2J3VA

Crystal structure of the enzymatic component c2-i of the c2-toxin from clostridium botulinum at ph 3.0
Total Genus 147
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
430
structure length
430
Chain Sequence
PIIKEPIDFINKPESEAKEWGKEEEKRWFTKLNNLEEVAVNQLKNKEYKTKIDNFSTDILFSSLTAIEIMKEDENQNLFDVERIREALLKNTLDRDAIGYVNFTPKELGINFSIRDVELDRDISDETLDKVRQQIINQEYTKFSFISLGLNDNSINESVPVIVKTRVPTTFDYGVLNDKETVSLLLNQGFSIIPESAIITTIKGKDYILIEGSLSQELDFYNKGSEAWGAENYGDYISKLSHEQLGALEGYLHSDYKAINSYLRNNRVPNNDELNKKIELISSALSVKPIPQTLIAYRRVDGIPFDLPSDFSFDKKENGEIIADKQKLNEFIDKWTGKEIENLSFSSTSLKSTPSSFSKSRFIFRLRLSEGAIGAFIYGFSGFQDEQEILLNKNSTFKIFRITPITSIINRVTKMTQVVIDAEGIQNKEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords C2 TOXIN COMPONENT I
publication title Structure and Action of the Binary C2 Toxin from Clostridium Botulinum.
pubmed doi rcsb
source organism Clostridium botulinum
molecule tags Toxin
total genus 147
structure length 430
sequence length 430
ec nomenclature
pdb deposition date 2006-08-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA02
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 2j3vA01
2WN6A 2C8CA 4XM6A 3U0JA 4H0TA 4TR5A 5BWMB 4WF6A 4H0VA 3BW8A 1OJZA 2GWLA 4PKTA 4H03A 4XM7A 2C8GA 1GZEA 1YQYA 5GTTA 2J3ZA 2WN8A 1G24A 1PWPA 1JKYA 5D1TA 2WN5A 4FXQA 2A9KB 2C8EE 1J7NA 1GIQA 4XSHB 4PKSA 1QS1A 5H04A 1OJQA 2J3VA 1PWWA 1OG3A 1PWUA 4H0XA 1PWQA 2C8BX 1GIRA 1UZIA 2C8DA 2C8AA 2A78B 2WN4A 1OG1A 4FMLA 1ZXVA 3NTSA 2C8FE 2C89A 4PKVA 1GXYA 4PKUA 4XSGB 1R45A 4PKWA 5D1UA 1PWVA 4GY2A 4ELNA 5H03A 1GXZA 2WN7A 4FK7A 1GY0A 1OG4A 4H0YA 1QS2A 3BUZA 2GWMA 1R4BA 4XM8A 4DV8A 5D1SA 4GF1A 1GZFA 2BOVB 2C8HA 5DZQA 2J3XA 4PKQA 4PKRA
chains in the Genus database with same CATH superfamily
2WN6A 2C8CA 4XM6A 3U0JA 4H0TA 4TR5A 5BWMB 4WF6A 4H0VA 3BW8A 1OJZA 2GWLA 4PKTA 4H03A 4XM7A 2C8GA 1GZEA 1YQYA 5GTTA 2J3ZA 2WN8A 1G24A 1PWPA 1JKYA 5D1TA 2WN5A 4FXQA 2A9KB 2C8EE 1J7NA 1GIQA 4XSHB 4PKSA 1QS1A 5H04A 1OJQA 2J3VA 1PWWA 1OG3A 1PWUA 4H0XA 1PWQA 2C8BX 1GIRA 1UZIA 2C8DA 2C8AA 2A78B 2WN4A 1OG1A 4FMLA 1ZXVA 3NTSA 2C8FE 2C89A 4PKVA 1GXYA 4PKUA 4XSGB 1R45A 4PKWA 5D1UA 1PWVA 4GY2A 4ELNA 5H03A 1GXZA 2WN7A 4FK7A 1GY0A 1OG4A 4H0YA 1QS2A 3BUZA 2GWMA 1R4BA 4XM8A 4DV8A 5D1SA 4GF1A 1GZFA 2BOVB 2C8HA 5DZQA 2J3XA 4PKQA 4PKRA
