4ELNA

Crystal structure of the type iii effector xopai from xanthomonas axonopodis pv. citri
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
237
structure length
237
Chain Sequence
SPRPLSPLVELNTSDLIKQKKQLWQRVQHDGAQFRSTPEERKQFKTALITLWGEQYRPERQQRWNGMMQRMAQMKWNHPELKYMATEDLVALQAWTTDDYEVVQDVLEKEARPTAHGLAFAKCIISALHSLPEEYSYQGTVFTGEDQLPDWVSERYQERSITTDRRFFAASETKNASWQGMAVEWESNSTTGKRISMFSERPNEQEVLFPPGTRFQVTRIEENETHPRLKIYQSQIA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Xanthomonas axonopodis pv. citri
publication title Crystal structure of the type III effector XopAI from Xanthomonas axonopodis pv. citri
rcsb
molecule keywords Type III effector XopAI
total genus 71
structure length 237
sequence length 237
ec nomenclature
pdb deposition date 2012-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01129 ART NAD:arginine ADP-ribosyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 4elnA00
5DZQA 4GF1A 2C8AA 1OJZA 1QS2A 2J3ZA 4H0XA 1PWQA 4TR5A 3NTSA 5D1SA 1GXYA 2C8BX 1GXZA 2WN4A 1J7NA 1R4BA 1GY0A 1PWWA 1OG3A 1PWUA 4PKRA 2C8DA 2GWLA 4H0VA 2J3VA 2C8FE 1R45A 5D1UA 4PKTA 5H03A 3BW8A 2WN5A 2A78B 4PKWA 2C8CA 4PKQA 2WN8A 4FXQA 4DV8A 4XM6A 5D1TA 4GY2A 1JKYA 4XM7A 1GZFA 5GTTA 4FK7A 1QS1A 5BWMB 4XM8A 1OG1A 1GIQA 3U0JA 2C8GA 1GZEA 1OJQA 4H03A 1UZIA 4XSGB 4ELNA 1G24A 2GWMA 4XSHB 2A9KB 1PWPA 4PKUA 2J3XA 4PKVA 2C8EE 4WF6A 5H04A 1OG4A 4FMLA 2WN7A 2C89A 1YQYA 1PWVA 1GIRA 4PKSA 2WN6A 2BOVB 3BUZA 4H0TA 1ZXVA 4H0YA 2C8HA
chains in the Genus database with same CATH superfamily
5DZQA 4GF1A 2C8AA 1OJZA 1QS2A 2J3ZA 4H0XA 1PWQA 4TR5A 3NTSA 5D1SA 1GXYA 2C8BX 1GXZA 2WN4A 1J7NA 1R4BA 1GY0A 1PWWA 1OG3A 1PWUA 4PKRA 2C8DA 2GWLA 4H0VA 2J3VA 2C8FE 1R45A 5D1UA 4PKTA 5H03A 3BW8A 2WN5A 2A78B 4PKWA 2C8CA 4PKQA 2WN8A 4FXQA 4DV8A 4XM6A 5D1TA 4GY2A 1JKYA 4XM7A 1GZFA 5GTTA 4FK7A 1QS1A 5BWMB 4XM8A 1OG1A 1GIQA 3U0JA 2C8GA 1GZEA 1OJQA 4H03A 1UZIA 4XSGB 4ELNA 1G24A 2GWMA 4XSHB 2A9KB 1PWPA 4PKUA 2J3XA 4PKVA 2C8EE 4WF6A 5H04A 1OG4A 4FMLA 2WN7A 2C89A 1YQYA 1PWVA 1GIRA 4PKSA 2WN6A 2BOVB 3BUZA 4H0TA 1ZXVA 4H0YA 2C8HA
chains in the Genus database with same CATH topology
5DZQA 4GF1A 2C8AA 1OJZA 1QS2A 2J3ZA 4H0XA 1PWQA 4TR5A 3NTSA 5D1SA 1GXYA 2C8BX 1GXZA 2WN4A 1J7NA 1R4BA 1GY0A 1PWWA 1OG3A 1PWUA 4PKRA 2C8DA 2GWLA 4H0VA 2J3VA 2C8FE 1R45A 5D1UA 4PKTA 5H03A 3BW8A 2WN5A 2A78B 4PKWA 2C8CA 4PKQA 2WN8A 4FXQA 4DV8A 4XM6A 5D1TA 4GY2A 1JKYA 4XM7A 1GZFA 5GTTA 4FK7A 1QS1A 5BWMB 4XM8A 1OG1A 1GIQA 3U0JA 2C8GA 1GZEA 1OJQA 4H03A 1UZIA 4XSGB 4ELNA 1G24A 2GWMA 4XSHB 2A9KB 1PWPA 4PKUA 2J3XA 4PKVA 2C8EE 4WF6A 5H04A 1OG4A 4FMLA 2WN7A 2C89A 1YQYA 1PWVA 1GIRA 4PKSA 2WN6A 2BOVB 3BUZA 4H0TA 1ZXVA 4H0YA 