2J3ZA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 6.1
Total Genus 143
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKKWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENRNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Toxin
molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA01
5H04A 1OJZA 4PKUA 4XM7A 5D1TA 2WN8A 2WN4A 1PWUA 4XM6A 4XM8A 1YQYA 1PWWA 4FK7A 4DV8A 1QS1A 2C8AA 1OG1A 1R4BA 5GTTA 3U0JA 2C8HA 3NTSA 4H0TA 1OG4A 1OJQA 2J3XA 2C8BX 4H0XA 2C8FE 5DZQA 4PKWA 1OG3A 4H0YA 2C8DA 4XSGB 1GIQA 1GZFA 2GWLA 5D1UA 2A78B 2C8CA 3BW8A 1ZXVA 4PKRA 1PWVA 1GXZA 1J7NA 2GWMA 1QS2A 1G24A 1GZEA 4ELNA 5D1SA 5H03A 4H0VA 2J3ZA 2C89A 4PKQA 2C8EE 4H03A 2C8GA 4PKSA 1GY0A 4TR5A 1PWQA 2J3VA 2WN7A 4PKTA 4FMLA 3BUZA 5BWMB 2WN5A 1PWPA 1GIRA 4GY2A 1JKYA 4XSHB 2A9KB 2BOVB 1R45A 1UZIA 4WF6A 4FXQA 4GF1A 4PKVA 2WN6A 1GXYA
chains in the Genus database with same CATH superfamily
5H04A 1OJZA 4PKUA 4XM7A 5D1TA 2WN8A 2WN4A 1PWUA 4XM6A 4XM8A 1YQYA 1PWWA 4FK7A 4DV8A 1QS1A 2C8AA 1OG1A 1R4BA 5GTTA 3U0JA 2C8HA 3NTSA 4H0TA 1OG4A 1OJQA 2J3XA 2C8BX 4H0XA 2C8FE 5DZQA 4PKWA 1OG3A 4H0YA 2C8DA 4XSGB 1GIQA 1GZFA 2GWLA 5D1UA 2A78B 2C8CA 3BW8A 1ZXVA 4PKRA 1PWVA 1GXZA 1J7NA 2GWMA 1QS2A 1G24A 1GZEA 4ELNA 5D1SA 5H03A 4H0VA 2J3ZA 2C89A 4PKQA 2C8EE 4H03A 2C8GA 4PKSA 1GY0A 4TR5A 1PWQA 2J3VA 2WN7A 4PKTA 4FMLA 3BUZA 5BWMB 2WN5A 1PWPA 1GIRA 4GY2A 1JKYA 4XSHB 2A9KB 2BOVB 1R45A 1UZIA 4WF6A 4FXQA 4GF1A 4PKVA 2WN6A 1GXYA
chains in the Genus database with same CATH topology
5H04A 1OJZA 4PKUA 4XM7A 5D1TA 2WN8A 2WN4A 1PWUA 4XM6A 4XM8A 1YQYA 1PWWA 4FK7A 4DV8A 1QS1A 2C8AA 1OG1A 1R4BA 5GTTA 3U0JA 2C8HA 3NTSA 4H0TA 1OG4A 1OJQA 2J3XA 2C8BX 4H0XA 2C8FE 5DZQA 4PKWA 1OG3A 4H0YA 2C8DA 4XSGB 1GIQA 1GZFA 2GWLA 5D1UA 2A78B 2C8CA 3BW8A 1ZXVA 4PKRA 1PWVA 1GXZA 1J7NA 2GWMA 1QS2A 1G24A 1GZEA 4ELNA 5D1SA 5H03A 4H0VA 2J3ZA 2C89A 4PKQA 2C8EE 4H03A 2C8GA 4PKSA 1GY0A 4TR5A 1PWQA 2J3VA 2WN7A 4PKTA 4FMLA 3BUZA 5BWMB 2WN5A 1PWPA 1GIRA 4GY2A 1JKYA 4XSHB 2A9KB 2BOVB 1R45A 1UZIA 4WF6A 4FXQA 4GF1A 4PKVA 2WN6A 1GXYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H04 A;  1OJZ A;  4PKU A;  4XM7 A;  5D1T A;  2WN8 A;  2WN4 A;  1PWU A;  4XM6 A;  4XM8 A;  1YQY A;  1PWW A;  4FK7 A;  4DV8 A;  1QS1 A;  2C8A A;  1OG1 A;  1R4B A;  5GTT A;  3U0J A;  2C8H A;  3NTS A;  4H0T A;  1OG4 A;  1OJQ A;  2J3X A;  2C8B