2J3VA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 3.0
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
molecule tags Toxin
total genus 147
structure length 430
sequence length 430
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA01
4H0VA 1YQYA 3BUZA 4XM7A 4PKVA 3BW8A 5D1TA 4H0YA 2A78B 1JKYA 4PKTA 2C8CA 4PKQA 1GZEA 1OG1A 2J3XA 4GF1A 2BOVB 1R4BA 1R45A 4PKRA 2C8BX 4XM8A 4H0XA 5GTTA 2J3ZA 2C8HA 1QS2A 2C8AA 2GWMA 4DV8A 1OG3A 2C8GA 1GIQA 5DZQA 5BWMB 1GXZA 2WN6A 4WF6A 1GXYA 2C8FE 4XM6A 1PWWA 4FK7A 4H0TA 2C8EE 3NTSA 4PKWA 2C8DA 4PKSA 1GY0A 4FMLA 5H04A 3U0JA 1GZFA 2J3VA 1QS1A 2WN5A 2C89A 1PWPA 1OJQA 1OG4A 1J7NA 1G24A 1ZXVA 2A9KB 2WN8A 5H03A 5D1UA 1UZIA 2WN4A 4FXQA 4PKUA 4GY2A 2GWLA 4ELNA 4TR5A 1PWVA 1OJZA 4XSHB 4H03A 5D1SA 1PWQA 1PWUA 2WN7A 1GIRA 4XSGB
chains in the Genus database with same CATH superfamily
4H0VA 1YQYA 3BUZA 4XM7A 4PKVA 3BW8A 5D1TA 4H0YA 2A78B 1JKYA 4PKTA 2C8CA 4PKQA 1GZEA 1OG1A 2J3XA 4GF1A 2BOVB 1R4BA 1R45A 4PKRA 2C8BX 4XM8A 4H0XA 5GTTA 2J3ZA 2C8HA 1QS2A 2C8AA 2GWMA 4DV8A 1OG3A 2C8GA 1GIQA 5DZQA 5BWMB 1GXZA 2WN6A 4WF6A 1GXYA 2C8FE 4XM6A 1PWWA 4FK7A 4H0TA 2C8EE 3NTSA 4PKWA 2C8DA 4PKSA 1GY0A 4FMLA 5H04A 3U0JA 1GZFA 2J3VA 1QS1A 2WN5A 2C89A 1PWPA 1OJQA 1OG4A 1J7NA 1G24A 1ZXVA 2A9KB 2WN8A 5H03A 5D1UA 1UZIA 2WN4A 4FXQA 4PKUA 4GY2A 2GWLA 4ELNA 4TR5A 1PWVA 1OJZA 4XSHB 4H03A 5D1SA 1PWQA 1PWUA 2WN7A 1GIRA 4XSGB
chains in the Genus database with same CATH topology
4H0VA 1YQYA 3BUZA 4XM7A 4PKVA 3BW8A 5D1TA 4H0YA 2A78B 1JKYA 4PKTA 2C8CA 4PKQA 1GZEA 1OG1A 2J3XA 4GF1A 2BOVB 1R4BA 1R45A 4PKRA 2C8BX 4XM8A 4H0XA 5GTTA 2J3ZA 2C8HA 1QS2A 2C8AA 2GWMA 4DV8A 1OG3A 2C8GA 1GIQA 5DZQA 5BWMB 1GXZA 2WN6A 4WF6A 1GXYA 2C8FE 4XM6A 1PWWA 4FK7A 4H0TA 2C8EE 3NTSA 4PKWA 2C8DA 4PKSA 1GY0A 4FMLA 5H04A 3U0JA 1GZFA 2J3VA 1QS1A 2WN5A 2C89A 1PWPA 1OJQA 1OG4A 1J7NA 1G24A 1ZXVA 2A9KB 2WN8A 5H03A 5D1UA 1UZIA 2WN4A 4FXQA 4PKUA 4GY2A 2GWLA 4ELNA 4TR5A 1PWVA 1OJZA 4XSHB 4H03A 5D1SA 1PWQA 1PWUA 2WN7A 1GIRA 4XSGB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H0V A;  1YQY A;  3BUZ A;  4XM7 A;  4PKV A;  3BW8 A;  5D1T A;  4H0Y A;  2A78 B;  1JKY A;  4PKT A;  2C8C A;  4PKQ A;  1GZE A;  1OG1 A;  2J3X A;  4GF1 A;  2BOV B;  1R4B A;  1R45 A;  4PKR A;  2C8B X;  4XM8 A;  4H0X A;  5GTT A;  2J3Z A;  2C8H A;  1QS2 A;  2C8A A;  2GWM A;  4DV8 A;  1OG3 A;  2C8G