2J3ZA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 6.1
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKKWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENRNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
molecule tags Toxin
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA01
1OG1A 4H0YA 1GZEA 1R4BA 1UZIA 4PKTA 4PKSA 2C8GA 4GY2A 2WN8A 5D1UA 1G24A 1GXZA 2J3XA 1PWUA 2WN7A 5GTTA 2C8AA 2C89A 1GIQA 2GWLA 4FK7A 1PWVA 4PKQA 4FMLA 1YQYA 2C8CA 4FXQA 5H03A 4PKWA 5H04A 4XSHB 4H03A 4XM7A 4PKVA 1PWPA 3NTSA 1OJZA 2A9KB 2GWMA 2WN6A 1GIRA 1QS1A 4XM8A 2WN5A 5BWMB 1GXYA 4PKRA 2J3ZA 1QS2A 3U0JA 1JKYA 2BOVB 2C8EE 4H0XA 2A78B 1OJQA 3BW8A 5D1SA 1GZFA 1R45A 3BUZA 2C8DA 1PWQA 1GY0A 4XSGB 1PWWA 4ELNA 5D1TA 4PKUA 4TR5A 4H0TA 4GF1A 4WF6A 2J3VA 4DV8A 1OG4A 5DZQA 4H0VA 4XM6A 1ZXVA 2WN4A 2C8BX 1J7NA 2C8HA 2C8FE 1OG3A
chains in the Genus database with same CATH superfamily
1OG1A 4H0YA 1GZEA 1R4BA 1UZIA 4PKTA 4PKSA 2C8GA 4GY2A 2WN8A 5D1UA 1G24A 1GXZA 2J3XA 1PWUA 2WN7A 5GTTA 2C8AA 2C89A 1GIQA 2GWLA 4FK7A 1PWVA 4PKQA 4FMLA 1YQYA 2C8CA 4FXQA 5H03A 4PKWA 5H04A 4XSHB 4H03A 4XM7A 4PKVA 1PWPA 3NTSA 1OJZA 2A9KB 2GWMA 2WN6A 1GIRA 1QS1A 4XM8A 2WN5A 5BWMB 1GXYA 4PKRA 2J3ZA 1QS2A 3U0JA 1JKYA 2BOVB 2C8EE 4H0XA 2A78B 1OJQA 3BW8A 5D1SA 1GZFA 1R45A 3BUZA 2C8DA 1PWQA 1GY0A 4XSGB 1PWWA 4ELNA 5D1TA 4PKUA 4TR5A 4H0TA 4GF1A 4WF6A 2J3VA 4DV8A 1OG4A 5DZQA 4H0VA 4XM6A 1ZXVA 2WN4A 2C8BX 1J7NA 2C8HA 2C8FE 1OG3A
chains in the Genus database with same CATH topology
1OG1A 4H0YA 1GZEA 1R4BA 1UZIA 4PKTA 4PKSA 2C8GA 4GY2A 2WN8A 5D1UA 1G24A 1GXZA 2J3XA 1PWUA 2WN7A 5GTTA 2C8AA 2C89A 1GIQA 2GWLA 4FK7A 1PWVA 4PKQA 4FMLA 1YQYA 2C8CA 4FXQA 5H03A 4PKWA 5H04A 4XSHB 4H03A 4XM7A 4PKVA 1PWPA 3NTSA 1OJZA 2A9KB 2GWMA 2WN6A 1GIRA 1QS1A 4XM8A 2WN5A 5BWMB 1GXYA 4PKRA 2J3ZA 1QS2A 3U0JA 1JKYA 2BOVB 2C8EE 4H0XA 2A78B 1OJQA 3BW8A 5D1SA 1GZFA 1R45A 3BUZA 2C8DA 1PWQA 1GY0A 4XSGB 1PWWA 4ELNA 5D1TA 4PKUA 4TR5A 4H0TA 4GF1A 4WF6A 2J3VA 4DV8A 1OG4A 5DZQA 4H0VA 4XM6A 1ZXVA 2WN4A 2C8BX 1J7NA 2C8HA 2C8FE 1OG3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OG1 A;  4H0Y A;  1GZE A;  1R4B A;  1UZI A;  4PKT A;  4PKS A;  2C8G A;  4GY2 A;  2WN8 A;  5D1U A;  1G24 A;  1GXZ A;  2J3X A;  1PWU A;  2WN7 A;  5GTT A;  2C8A A;  2C89 A;  1GIQ A;  2GWL A;  4FK7 A;  1PWV A;  4PKQ A;  4FML A;  1YQY A;  2C8C A;  4FXQ A;  5H03 A;  4PKW