2WN6A

Structural basis for substrate recognition in the enzymatic component of adp-ribosyltransferase toxin cdta from clostridium difficile
Total Genus 136
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
404
structure length
404
Chain Sequence
LKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKETIQNKLFKQDGFKDISLWEPGKGDEKPTPLLMHLKLPRNTGMLPYTNTNNVSTLIEQGYSIKIDKIVRIVIDGKHYIKAEASVVSSLDFKDDVSKGDSWGKANYNDWSNKLTPNELADVNDYMRGGYTAINNYLISNGPVNNPNPELDSKITNIENALKREPIPTNLTVYRRSGPQEFGLTLTSPEYDFNKLENIDAFKSKWEGQALSYPNFISTSIGSVNMSAFAKRKIVLRITIPKGSPGAYLSAIPGYAGEYEVLLNHGSKFKINKIDSYKDGTITKLIVDATLIP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Basis for Substrate Recognition in the Enzymatic Component of Adp-Ribosyltransferase Toxin Cdta from Clostridium Difficile.
pubmed doi rcsb
molecule tags Transferase
source organism Clostridium difficile
molecule keywords ADP-RIBOSYLTRANSFERASE ENZYMATIC COMPONENT
total genus 136
structure length 404
sequence length 404
ec nomenclature
pdb deposition date 2009-07-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn6A02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2wn6A01
1YQYA 4H03A 2C8GA 1J7NA 1OJQA 1G24A 1PWVA 1ZXVA 3U0JA 5DZQA 1PWPA 4PKSA 4H0XA 1QS1A 4XM6A 5D1TA 4PKWA 4H0VA 4ELNA 2J3ZA 2C8AA 5H03A 5D1UA 2C8CA 2WN5A 2GWMA 3BW8A 4FK7A 2WN7A 2C8HA 1UZIA 1GZEA 4GY2A 4GF1A 1OG1A 4DV8A 2C8EE 2C8BX 4PKUA 4PKVA 2C8FE 4XM8A 1GIRA 1GIQA 4FXQA 4FMLA 1JKYA 1QS2A 2A9KB 2C8DA 4H0TA 4H0YA 2C89A 3BUZA 2WN8A 1GXYA 4XM7A 4PKRA 2A78B 2WN6A 5GTTA 4XSGB 1GXZA 1OJZA 4PKQA 4TR5A 4WF6A 5H04A 2BOVB 1PWWA 1R4BA 1OG3A 4PKTA 5D1SA 1OG4A 2WN4A 2J3VA 1PWUA 3NTSA 2GWLA 1GY0A 1R45A 2J3XA 1PWQA 1GZFA 4XSHB 5BWMB
chains in the Genus database with same CATH superfamily
1YQYA 4H03A 2C8GA 1J7NA 1OJQA 1G24A 1PWVA 1ZXVA 3U0JA 5DZQA 1PWPA 4PKSA 4H0XA 1QS1A 4XM6A 5D1TA 4PKWA 4H0VA 4ELNA 2J3ZA 2C8AA 5H03A 5D1UA 2C8CA 2WN5A 2GWMA 3BW8A 4FK7A 2WN7A 2C8HA 1UZIA 1GZEA 4GY2A 4GF1A 1OG1A 4DV8A 2C8EE 2C8BX 4PKUA 4PKVA 2C8FE 4XM8A 1GIRA 1GIQA 4FXQA 4FMLA 1JKYA 1QS2A 2A9KB 2C8DA 4H0TA 4H0YA 2C89A 3BUZA 2WN8A 1GXYA 4XM7A 4PKRA 2A78B 2WN6A 5GTTA 4XSGB 1GXZA 1OJZA 4PKQA 4TR5A 4WF6A 5H04A 2BOVB 1PWWA 1R4BA 1OG3A 4PKTA 5D1SA 1OG4A 2WN4A 2J3VA 1PWUA 3NTSA 2GWLA 1GY0A 1R45A 2J3XA 1PWQA 1GZFA 4XSHB 5BWMB
chains in the Genus database with same CATH topology
