2J3ZA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 6.1
Total Genus 143
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
143
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKKWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENRNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Clostridium botulinum
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
molecule keywords C2 TOXIN COMPONENT I
total genus 143
structure length 430
sequence length 430
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3zA01
2WN5A 2BOVB 4H03A 1PWQA 4FXQA 1J7NA 4H0YA 1GIRA 4XM7A 4WF6A 2GWMA 2WN8A 3BW8A 2A78B 1OJQA 2A9KB 5BWMB 1GY0A 2WN4A 1R4BA 1PWPA 2J3VA 5GTTA 4H0XA 4PKUA 4H0VA 1OG1A 3BUZA 3U0JA 4FMLA 1GXYA 2C8GA 1PWVA 1ZXVA 5H03A 4XSHB 4FK7A 4GF1A 2J3XA 1OJZA 2C8EE 2J3ZA 4PKTA 4XSGB 5D1UA 4PKQA 1UZIA 1G24A 2C8AA 4TR5A 2C8HA 4XM8A 1GZFA 1QS2A 1YQYA 2GWLA 5D1SA 2C89A 1JKYA 1OG4A 1GXZA 4DV8A 1R45A 2C8CA 4PKWA 1GIQA 5D1TA 2C8FE 2C8BX 4PKSA 3NTSA 4ELNA 4XM6A 5H04A 1PWUA 4GY2A 1PWWA 2WN6A 5DZQA 1QS1A 2C8DA 4PKVA 4H0TA 1OG3A 4PKRA 1GZEA 2WN7A
chains in the Genus database with same CATH superfamily
2WN5A 2BOVB 4H03A 1PWQA 4FXQA 1J7NA 4H0YA 1GIRA 4XM7A 4WF6A 2GWMA 2WN8A 3BW8A 2A78B 1OJQA 2A9KB 5BWMB 1GY0A 2WN4A 1R4BA 1PWPA 2J3VA 5GTTA 4H0XA 4PKUA 4H0VA 1OG1A 3BUZA 3U0JA 4FMLA 1GXYA 2C8GA 1PWVA 1ZXVA 5H03A 4XSHB 4FK7A 4GF1A 2J3XA 1OJZA 2C8EE 2J3ZA 4PKTA 4XSGB 5D1UA 4PKQA 1UZIA 1G24A 2C8AA 4TR5A 2C8HA 4XM8A 1GZFA 1QS2A 1YQYA 2GWLA 5D1SA 2C89A 1JKYA 1OG4A 1GXZA 4DV8A 1R45A 2C8CA 4PKWA 1GIQA 5D1TA 2C8FE 2C8BX 4PKSA 3NTSA 4ELNA 4XM6A 5H04A 1PWUA 4GY2A 1PWWA 2WN6A 5DZQA 1QS1A 2C8DA 4PKVA 4H0TA 1OG3A 4PKRA 1GZEA 2WN7A
chains in the Genus database with same CATH topology
2WN5A 2BOVB 4H03A 1PWQA 4FXQA 1J7NA 4H0YA 1GIRA 4XM7A 4WF6A 2GWMA 2WN8A 3BW8A 2A78B 1OJQA 2A9KB 5BWMB 1GY0A 2WN4A 1R4BA 1PWPA 2J3VA 5GTTA 4H0XA 4PKUA 4H0VA 1OG1A 3BUZA 3U0JA 4FMLA 1GXYA 2C8GA 1PWVA 1ZXVA 5H03A 4XSHB 4FK7A 4GF1A 2J3XA 1OJZA 2C8EE 2J3ZA 4PKTA 4XSGB 5D1UA 4PKQA 1UZIA 1G24A 2C8AA 4TR5A 2C8HA 4XM8A 1GZFA 1QS2A 1YQYA 2GWLA 5D1SA 2C89A 1JKYA 1OG4A 1GXZA 4DV8A 1R45A 2C8CA 4PKWA 1GIQA 5D1TA 2C8FE 2C8BX 4PKSA 3NTSA 4ELNA 4XM6A 5H04A 1PWUA 4GY2A 1PWWA 2WN6A 5DZQA 1QS1A 2C8DA 4PKVA 4H0TA 1OG3A 4PKRA 1GZEA 2WN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WN5 A;  2BOV B;  4H03 A;  1PWQ A;  4FXQ A;  1J7N A;  4H0Y A;  1GIR A;  4XM7 A;  4WF6 A;  2GWM A;  2WN8 A;  3BW8 A;  2A78 B;  1OJQ A;  2A9K B;  5BWM