2J3VA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 3.0
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
total genus 147
structure length 430
sequence length 430
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA01
1PWWA 4FMLA 3BUZA 5H04A 4XM7A 2WN6A 2C8CA 4H03A 2C89A 1QS2A 4FK7A 1PWPA 5D1SA 4H0XA 1GY0A 2J3ZA 3NTSA 5D1UA 1OG4A 2GWLA 1GZEA 2C8BX 2WN7A 5DZQA 2C8GA 5H03A 1OJQA 1OG3A 1PWUA 1OJZA 4PKWA 4DV8A 4H0TA 2J3VA 3U0JA 5GTTA 2C8HA 2A9KB 2C8DA 4FXQA 4GF1A 1GXYA 2WN8A 2C8EE 4H0YA 1PWVA 4XSGB 1J7NA 4ELNA 2WN4A 1QS1A 4PKVA 2J3XA 1ZXVA 4GY2A 4PKQA 4XM8A 1R4BA 1R45A 4H0VA 4TR5A 1GIQA 2WN5A 2C8AA 2BOVB 2C8FE 4XSHB 5BWMB 2GWMA 4PKSA 1OG1A 1PWQA 4PKRA 5D1TA 1GZFA 1GXZA 1GIRA 1G24A 4PKTA 1YQYA 4PKUA 4XM6A 3BW8A 1JKYA 1UZIA 4WF6A 2A78B
chains in the Genus database with same CATH superfamily
1PWWA 4FMLA 3BUZA 5H04A 4XM7A 2WN6A 2C8CA 4H03A 2C89A 1QS2A 4FK7A 1PWPA 5D1SA 4H0XA 1GY0A 2J3ZA 3NTSA 5D1UA 1OG4A 2GWLA 1GZEA 2C8BX 2WN7A 5DZQA 2C8GA 5H03A 1OJQA 1OG3A 1PWUA 1OJZA 4PKWA 4DV8A 4H0TA 2J3VA 3U0JA 5GTTA 2C8HA 2A9KB 2C8DA 4FXQA 4GF1A 1GXYA 2WN8A 2C8EE 4H0YA 1PWVA 4XSGB 1J7NA 4ELNA 2WN4A 1QS1A 4PKVA 2J3XA 1ZXVA 4GY2A 4PKQA 4XM8A 1R4BA 1R45A 4H0VA 4TR5A 1GIQA 2WN5A 2C8AA 2BOVB 2C8FE 4XSHB 5BWMB 2GWMA 4PKSA 1OG1A 1PWQA 4PKRA 5D1TA 1GZFA 1GXZA 1GIRA 1G24A 4PKTA 1YQYA 4PKUA 4XM6A 3BW8A 1JKYA 1UZIA 4WF6A 2A78B
chains in the Genus database with same CATH topology
1PWWA 4FMLA 3BUZA 5H04A 4XM7A 2WN6A 2C8CA 4H03A 2C89A 1QS2A 4FK7A 1PWPA 5D1SA 4H0XA 1GY0A 2J3ZA 3NTSA 5D1UA 1OG4A 2GWLA 1GZEA 2C8BX 2WN7A 5DZQA 2C8GA 5H03A 1OJQA 1OG3A 1PWUA 1OJZA 4PKWA 4DV8A 4H0TA 2J3VA 3U0JA 5GTTA 2C8HA 2A9KB 2C8DA 4FXQA 4GF1A 1GXYA 2WN8A 2C8EE 4H0YA 1PWVA 4XSGB 1J7NA 4ELNA 2WN4A 1QS1A 4PKVA 2J3XA 1ZXVA 4GY2A 4PKQA 4XM8A 1R4BA 1R45A 4H0VA 4TR5A 1GIQA 2WN5A 2C8AA 2BOVB 2C8FE 4XSHB 5BWMB 2GWMA 4PKSA 1OG1A 1PWQA 4PKRA 5D1TA 1GZFA 1GXZA 1GIRA 1G24A 4PKTA 1YQYA 4PKUA 4XM6A 3BW8A 1JKYA 1UZIA 4WF6A 2A78B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PWW A;  4FML A;  3BUZ A;  5H04 A;  4XM7 A;  2WN6 A;  2C8C A;  4H03 A;  2C89 A;  1QS2 A;  4FK7 A;  1PWP A;  5D1S A;  4H0X A;  1GY0 A;  2J3Z A;  3NTS A;  5D1U A;  1OG4 A;  2GWL A;  1GZE A;  2C8B X;  2WN7 A;  5DZQ A;  2C8G A;  5H03 A;  1OJQ A;  1OG3 A;  1PWU A;  1OJZ A;  4PKW A;  4DV8 A;  4H0T A;  2J3V