1YQYA 4H03A 2C8GA 1J7NA 1OJQA 1G24A 1PWVA 1ZXVA 3U0JA 5DZQA 1PWPA 4PKSA 4H0XA 1QS1A 4XM6A 5D1TA 4PKWA 4H0VA 4ELNA 2J3ZA 2C8AA 5H03A 5D1UA 2C8CA 2WN5A 2GWMA 3BW8A 4FK7A 2WN7A 2C8HA 1UZIA 1GZEA 4GY2A 4GF1A 1OG1A 4DV8A 2C8EE 2C8BX 4PKUA 4PKVA 2C8FE 4XM8A 1GIRA 1GIQA 4FXQA 4FMLA 1JKYA 1QS2A 2A9KB 2C8DA 4H0TA 4H0YA 2C89A 3BUZA 2WN8A 1GXYA 4XM7A 4PKRA 2A78B 2WN6A 5GTTA 4XSGB 1GXZA 1OJZA 4PKQA 4TR5A 4WF6A 5H04A 2BOVB 1PWWA 1R4BA 1OG3A 4PKTA 5D1SA 1OG4A 2WN4A 2J3VA 1PWUA 3NTSA 2GWLA 1GY0A 1R45A 2J3XA 1PWQA 1GZFA 4XSHB 5BWMB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQY A;  4H03 A;  2C8G A;  1J7N A;  1OJQ A;  1G24 A;  1PWV A;  1ZXV A;  3U0J A;  5DZQ A;  1PWP A;  4PKS A;  4H0X A;  1QS1 A;  4XM6 A;  5D1T A;  4PKW A;  4H0V A;  4ELN A;  2J3Z A;  2C8A A;  5H03 A;  5D1U A;  2C8C A;  2WN5 A;  2GWM A;  3BW8 A;  4FK7 A;  2WN7 A;  2C8H A;  1UZI A;  1GZE A;  4GY2 A;  4GF1 A;  1OG1 A;  4DV8 A;  2C8E E;  2C8B X;  4PKU A;  4PKV A;  2C8F E;  4XM8 A;  1GIR A;  1GIQ A;  4FXQ A;  4FML A;  1JKY A;  1QS2 A;  2A9K B;  2C8D A;  4H0T A;  4H0Y A;  2C89 A;  3BUZ A;  2WN8 A;  1GXY A;  4XM7 A;  4PKR A;  2A78 B;  2WN6 A;  5GTT A;  4XSG B;  1GXZ A;  1OJZ A;  4PKQ A;  4TR5 A;  4WF6 A;  5H04 A;  2BOV B;  1PWW A;  1R4B A;  1OG3 A;  4PKT A;  5D1S A;  1OG4 A;  2WN4 A;  2J3V A;  1PWU A;  3NTS A;  2GWL A;  1GY0 A;  1R45 A;  2J3X A;  1PWQ A;  1GZF A;  4XSH B;  5BWM B; 
#chains in the Genus database with same CATH topology
 1YQY A;  4H03 A;  2C8G A;  1J7N A;  1OJQ A;  1G24 A;  1PWV A;  1ZXV A;  3U0J A;  5DZQ A;  1PWP A;  4PKS A;  4H0X A;  1QS1 A;  4XM6 A;  5D1T A;  4PKW A;  4H0V A;  4ELN A;  2J3Z A;  2C8A A;  5H03 A;  5D1U A;  2C8C A;  2WN5 A;  2GWM A;  3BW8 A;  4FK7 A;  2WN7 A;  2C8H A;  1UZI A;  1GZE A;  4GY2 A;  4GF1 A;  1OG1 A;  4DV8 A;  2C8E E;  2C8B X;  4PKU A;  4PKV A;  2C8F E;  4XM8 A;  1GIR A;  1GIQ A;  4FXQ A;  4FML A;  1JKY A;  1QS2 A;  2A9K B;  2C8D A;  4H0T A;  4H0Y A;  2C89 A;  3BUZ A;  2WN8 A;  1GXY A;  4XM7 A;  4PKR A;  2A78 B;  2WN6 A;  5GTT A;  4XSG B;  1GXZ A;  1OJZ A;  4PKQ A;  4TR5 A;  4WF6 A;  5H04 A;  2BOV B;  1PWW A;  1R4B A;  1OG3 A;  4PKT A;  5D1S A;  1OG4 A;  2WN4 A;  2J3V A;  1PWU A;  3NTS A;  2GWL A;  1GY0 A;  1R45 A;  2J3X A;  1PWQ A;  1GZF A;  4XSH B;  5BWM B; 
#chains in the Genus database with same CATH homology
 1YQY A;  4H03 A;  2C8G A;  1J7N A;  1OJQ A;  1G24 A;  1PWV A;  1ZXV A;  3U0J A;  5DZQ A;  1PWP A;  4PKS A;  4H0X A;  1QS1 A;  4XM6 A;  5D1T A;  4PKW A;  4H0V A;  4ELN A;  2J3Z A;  2C8A A;  5H03 A;  5D1U A;  2C8C A;  2WN5 A;  2GWM A;  3BW8 A;  4FK7 A;  2WN7 A;  2C8H A;  1UZI A;  1GZE A;  4GY2 A;  4GF1 A;  1OG1 A;  4DV8 A;  2C8E E;  2C8B X;  4PKU A;  4PKV A;  2C8F E;  4XM8 A;  1GIR A;  1GIQ A;  4FXQ A;  4FML A;  1JKY A;  1QS2 A;  2A9K B;  2C8D A;  4H0T A;  4H0Y A;  2C89 A;  3BUZ A;  2WN8 A;  1GXY A;  4XM7 A;  4PKR A;  2A78 B;  2WN6 A;  5GTT A;  4XSG B;  1GXZ A;  1OJZ A;  4PKQ A;  4TR5 A;  4WF6 A;  5H04 A;  2BOV B;  1PWW A;  1R4B A;  1OG3 A;  4PKT A;  5D1S A;  1OG4 A;  2WN4 A;  2J3V A;  1PWU A;  3NTS A;  2GWL A;  1GY0 A;  1R45 A;  2J3X A;  1PWQ A;  1GZF A;  4XSH B;  5BWM B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...