B;  1GY0 A;  2WN4 A;  1R4B A;  1PWP A;  2J3V A;  5GTT A;  4H0X A;  4PKU A;  4H0V A;  1OG1 A;  3BUZ A;  3U0J A;  4FML A;  1GXY A;  2C8G A;  1PWV A;  1ZXV A;  5H03 A;  4XSH B;  4FK7 A;  4GF1 A;  2J3X A;  1OJZ A;  2C8E E;  2J3Z A;  4PKT A;  4XSG B;  5D1U A;  4PKQ A;  1UZI A;  1G24 A;  2C8A A;  4TR5 A;  2C8H A;  4XM8 A;  1GZF A;  1QS2 A;  1YQY A;  2GWL A;  5D1S A;  2C89 A;  1JKY A;  1OG4 A;  1GXZ A;  4DV8 A;  1R45 A;  2C8C A;  4PKW A;  1GIQ A;  5D1T A;  2C8F E;  2C8B X;  4PKS A;  3NTS A;  4ELN A;  4XM6 A;  5H04 A;  1PWU A;  4GY2 A;  1PWW A;  2WN6 A;  5DZQ A;  1QS1 A;  2C8D A;  4PKV A;  4H0T A;  1OG3 A;  4PKR A;  1GZE A;  2WN7 A; 
#chains in the Genus database with same CATH topology
 2WN5 A;  2BOV B;  4H03 A;  1PWQ A;  4FXQ A;  1J7N A;  4H0Y A;  1GIR A;  4XM7 A;  4WF6 A;  2GWM A;  2WN8 A;  3BW8 A;  2A78 B;  1OJQ A;  2A9K B;  5BWM B;  1GY0 A;  2WN4 A;  1R4B A;  1PWP A;  2J3V A;  5GTT A;  4H0X A;  4PKU A;  4H0V A;  1OG1 A;  3BUZ A;  3U0J A;  4FML A;  1GXY A;  2C8G A;  1PWV A;  1ZXV A;  5H03 A;  4XSH B;  4FK7 A;  4GF1 A;  2J3X A;  1OJZ A;  2C8E E;  2J3Z A;  4PKT A;  4XSG B;  5D1U A;  4PKQ A;  1UZI A;  1G24 A;  2C8A A;  4TR5 A;  2C8H A;  4XM8 A;  1GZF A;  1QS2 A;  1YQY A;  2GWL A;  5D1S A;  2C89 A;  1JKY A;  1OG4 A;  1GXZ A;  4DV8 A;  1R45 A;  2C8C A;  4PKW A;  1GIQ A;  5D1T A;  2C8F E;  2C8B X;  4PKS A;  3NTS A;  4ELN A;  4XM6 A;  5H04 A;  1PWU A;  4GY2 A;  1PWW A;  2WN6 A;  5DZQ A;  1QS1 A;  2C8D A;  4PKV A;  4H0T A;  1OG3 A;  4PKR A;  1GZE A;  2WN7 A; 
#chains in the Genus database with same CATH homology
 2WN5 A;  2BOV B;  4H03 A;  1PWQ A;  4FXQ A;  1J7N A;  4H0Y A;  1GIR A;  4XM7 A;  4WF6 A;  2GWM A;  2WN8 A;  3BW8 A;  2A78 B;  1OJQ A;  2A9K B;  5BWM B;  1GY0 A;  2WN4 A;  1R4B A;  1PWP A;  2J3V A;  5GTT A;  4H0X A;  4PKU A;  4H0V A;  1OG1 A;  3BUZ A;  3U0J A;  4FML A;  1GXY A;  2C8G A;  1PWV A;  1ZXV A;  5H03 A;  4XSH B;  4FK7 A;  4GF1 A;  2J3X A;  1OJZ A;  2C8E E;  2J3Z A;  4PKT A;  4XSG B;  5D1U A;  4PKQ A;  1UZI A;  1G24 A;  2C8A A;  4TR5 A;  2C8H A;  4XM8 A;  1GZF A;  1QS2 A;  1YQY A;  2GWL A;  5D1S A;  2C89 A;  1JKY A;  1OG4 A;  1GXZ A;  4DV8 A;  1R45 A;  2C8C A;  4PKW A;  1GIQ A;  5D1T A;  2C8F E;  2C8B X;  4PKS A;  3NTS A;  4ELN A;  4XM6 A;  5H04 A;  1PWU A;  4GY2 A;  1PWW A;  2WN6 A;  5DZQ A;  1QS1 A;  2C8D A;  4PKV A;  4H0T A;  1OG3 A;  4PKR A;  1GZE A;  2WN7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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