4ELNA

Crystal structure of the type iii effector xopai from xanthomonas axonopodis pv. citri
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
237
structure length
237
Chain Sequence
SPRPLSPLVELNTSDLIKQKKQLWQRVQHDGAQFRSTPEERKQFKTALITLWGEQYRPERQQRWNGMMQRMAQMKWNHPELKYMATEDLVALQAWTTDDYEVVQDVLEKEARPTAHGLAFAKCIISALHSLPEEYSYQGTVFTGEDQLPDWVSERYQERSITTDRRFFAASETKNASWQGMAVEWESNSTTGKRISMFSERPNEQEVLFPPGTRFQVTRIEENETHPRLKIYQSQIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Type III effector XopAI
publication title Crystal structure of the type III effector XopAI from Xanthomonas axonopodis pv. citri
rcsb
source organism Xanthomonas axonopodis pv. citri
total genus 71
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2012-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01129 ART NAD:arginine ADP-ribosyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4elnA00
5H03A 1R45A 4PKTA 2WN4A 1OJZA 5BWMB 1PWUA 4TR5A 2C8BX 3NTSA 3BUZA 5DZQA 2C89A 2C8HA 4DV8A 2WN5A 1UZIA 1JKYA 4XSGB 4GY2A 4PKQA 4XM8A 4PKUA 2WN8A 4XM7A 4PKVA 5GTTA 1GZFA 1GIQA 2C8AA 1GXYA 5H04A 1R4BA 2C8EE 1GZEA 1PWPA 4H0TA 1YQYA 4WF6A 1PWWA 4FMLA 1GIRA 2WN6A 1OG4A 2C8GA 2J3VA 1G24A 4H0XA 1OJQA 2BOVB 4XSHB 1OG3A 4FXQA 4H0VA 1GY0A 2A78B 4GF1A 4PKSA 2J3ZA 2J3XA 2WN7A 2C8CA 1J7NA 1ZXVA 4H03A 1QS1A 2GWMA 1PWQA 2A9KB 1QS2A 2C8FE 5D1SA 4XM6A 2C8DA 1GXZA 4FK7A 4H0YA 4PKWA 5D1UA 2GWLA 4PKRA 5D1TA 3U0JA 1OG1A 1PWVA 3BW8A 4ELNA
chains in the Genus database with same CATH superfamily
5H03A 1R45A 4PKTA 2WN4A 1OJZA 5BWMB 1PWUA 4TR5A 2C8BX 3NTSA 3BUZA 5DZQA 2C89A 2C8HA 4DV8A 2WN5A 1UZIA 1JKYA 4XSGB 4GY2A 4PKQA 4XM8A 4PKUA 2WN8A 4XM7A 4PKVA 5GTTA 1GZFA 1GIQA 2C8AA 1GXYA 5H04A 1R4BA 2C8EE 1GZEA 1PWPA 4H0TA 1YQYA 4WF6A 1PWWA 4FMLA 1GIRA 2WN6A 1OG4A 2C8GA 2J3VA 1G24A 4H0XA 1OJQA 2BOVB 4XSHB 1OG3A 4FXQA 4H0VA 1GY0A 2A78B 4GF1A 4PKSA 2J3ZA 2J3XA 2WN7A 2C8CA 1J7NA 1ZXVA 4H03A 1QS1A 2GWMA 1PWQA 2A9KB 1QS2A 2C8FE 5D1SA 4XM6A 2C8DA 1GXZA 4FK7A 4H0YA 4PKWA 5D1UA 2GWLA 4PKRA 5D1TA 3U0JA 1OG1A 1PWVA 3BW8A 4ELNA
chains in the Genus database with same CATH topology
5H03A 1R45A 4PKTA 2WN4A 1OJZA 5BWMB 1PWUA 4TR5A 2C8BX 3NTSA 3BUZA 5DZQA 2C89A 2C8HA 4DV8A 2WN5A 1UZIA 1JKYA 4XSGB 4GY2A 4PKQA 4XM8A 4PKUA 2WN8A 4XM7A 4PKVA 5GTTA 1GZFA 1GIQA 2C8AA 1GXYA 5H04A 1R4BA 2C8EE 1GZEA 1PWPA 4H0TA 1YQYA 4WF6A 1PWWA 4FMLA 1GIRA 2WN6A 1OG4A 2C8GA 2J3VA 1G24A 4H0XA 1OJQA 2BOVB 4XSHB 1OG3A 4FXQA 4H0VA 1GY0A 2A78B 4GF1A 4PKSA 2J3ZA 2J3XA 2WN7A 2C8CA 1J7NA 1ZXVA 4H03A 1QS1A 2GWMA 1PWQA 2A9KB 1QS2A 2C8FE 5D1SA 4XM6A 2C8DA 1GXZA 4FK7A 4H0YA 4PKWA 5D1UA 2GWLA 4PKRA 5D1TA 3U0JA 1OG1A 1PWVA 3BW8A 4ELNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5H03 