A;  5H04 A;  4XSH B;  4H03 A;  4XM7 A;  4PKV A;  1PWP A;  3NTS A;  1OJZ A;  2A9K B;  2GWM A;  2WN6 A;  1GIR A;  1QS1 A;  4XM8 A;  2WN5 A;  5BWM B;  1GXY A;  4PKR A;  2J3Z A;  1QS2 A;  3U0J A;  1JKY A;  2BOV B;  2C8E E;  4H0X A;  2A78 B;  1OJQ A;  3BW8 A;  5D1S A;  1GZF A;  1R45 A;  3BUZ A;  2C8D A;  1PWQ A;  1GY0 A;  4XSG B;  1PWW A;  4ELN A;  5D1T A;  4PKU A;  4TR5 A;  4H0T A;  4GF1 A;  4WF6 A;  2J3V A;  4DV8 A;  1OG4 A;  5DZQ A;  4H0V A;  4XM6 A;  1ZXV A;  2WN4 A;  2C8B X;  1J7N A;  2C8H A;  2C8F E;  1OG3 A; 
#chains in the Genus database with same CATH topology
 1OG1 A;  4H0Y A;  1GZE A;  1R4B A;  1UZI A;  4PKT A;  4PKS A;  2C8G A;  4GY2 A;  2WN8 A;  5D1U A;  1G24 A;  1GXZ A;  2J3X A;  1PWU A;  2WN7 A;  5GTT A;  2C8A A;  2C89 A;  1GIQ A;  2GWL A;  4FK7 A;  1PWV A;  4PKQ A;  4FML A;  1YQY A;  2C8C A;  4FXQ A;  5H03 A;  4PKW A;  5H04 A;  4XSH B;  4H03 A;  4XM7 A;  4PKV A;  1PWP A;  3NTS A;  1OJZ A;  2A9K B;  2GWM A;  2WN6 A;  1GIR A;  1QS1 A;  4XM8 A;  2WN5 A;  5BWM B;  1GXY A;  4PKR A;  2J3Z A;  1QS2 A;  3U0J A;  1JKY A;  2BOV B;  2C8E E;  4H0X A;  2A78 B;  1OJQ A;  3BW8 A;  5D1S A;  1GZF A;  1R45 A;  3BUZ A;  2C8D A;  1PWQ A;  1GY0 A;  4XSG B;  1PWW A;  4ELN A;  5D1T A;  4PKU A;  4TR5 A;  4H0T A;  4GF1 A;  4WF6 A;  2J3V A;  4DV8 A;  1OG4 A;  5DZQ A;  4H0V A;  4XM6 A;  1ZXV A;  2WN4 A;  2C8B X;  1J7N A;  2C8H A;  2C8F E;  1OG3 A; 
#chains in the Genus database with same CATH homology
 1OG1 A;  4H0Y A;  1GZE A;  1R4B A;  1UZI A;  4PKT A;  4PKS A;  2C8G A;  4GY2 A;  2WN8 A;  5D1U A;  1G24 A;  1GXZ A;  2J3X A;  1PWU A;  2WN7 A;  5GTT A;  2C8A A;  2C89 A;  1GIQ A;  2GWL A;  4FK7 A;  1PWV A;  4PKQ A;  4FML A;  1YQY A;  2C8C A;  4FXQ A;  5H03 A;  4PKW A;  5H04 A;  4XSH B;  4H03 A;  4XM7 A;  4PKV A;  1PWP A;  3NTS A;  1OJZ A;  2A9K B;  2GWM A;  2WN6 A;  1GIR A;  1QS1 A;  4XM8 A;  2WN5 A;  5BWM B;  1GXY A;  4PKR A;  2J3Z A;  1QS2 A;  3U0J A;  1JKY A;  2BOV B;  2C8E E;  4H0X A;  2A78 B;  1OJQ A;  3BW8 A;  5D1S A;  1GZF A;  1R45 A;  3BUZ A;  2C8D A;  1PWQ A;  1GY0 A;  4XSG B;  1PWW A;  4ELN A;  5D1T A;  4PKU A;  4TR5 A;  4H0T A;  4GF1 A;  4WF6 A;  2J3V A;  4DV8 A;  1OG4 A;  5DZQ A;  4H0V A;  4XM6 A;  1ZXV A;  2WN4 A;  2C8B X;  1J7N A;  2C8H A;  2C8F E;  1OG3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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