2C8HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DZQ A;  4GF1 A;  2C8A A;  1OJZ A;  1QS2 A;  2J3Z A;  4H0X A;  1PWQ A;  4TR5 A;  3NTS A;  5D1S A;  1GXY A;  2C8B X;  1GXZ A;  2WN4 A;  1J7N A;  1R4B A;  1GY0 A;  1PWW A;  1OG3 A;  1PWU A;  4PKR A;  2C8D A;  2GWL A;  4H0V A;  2J3V A;  2C8F E;  1R45 A;  5D1U A;  4PKT A;  5H03 A;  3BW8 A;  2WN5 A;  2A78 B;  4PKW A;  2C8C A;  4PKQ A;  2WN8 A;  4FXQ A;  4DV8 A;  4XM6 A;  5D1T A;  4GY2 A;  1JKY A;  4XM7 A;  1GZF A;  5GTT A;  4FK7 A;  1QS1 A;  5BWM B;  4XM8 A;  1OG1 A;  1GIQ A;  3U0J A;  2C8G A;  1GZE A;  1OJQ A;  4H03 A;  1UZI A;  4XSG B;  4ELN A;  1G24 A;  2GWM A;  4XSH B;  2A9K B;  1PWP A;  4PKU A;  2J3X A;  4PKV A;  2C8E E;  4WF6 A;  5H04 A;  1OG4 A;  4FML A;  2WN7 A;  2C89 A;  1YQY A;  1PWV A;  1GIR A;  4PKS A;  2WN6 A;  2BOV B;  3BUZ A;  4H0T A;  1ZXV A;  4H0Y A;  2C8H A; 
#chains in the Genus database with same CATH topology
 5DZQ A;  4GF1 A;  2C8A A;  1OJZ A;  1QS2 A;  2J3Z A;  4H0X A;  1PWQ A;  4TR5 A;  3NTS A;  5D1S A;  1GXY A;  2C8B X;  1GXZ A;  2WN4 A;  1J7N A;  1R4B A;  1GY0 A;  1PWW A;  1OG3 A;  1PWU A;  4PKR A;  2C8D A;  2GWL A;  4H0V A;  2J3V A;  2C8F E;  1R45 A;  5D1U A;  4PKT A;  5H03 A;  3BW8 A;  2WN5 A;  2A78 B;  4PKW A;  2C8C A;  4PKQ A;  2WN8 A;  4FXQ A;  4DV8 A;  4XM6 A;  5D1T A;  4GY2 A;  1JKY A;  4XM7 A;  1GZF A;  5GTT A;  4FK7 A;  1QS1 A;  5BWM B;  4XM8 A;  1OG1 A;  1GIQ A;  3U0J A;  2C8G A;  1GZE A;  1OJQ A;  4H03 A;  1UZI A;  4XSG B;  4ELN A;  1G24 A;  2GWM A;  4XSH B;  2A9K B;  1PWP A;  4PKU A;  2J3X A;  4PKV A;  2C8E E;  4WF6 A;  5H04 A;  1OG4 A;  4FML A;  2WN7 A;  2C89 A;  1YQY A;  1PWV A;  1GIR A;  4PKS A;  2WN6 A;  2BOV B;  3BUZ A;  4H0T A;  1ZXV A;  4H0Y A;  2C8H A; 
#chains in the Genus database with same CATH homology
 5DZQ A;  4GF1 A;  2C8A A;  1OJZ A;  1QS2 A;  2J3Z A;  4H0X A;  1PWQ A;  4TR5 A;  3NTS A;  5D1S A;  1GXY A;  2C8B X;  1GXZ A;  2WN4 A;  1J7N A;  1R4B A;  1GY0 A;  1PWW A;  1OG3 A;  1PWU A;  4PKR A;  2C8D A;  2GWL A;  4H0V A;  2J3V A;  2C8F E;  1R45 A;  5D1U A;  4PKT A;  5H03 A;  3BW8 A;  2WN5 A;  2A78 B;  4PKW A;  2C8C A;  4PKQ A;  2WN8 A;  4FXQ A;  4DV8 A;  4XM6 A;  5D1T A;  4GY2 A;  1JKY A;  4XM7 A;  1GZF A;  5GTT A;  4FK7 A;  1QS1 A;  5BWM B;  4XM8 A;  1OG1 A;  1GIQ A;  3U0J A;  2C8G A;  1GZE A;  1OJQ A;  4H03 A;  1UZI A;  4XSG B;  4ELN A;  1G24 A;  2GWM A;  4XSH B;  2A9K B;  1PWP A;  4PKU A;  2J3X A;  4PKV A;  2C8E E;  4WF6 A;  5H04 A;  1OG4 A;  4FML A;  2WN7 A;  2C89 A;  1YQY A;  1PWV A;  1GIR A;  4PKS A;  2WN6 A;  2BOV B;  3BUZ A;  4H0T A;  1ZXV A;  4H0Y A;  2C8H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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