A;  1R45 A;  4PKT A;  2WN4 A;  1OJZ A;  5BWM B;  1PWU A;  4TR5 A;  2C8B X;  3NTS A;  3BUZ A;  5DZQ A;  2C89 A;  2C8H A;  4DV8 A;  2WN5 A;  1UZI A;  1JKY A;  4XSG B;  4GY2 A;  4PKQ A;  4XM8 A;  4PKU A;  2WN8 A;  4XM7 A;  4PKV A;  5GTT A;  1GZF A;  1GIQ A;  2C8A A;  1GXY A;  5H04 A;  1R4B A;  2C8E E;  1GZE A;  1PWP A;  4H0T A;  1YQY A;  4WF6 A;  1PWW A;  4FML A;  1GIR A;  2WN6 A;  1OG4 A;  2C8G A;  2J3V A;  1G24 A;  4H0X A;  1OJQ A;  2BOV B;  4XSH B;  1OG3 A;  4FXQ A;  4H0V A;  1GY0 A;  2A78 B;  4GF1 A;  4PKS A;  2J3Z A;  2J3X A;  2WN7 A;  2C8C A;  1J7N A;  1ZXV A;  4H03 A;  1QS1 A;  2GWM A;  1PWQ A;  2A9K B;  1QS2 A;  2C8F E;  5D1S A;  4XM6 A;  2C8D A;  1GXZ A;  4FK7 A;  4H0Y A;  4PKW A;  5D1U A;  2GWL A;  4PKR A;  5D1T A;  3U0J A;  1OG1 A;  1PWV A;  3BW8 A;  4ELN A; 
#chains in the Genus database with same CATH topology
 5H03 A;  1R45 A;  4PKT A;  2WN4 A;  1OJZ A;  5BWM B;  1PWU A;  4TR5 A;  2C8B X;  3NTS A;  3BUZ A;  5DZQ A;  2C89 A;  2C8H A;  4DV8 A;  2WN5 A;  1UZI A;  1JKY A;  4XSG B;  4GY2 A;  4PKQ A;  4XM8 A;  4PKU A;  2WN8 A;  4XM7 A;  4PKV A;  5GTT A;  1GZF A;  1GIQ A;  2C8A A;  1GXY A;  5H04 A;  1R4B A;  2C8E E;  1GZE A;  1PWP A;  4H0T A;  1YQY A;  4WF6 A;  1PWW A;  4FML A;  1GIR A;  2WN6 A;  1OG4 A;  2C8G A;  2J3V A;  1G24 A;  4H0X A;  1OJQ A;  2BOV B;  4XSH B;  1OG3 A;  4FXQ A;  4H0V A;  1GY0 A;  2A78 B;  4GF1 A;  4PKS A;  2J3Z A;  2J3X A;  2WN7 A;  2C8C A;  1J7N A;  1ZXV A;  4H03 A;  1QS1 A;  2GWM A;  1PWQ A;  2A9K B;  1QS2 A;  2C8F E;  5D1S A;  4XM6 A;  2C8D A;  1GXZ A;  4FK7 A;  4H0Y A;  4PKW A;  5D1U A;  2GWL A;  4PKR A;  5D1T A;  3U0J A;  1OG1 A;  1PWV A;  3BW8 A;  4ELN A; 
#chains in the Genus database with same CATH homology
 5H03 A;  1R45 A;  4PKT A;  2WN4 A;  1OJZ A;  5BWM B;  1PWU A;  4TR5 A;  2C8B X;  3NTS A;  3BUZ A;  5DZQ A;  2C89 A;  2C8H A;  4DV8 A;  2WN5 A;  1UZI A;  1JKY A;  4XSG B;  4GY2 A;  4PKQ A;  4XM8 A;  4PKU A;  2WN8 A;  4XM7 A;  4PKV A;  5GTT A;  1GZF A;  1GIQ A;  2C8A A;  1GXY A;  5H04 A;  1R4B A;  2C8E E;  1GZE A;  1PWP A;  4H0T A;  1YQY A;  4WF6 A;  1PWW A;  4FML A;  1GIR A;  2WN6 A;  1OG4 A;  2C8G A;  2J3V A;  1G24 A;  4H0X A;  1OJQ A;  2BOV B;  4XSH B;  1OG3 A;  4FXQ A;  4H0V A;  1GY0 A;  2A78 B;  4GF1 A;  4PKS A;  2J3Z A;  2J3X A;  2WN7 A;  2C8C A;  1J7N A;  1ZXV A;  4H03 A;  1QS1 A;  2GWM A;  1PWQ A;  2A9K B;  1QS2 A;  2C8F E;  5D1S A;  4XM6 A;  2C8D A;  1GXZ A;  4FK7 A;  4H0Y A;  4PKW A;  5D1U A;  2GWL A;  4PKR A;  5D1T A;  3U0J A;  1OG1 A;  1PWV A;  3BW8 A;  4ELN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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