4ELNA

Crystal structure of the type iii effector xopai from xanthomonas axonopodis pv. citri
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
237
structure length
237
Chain Sequence
SPRPLSPLVELNTSDLIKQKKQLWQRVQHDGAQFRSTPEERKQFKTALITLWGEQYRPERQQRWNGMMQRMAQMKWNHPELKYMATEDLVALQAWTTDDYEVVQDVLEKEARPTAHGLAFAKCIISALHSLPEEYSYQGTVFTGEDQLPDWVSERYQERSITTDRRFFAASETKNASWQGMAVEWESNSTTGKRISMFSERPNEQEVLFPPGTRFQVTRIEENETHPRLKIYQSQIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Type III effector XopAI
publication title Crystal structure of the type III effector XopAI from Xanthomonas axonopodis pv. citri
rcsb
source organism Xanthomonas axonopodis pv. citri
molecule tags Unknown function
total genus 71
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2012-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01129 ART NAD:arginine ADP-ribosyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4elnA00
5GTTA 1GIRA 2A9KB 5H03A 1PWWA 2WN8A 1OJQA 1PWQA 2J3XA 5D1SA 2GWMA 5D1TA 2C89A 2C8EE 1OG1A 1QS2A 2WN4A 2C8CA 1GY0A 4PKSA 3BUZA 3U0JA 2J3VA 4XM7A 1J7NA 2GWLA 5D1UA 1R45A 1JKYA 1PWUA 4XSHB 4FMLA 1GXZA 1OG3A 2A78B 1OJZA 2C8DA 1GZFA 4PKTA 2C8BX 4PKQA 1G24A 4H0XA 1R4BA 2WN6A 4PKRA 1PWPA 4GY2A 1YQYA 1GZEA 4TR5A 4H0VA 1GXYA 1ZXVA 4XSGB 4H03A 4PKWA 4DV8A 4PKUA 4XM6A 5H04A 4ELNA 1OG4A 2WN5A 3BW8A 4PKVA 4H0YA 4FXQA 2BOVB 5BWMB 2C8FE 2C8HA 4H0TA 2J3ZA 5DZQA 4WF6A 4XM8A 1UZIA 2WN7A 1GIQA 2C8GA 4FK7A 4GF1A 1PWVA 3NTSA 1QS1A 2C8AA
chains in the Genus database with same CATH superfamily
5GTTA 1GIRA 2A9KB 5H03A 1PWWA 2WN8A 1OJQA 1PWQA 2J3XA 5D1SA 2GWMA 5D1TA 2C89A 2C8EE 1OG1A 1QS2A 2WN4A 2C8CA 1GY0A 4PKSA 3BUZA 3U0JA 2J3VA 4XM7A 1J7NA 2GWLA 5D1UA 1R45A 1JKYA 1PWUA 4XSHB 4FMLA 1GXZA 1OG3A 2A78B 1OJZA 2C8DA 1GZFA 4PKTA 2C8BX 4PKQA 1G24A 4H0XA 1R4BA 2WN6A 4PKRA 1PWPA 4GY2A 1YQYA 1GZEA 4TR5A 4H0VA 1GXYA 1ZXVA 4XSGB 4H03A 4PKWA 4DV8A 4PKUA 4XM6A 5H04A 4ELNA 1OG4A 2WN5A 3BW8A 4PKVA 4H0YA 4FXQA 2BOVB 5BWMB 2C8FE 2C8HA 4H0TA 2J3ZA 5DZQA 4WF6A 4XM8A 1UZIA 2WN7A 1GIQA 2C8GA 4FK7A 4GF1A 1PWVA 3NTSA 1QS1A 2C8AA
chains in the Genus database with same CATH topology
5GTTA 1GIRA 2A9KB 5H03A 1PWWA 2WN8A 1OJQA 1PWQA 2J3XA 5D1SA 2GWMA 5D1TA 2C89A 2C8EE 1OG1A 1QS2A 2WN4A 2C8CA 1GY0A 4PKSA 3BUZA 3U0JA 2J3VA 4XM7A 1J7NA 2GWLA 5D1UA 1R45A 1JKYA 1PWUA 4XSHB 4FMLA 1GXZA 1OG3A 2A78B 1OJZA 2C8DA 1GZFA 4PKTA 2C8BX 4PKQA 1G24A 4H0XA 1R4BA 2WN6A 4PKRA 1PWPA 4GY2A 1YQYA 1GZEA 4TR5A 4H0VA 1GXYA 1ZXVA 4XSGB 4H03A 4PKWA 4DV8A 4PKUA 4XM6A 5H04A 4ELNA 1OG4A 2WN5A 3BW8A 4PKVA 4H0YA 4FXQA 2BOVB 5BWMB 2C8FE 2C8HA 4H0TA 2J3ZA 5DZQA 4WF6A 4XM8A 1UZIA 2WN7A 1GIQA 2C8GA 4FK7A 4GF1A 1PWVA 3NTSA 1QS1A 