A;  3U0J A;  5GTT A;  2C8H A;  2A9K B;  2C8D A;  4FXQ A;  4GF1 A;  1GXY A;  2WN8 A;  2C8E E;  4H0Y A;  1PWV A;  4XSG B;  1J7N A;  4ELN A;  2WN4 A;  1QS1 A;  4PKV A;  2J3X A;  1ZXV A;  4GY2 A;  4PKQ A;  4XM8 A;  1R4B A;  1R45 A;  4H0V A;  4TR5 A;  1GIQ A;  2WN5 A;  2C8A A;  2BOV B;  2C8F E;  4XSH B;  5BWM B;  2GWM A;  4PKS A;  1OG1 A;  1PWQ A;  4PKR A;  5D1T A;  1GZF A;  1GXZ A;  1GIR A;  1G24 A;  4PKT A;  1YQY A;  4PKU A;  4XM6 A;  3BW8 A;  1JKY A;  1UZI A;  4WF6 A;  2A78 B; 
#chains in the Genus database with same CATH topology
 1PWW A;  4FML A;  3BUZ A;  5H04 A;  4XM7 A;  2WN6 A;  2C8C A;  4H03 A;  2C89 A;  1QS2 A;  4FK7 A;  1PWP A;  5D1S A;  4H0X A;  1GY0 A;  2J3Z A;  3NTS A;  5D1U A;  1OG4 A;  2GWL A;  1GZE A;  2C8B X;  2WN7 A;  5DZQ A;  2C8G A;  5H03 A;  1OJQ A;  1OG3 A;  1PWU A;  1OJZ A;  4PKW A;  4DV8 A;  4H0T A;  2J3V A;  3U0J A;  5GTT A;  2C8H A;  2A9K B;  2C8D A;  4FXQ A;  4GF1 A;  1GXY A;  2WN8 A;  2C8E E;  4H0Y A;  1PWV A;  4XSG B;  1J7N A;  4ELN A;  2WN4 A;  1QS1 A;  4PKV A;  2J3X A;  1ZXV A;  4GY2 A;  4PKQ A;  4XM8 A;  1R4B A;  1R45 A;  4H0V A;  4TR5 A;  1GIQ A;  2WN5 A;  2C8A A;  2BOV B;  2C8F E;  4XSH B;  5BWM B;  2GWM A;  4PKS A;  1OG1 A;  1PWQ A;  4PKR A;  5D1T A;  1GZF A;  1GXZ A;  1GIR A;  1G24 A;  4PKT A;  1YQY A;  4PKU A;  4XM6 A;  3BW8 A;  1JKY A;  1UZI A;  4WF6 A;  2A78 B; 
#chains in the Genus database with same CATH homology
 1PWW A;  4FML A;  3BUZ A;  5H04 A;  4XM7 A;  2WN6 A;  2C8C A;  4H03 A;  2C89 A;  1QS2 A;  4FK7 A;  1PWP A;  5D1S A;  4H0X A;  1GY0 A;  2J3Z A;  3NTS A;  5D1U A;  1OG4 A;  2GWL A;  1GZE A;  2C8B X;  2WN7 A;  5DZQ A;  2C8G A;  5H03 A;  1OJQ A;  1OG3 A;  1PWU A;  1OJZ A;  4PKW A;  4DV8 A;  4H0T A;  2J3V A;  3U0J A;  5GTT A;  2C8H A;  2A9K B;  2C8D A;  4FXQ A;  4GF1 A;  1GXY A;  2WN8 A;  2C8E E;  4H0Y A;  1PWV A;  4XSG B;  1J7N A;  4ELN A;  2WN4 A;  1QS1 A;  4PKV A;  2J3X A;  1ZXV A;  4GY2 A;  4PKQ A;  4XM8 A;  1R4B A;  1R45 A;  4H0V A;  4TR5 A;  1GIQ A;  2WN5 A;  2C8A A;  2BOV B;  2C8F E;  4XSH B;  5BWM B;  2GWM A;  4PKS A;  1OG1 A;  1PWQ A;  4PKR A;  5D1T A;  1GZF A;  1GXZ A;  1GIR A;  1G24 A;  4PKT A;  1YQY A;  4PKU A;  4XM6 A;  3BW8 A;  1JKY A;  1UZI A;  4WF6 A;  2A78 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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