMB 1J7NA 4XSHB 4PKQA 2C89A 3NTSA 4GY2A 2WN5A 5D1SA 1R45A 3BUZA 4PKRA 1PWQA 1QS2A 1GXYA 1GZEA 1R4BA 1GIQA 2J3VA 2C8AA 1OG4A 4TR5A 1GY0A 4H03A 1OJZA 4XSGB 1YQYA 1PWVA 4PKTA 1PWWA 1G24A 1GZFA 5D1TA 1GIRA 1ZXVA 4FK7A 4DV8A 3BW8A 1PWPA 2C8GA 1QS1A 2BOVB 1OJQA 5GTTA 2A9KB 2C8EE 2C8CA 4PKSA 4PKVA 2C8BX 4GF1A 1UZIA 2GWLA 4WF6A 5D1UA 4PKWA 3U0JA 2C8DA 4H0VA 2J3XA 1OG1A 4FXQA 4H0TA 4XM7A 5H04A 4XM6A 2WN4A 1GXZA 2C8HA 1PWUA 2A78B 4PKUA 2GWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H0Y A;  1OG3 A;  4H0X A;  4XM8 A;  2WN8 A;  2C8F E;  2WN7 A;  5DZQ A;  1JKY A;  4ELN A;  4FML A;  2J3Z A;  5H03 A;  2WN6 A;  5BWM B;  1J7N A;  4XSH B;  4PKQ A;  2C89 A;  3NTS A;  4GY2 A;  2WN5 A;  5D1S A;  1R45 A;  3BUZ A;  4PKR A;  1PWQ A;  1QS2 A;  1GXY A;  1GZE A;  1R4B A;  1GIQ A;  2J3V A;  2C8A A;  1OG4 A;  4TR5 A;  1GY0 A;  4H03 A;  1OJZ A;  4XSG B;  1YQY A;  1PWV A;  4PKT A;  1PWW A;  1G24 A;  1GZF A;  5D1T A;  1GIR A;  1ZXV A;  4FK7 A;  4DV8 A;  3BW8 A;  1PWP A;  2C8G A;  1QS1 A;  2BOV B;  1OJQ A;  5GTT A;  2A9K B;  2C8E E;  2C8C A;  4PKS A;  4PKV A;  2C8B X;  4GF1 A;  1UZI A;  2GWL A;  4WF6 A;  5D1U A;  4PKW A;  3U0J A;  2C8D A;  4H0V A;  2J3X A;  1OG1 A;  4FXQ A;  4H0T A;  4XM7 A;  5H04 A;  4XM6 A;  2WN4 A;  1GXZ A;  2C8H A;  1PWU A;  2A78 B;  4PKU A;  2GWM A; 
#chains in the Genus database with same CATH topology
 4H0Y A;  1OG3 A;  4H0X A;  4XM8 A;  2WN8 A;  2C8F E;  2WN7 A;  5DZQ A;  1JKY A;  4ELN A;  4FML A;  2J3Z A;  5H03 A;  2WN6 A;  5BWM B;  1J7N A;  4XSH B;  4PKQ A;  2C89 A;  3NTS A;  4GY2 A;  2WN5 A;  5D1S A;  1R45 A;  3BUZ A;  4PKR A;  1PWQ A;  1QS2 A;  1GXY A;  1GZE A;  1R4B A;  1GIQ A;  2J3V A;  2C8A A;  1OG4 A;  4TR5 A;  1GY0 A;  4H03 A;  1OJZ A;  4XSG B;  1YQY A;  1PWV A;  4PKT A;  1PWW A;  1G24 A;  1GZF A;  5D1T A;  1GIR A;  1ZXV A;  4FK7 A;  4DV8 A;  3BW8 A;  1PWP A;  2C8G A;  1QS1 A;  2BOV B;  1OJQ A;  5GTT A;  2A9K B;  2C8E E;  2C8C A;  4PKS A;  4PKV A;  2C8B X;  4GF1 A;  1UZI A;  2GWL A;  4WF6 A;  5D1U A;  4PKW A;  3U0J A;  2C8D A;  4H0V A;  2J3X A;  1OG1 A;  4FXQ A;  4H0T A;  4XM7 A;  5H04 A;  4XM6 A;  2WN4 A;  1GXZ A;  2C8H A;  1PWU A;  2A78 B;  4PKU A;  2GWM A; 
#chains in the Genus database with same CATH homology
 4H0Y A;  1OG3 A;  4H0X A;  4XM8 A;  2WN8 A;  2C8F E;  2WN7 A;  5DZQ A;  1JKY A;  4ELN A;  4FML A;  2J3Z A;  5H03 A;  2WN6 A;  5BWM B;  1J7N A;  4XSH B;  4PKQ A;  2C89 A;  3NTS A;  4GY2 A;  2WN5 A;  5D1S A;  1R45 A;  3BUZ A;  4PKR A;  1PWQ A;  1QS2 A;  1GXY A;  1GZE A;  1R4B A;  1GIQ A;  2J3V A;  2C8A A;  1OG4 A;  4TR5 A;  1GY0 A;  4H03 A;  1OJZ A;  4XSG B;  1YQY A;  1PWV A;  4PKT A;  1PWW A;  1G24 A;  1GZF A;  5D1T A;  1GIR A;  1ZXV A;  4FK7 A;  4DV8 A;  3BW8 A;  1PWP A;  2C8G A;  1QS1 A;  2BOV B;  1OJQ A;  5GTT A;  2A9K B;  2C8E E;  2C8C A;  4PKS A;  4PKV A;  2C8B X;  4GF1 A;  1UZI A;  2GWL A;  4WF6 A;  5D1U A;  4PKW A;  3U0J A;  2C8D A;  4H0V A;  2J3X A;  1OG1 A;  4FXQ A;  4H0T A;  4XM7 A;  5H04 A;  4XM6 A;  2WN4 A;  1GXZ A;  2C8H A;  1PWU A;  2A78 B;  4PKU A;  2GWM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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