X;  4H0X A;  2C8F E;  5DZQ A;  4PKW A;  1OG3 A;  4H0Y A;  2C8D A;  4XSG B;  1GIQ A;  1GZF A;  2GWL A;  5D1U A;  2A78 B;  2C8C A;  3BW8 A;  1ZXV A;  4PKR A;  1PWV A;  1GXZ A;  1J7N A;  2GWM A;  1QS2 A;  1G24 A;  1GZE A;  4ELN A;  5D1S A;  5H03 A;  4H0V A;  2J3Z A;  2C89 A;  4PKQ A;  2C8E E;  4H03 A;  2C8G A;  4PKS A;  1GY0 A;  4TR5 A;  1PWQ A;  2J3V A;  2WN7 A;  4PKT A;  4FML A;  3BUZ A;  5BWM B;  2WN5 A;  1PWP A;  1GIR A;  4GY2 A;  1JKY A;  4XSH B;  2A9K B;  2BOV B;  1R45 A;  1UZI A;  4WF6 A;  4FXQ A;  4GF1 A;  4PKV A;  2WN6 A;  1GXY A; 
#chains in the Genus database with same CATH topology
 5H04 A;  1OJZ A;  4PKU A;  4XM7 A;  5D1T A;  2WN8 A;  2WN4 A;  1PWU A;  4XM6 A;  4XM8 A;  1YQY A;  1PWW A;  4FK7 A;  4DV8 A;  1QS1 A;  2C8A A;  1OG1 A;  1R4B A;  5GTT A;  3U0J A;  2C8H A;  3NTS A;  4H0T A;  1OG4 A;  1OJQ A;  2J3X A;  2C8B X;  4H0X A;  2C8F E;  5DZQ A;  4PKW A;  1OG3 A;  4H0Y A;  2C8D A;  4XSG B;  1GIQ A;  1GZF A;  2GWL A;  5D1U A;  2A78 B;  2C8C A;  3BW8 A;  1ZXV A;  4PKR A;  1PWV A;  1GXZ A;  1J7N A;  2GWM A;  1QS2 A;  1G24 A;  1GZE A;  4ELN A;  5D1S A;  5H03 A;  4H0V A;  2J3Z A;  2C89 A;  4PKQ A;  2C8E E;  4H03 A;  2C8G A;  4PKS A;  1GY0 A;  4TR5 A;  1PWQ A;  2J3V A;  2WN7 A;  4PKT A;  4FML A;  3BUZ A;  5BWM B;  2WN5 A;  1PWP A;  1GIR A;  4GY2 A;  1JKY A;  4XSH B;  2A9K B;  2BOV B;  1R45 A;  1UZI A;  4WF6 A;  4FXQ A;  4GF1 A;  4PKV A;  2WN6 A;  1GXY A; 
#chains in the Genus database with same CATH homology
 5H04 A;  1OJZ A;  4PKU A;  4XM7 A;  5D1T A;  2WN8 A;  2WN4 A;  1PWU A;  4XM6 A;  4XM8 A;  1YQY A;  1PWW A;  4FK7 A;  4DV8 A;  1QS1 A;  2C8A A;  1OG1 A;  1R4B A;  5GTT A;  3U0J A;  2C8H A;  3NTS A;  4H0T A;  1OG4 A;  1OJQ A;  2J3X A;  2C8B X;  4H0X A;  2C8F E;  5DZQ A;  4PKW A;  1OG3 A;  4H0Y A;  2C8D A;  4XSG B;  1GIQ A;  1GZF A;  2GWL A;  5D1U A;  2A78 B;  2C8C A;  3BW8 A;  1ZXV A;  4PKR A;  1PWV A;  1GXZ A;  1J7N A;  2GWM A;  1QS2 A;  1G24 A;  1GZE A;  4ELN A;  5D1S A;  5H03 A;  4H0V A;  2J3Z A;  2C89 A;  4PKQ A;  2C8E E;  4H03 A;  2C8G A;  4PKS A;  1GY0 A;  4TR5 A;  1PWQ A;  2J3V A;  2WN7 A;  4PKT A;  4FML A;  3BUZ A;  5BWM B;  2WN5 A;  1PWP A;  1GIR A;  4GY2 A;  1JKY A;  4XSH B;  2A9K B;  2BOV B;  1R45 A;  1UZI A;  4WF6 A;  4FXQ A;  4GF1 A;  4PKV A;  2WN6 A;  1GXY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...