A;  1GIQ A;  5DZQ A;  5BWM B;  1GXZ A;  2WN6 A;  4WF6 A;  1GXY A;  2C8F E;  4XM6 A;  1PWW A;  4FK7 A;  4H0T A;  2C8E E;  3NTS A;  4PKW A;  2C8D A;  4PKS A;  1GY0 A;  4FML A;  5H04 A;  3U0J A;  1GZF A;  2J3V A;  1QS1 A;  2WN5 A;  2C89 A;  1PWP A;  1OJQ A;  1OG4 A;  1J7N A;  1G24 A;  1ZXV A;  2A9K B;  2WN8 A;  5H03 A;  5D1U A;  1UZI A;  2WN4 A;  4FXQ A;  4PKU A;  4GY2 A;  2GWL A;  4ELN A;  4TR5 A;  1PWV A;  1OJZ A;  4XSH B;  4H03 A;  5D1S A;  1PWQ A;  1PWU A;  2WN7 A;  1GIR A;  4XSG B; 
#chains in the Genus database with same CATH topology
 4H0V A;  1YQY A;  3BUZ A;  4XM7 A;  4PKV A;  3BW8 A;  5D1T A;  4H0Y A;  2A78 B;  1JKY A;  4PKT A;  2C8C A;  4PKQ A;  1GZE A;  1OG1 A;  2J3X A;  4GF1 A;  2BOV B;  1R4B A;  1R45 A;  4PKR A;  2C8B X;  4XM8 A;  4H0X A;  5GTT A;  2J3Z A;  2C8H A;  1QS2 A;  2C8A A;  2GWM A;  4DV8 A;  1OG3 A;  2C8G A;  1GIQ A;  5DZQ A;  5BWM B;  1GXZ A;  2WN6 A;  4WF6 A;  1GXY A;  2C8F E;  4XM6 A;  1PWW A;  4FK7 A;  4H0T A;  2C8E E;  3NTS A;  4PKW A;  2C8D A;  4PKS A;  1GY0 A;  4FML A;  5H04 A;  3U0J A;  1GZF A;  2J3V A;  1QS1 A;  2WN5 A;  2C89 A;  1PWP A;  1OJQ A;  1OG4 A;  1J7N A;  1G24 A;  1ZXV A;  2A9K B;  2WN8 A;  5H03 A;  5D1U A;  1UZI A;  2WN4 A;  4FXQ A;  4PKU A;  4GY2 A;  2GWL A;  4ELN A;  4TR5 A;  1PWV A;  1OJZ A;  4XSH B;  4H03 A;  5D1S A;  1PWQ A;  1PWU A;  2WN7 A;  1GIR A;  4XSG B; 
#chains in the Genus database with same CATH homology
 4H0V A;  1YQY A;  3BUZ A;  4XM7 A;  4PKV A;  3BW8 A;  5D1T A;  4H0Y A;  2A78 B;  1JKY A;  4PKT A;  2C8C A;  4PKQ A;  1GZE A;  1OG1 A;  2J3X A;  4GF1 A;  2BOV B;  1R4B A;  1R45 A;  4PKR A;  2C8B X;  4XM8 A;  4H0X A;  5GTT A;  2J3Z A;  2C8H A;  1QS2 A;  2C8A A;  2GWM A;  4DV8 A;  1OG3 A;  2C8G A;  1GIQ A;  5DZQ A;  5BWM B;  1GXZ A;  2WN6 A;  4WF6 A;  1GXY A;  2C8F E;  4XM6 A;  1PWW A;  4FK7 A;  4H0T A;  2C8E E;  3NTS A;  4PKW A;  2C8D A;  4PKS A;  1GY0 A;  4FML A;  5H04 A;  3U0J A;  1GZF A;  2J3V A;  1QS1 A;  2WN5 A;  2C89 A;  1PWP A;  1OJQ A;  1OG4 A;  1J7N A;  1G24 A;  1ZXV A;  2A9K B;  2WN8 A;  5H03 A;  5D1U A;  1UZI A;  2WN4 A;  4FXQ A;  4PKU A;  4GY2 A;  2GWL A;  4ELN A;  4TR5 A;  1PWV A;  1OJZ A;  4XSH B;  4H03 A;  5D1S A;  1PWQ A;  1PWU A;  2WN7 A;  1GIR A;  4XSG B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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