2C8AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GTT A;  1GIR A;  2A9K B;  5H03 A;  1PWW A;  2WN8 A;  1OJQ A;  1PWQ A;  2J3X A;  5D1S A;  2GWM A;  5D1T A;  2C89 A;  2C8E E;  1OG1 A;  1QS2 A;  2WN4 A;  2C8C A;  1GY0 A;  4PKS A;  3BUZ A;  3U0J A;  2J3V A;  4XM7 A;  1J7N A;  2GWL A;  5D1U A;  1R45 A;  1JKY A;  1PWU A;  4XSH B;  4FML A;  1GXZ A;  1OG3 A;  2A78 B;  1OJZ A;  2C8D A;  1GZF A;  4PKT A;  2C8B X;  4PKQ A;  1G24 A;  4H0X A;  1R4B A;  2WN6 A;  4PKR A;  1PWP A;  4GY2 A;  1YQY A;  1GZE A;  4TR5 A;  4H0V A;  1GXY A;  1ZXV A;  4XSG B;  4H03 A;  4PKW A;  4DV8 A;  4PKU A;  4XM6 A;  5H04 A;  4ELN A;  1OG4 A;  2WN5 A;  3BW8 A;  4PKV A;  4H0Y A;  4FXQ A;  2BOV B;  5BWM B;  2C8F E;  2C8H A;  4H0T A;  2J3Z A;  5DZQ A;  4WF6 A;  4XM8 A;  1UZI A;  2WN7 A;  1GIQ A;  2C8G A;  4FK7 A;  4GF1 A;  1PWV A;  3NTS A;  1QS1 A;  2C8A A; 
#chains in the Genus database with same CATH topology
 5GTT A;  1GIR A;  2A9K B;  5H03 A;  1PWW A;  2WN8 A;  1OJQ A;  1PWQ A;  2J3X A;  5D1S A;  2GWM A;  5D1T A;  2C89 A;  2C8E E;  1OG1 A;  1QS2 A;  2WN4 A;  2C8C A;  1GY0 A;  4PKS A;  3BUZ A;  3U0J A;  2J3V A;  4XM7 A;  1J7N A;  2GWL A;  5D1U A;  1R45 A;  1JKY A;  1PWU A;  4XSH B;  4FML A;  1GXZ A;  1OG3 A;  2A78 B;  1OJZ A;  2C8D A;  1GZF A;  4PKT A;  2C8B X;  4PKQ A;  1G24 A;  4H0X A;  1R4B A;  2WN6 A;  4PKR A;  1PWP A;  4GY2 A;  1YQY A;  1GZE A;  4TR5 A;  4H0V A;  1GXY A;  1ZXV A;  4XSG B;  4H03 A;  4PKW A;  4DV8 A;  4PKU A;  4XM6 A;  5H04 A;  4ELN A;  1OG4 A;  2WN5 A;  3BW8 A;  4PKV A;  4H0Y A;  4FXQ A;  2BOV B;  5BWM B;  2C8F E;  2C8H A;  4H0T A;  2J3Z A;  5DZQ A;  4WF6 A;  4XM8 A;  1UZI A;  2WN7 A;  1GIQ A;  2C8G A;  4FK7 A;  4GF1 A;  1PWV A;  3NTS A;  1QS1 A;  2C8A A; 
#chains in the Genus database with same CATH homology
 5GTT A;  1GIR A;  2A9K B;  5H03 A;  1PWW A;  2WN8 A;  1OJQ A;  1PWQ A;  2J3X A;  5D1S A;  2GWM A;  5D1T A;  2C89 A;  2C8E E;  1OG1 A;  1QS2 A;  2WN4 A;  2C8C A;  1GY0 A;  4PKS A;  3BUZ A;  3U0J A;  2J3V A;  4XM7 A;  1J7N A;  2GWL A;  5D1U A;  1R45 A;  1JKY A;  1PWU A;  4XSH B;  4FML A;  1GXZ A;  1OG3 A;  2A78 B;  1OJZ A;  2C8D A;  1GZF A;  4PKT A;  2C8B X;  4PKQ A;  1G24 A;  4H0X A;  1R4B A;  2WN6 A;  4PKR A;  1PWP A;  4GY2 A;  1YQY A;  1GZE A;  4TR5 A;  4H0V A;  1GXY A;  1ZXV A;  4XSG B;  4H03 A;  4PKW A;  4DV8 A;  4PKU A;  4XM6 A;  5H04 A;  4ELN A;  1OG4 A;  2WN5 A;  3BW8 A;  4PKV A;  4H0Y A;  4FXQ A;  2BOV B;  5BWM B;  2C8F E;  2C8H A;  4H0T A;  2J3Z A;  5DZQ A;  4WF6 A;  4XM8 A;  1UZI A;  2WN7 A;  1GIQ A;  2C8G A;  4FK7 A;  4GF1 A;  1PWV A;  3NTS A;  1QS1 A;  2C8A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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