chains in the Genus database with same CATH topology
2WN6A 2C8CA 4XM6A 3U0JA 4H0TA 4TR5A 5BWMB 4WF6A 4H0VA 3BW8A 1OJZA 2GWLA 4PKTA 4H03A 4XM7A 2C8GA 1GZEA 1YQYA 5GTTA 2J3ZA 2WN8A 1G24A 1PWPA 1JKYA 5D1TA 2WN5A 4FXQA 2A9KB 2C8EE 1J7NA 1GIQA 4XSHB 4PKSA 1QS1A 5H04A 1OJQA 2J3VA 1PWWA 1OG3A 1PWUA 4H0XA 1PWQA 2C8BX 1GIRA 1UZIA 2C8DA 2C8AA 2A78B 2WN4A 1OG1A 4FMLA 1ZXVA 3NTSA 2C8FE 2C89A 4PKVA 1GXYA 4PKUA 4XSGB 1R45A 4PKWA 5D1UA 1PWVA 4GY2A 4ELNA 5H03A 1GXZA 2WN7A 4FK7A 1GY0A 1OG4A 4H0YA 1QS2A 3BUZA 2GWMA 1R4BA 4XM8A 4DV8A 5D1SA 4GF1A 1GZFA 2BOVB 2C8HA 5DZQA 2J3XA 4PKQA 4PKRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WN6 A;  2C8C A;  4XM6 A;  3U0J A;  4H0T A;  4TR5 A;  5BWM B;  4WF6 A;  4H0V A;  3BW8 A;  1OJZ A;  2GWL A;  4PKT A;  4H03 A;  4XM7 A;  2C8G A;  1GZE A;  1YQY A;  5GTT A;  2J3Z A;  2WN8 A;  1G24 A;  1PWP A;  1JKY A;  5D1T A;  2WN5 A;  4FXQ A;  2A9K B;  2C8E E;  1J7N A;  1GIQ A;  4XSH B;  4PKS A;  1QS1 A;  5H04 A;  1OJQ A;  2J3V A;  1PWW A;  1OG3 A;  1PWU A;  4H0X A;  1PWQ A;  2C8B X;  1GIR A;  1UZI A;  2C8D A;  2C8A A;  2A78 B;  2WN4 A;  1OG1 A;  4FML A;  1ZXV A;  3NTS A;  2C8F E;  2C89 A;  4PKV A;  1GXY A;  4PKU A;  4XSG B;  1R45 A;  4PKW A;  5D1U A;  1PWV A;  4GY2 A;  4ELN A;  5H03 A;  1GXZ A;  2WN7 A;  4FK7 A;  1GY0 A;  1OG4 A;  4H0Y A;  1QS2 A;  3BUZ A;  2GWM A;  1R4B A;  4XM8 A;  4DV8 A;  5D1S A;  4GF1 A;  1GZF A;  2BOV B;  2C8H A;  5DZQ A;  2J3X A;  4PKQ A;  4PKR A; 
#chains in the Genus database with same CATH topology
 2WN6 A;  2C8C A;  4XM6 A;  3U0J A;  4H0T A;  4TR5 A;  5BWM B;  4WF6 A;  4H0V A;  3BW8 A;  1OJZ A;  2GWL A;  4PKT A;  4H03 A;  4XM7 A;  2C8G A;  1GZE A;  1YQY A;  5GTT A;  2J3Z A;  2WN8 A;  1G24 A;  1PWP A;  1JKY A;  5D1T A;  2WN5 A;  4FXQ A;  2A9K B;  2C8E E;  1J7N A;  1GIQ A;  4XSH B;  4PKS A;  1QS1 A;  5H04 A;  1OJQ A;  2J3V A;  1PWW A;  1OG3 A;  1PWU A;  4H0X A;  1PWQ A;  2C8B X;  1GIR A;  1UZI A;  2C8D A;  2C8A A;  2A78 B;  2WN4 A;  1OG1 A;  4FML A;  1ZXV A;  3NTS A;  2C8F E;  2C89 A;  4PKV A;  1GXY A;  4PKU A;  4XSG B;  1R45 A;  4PKW A;  5D1U A;  1PWV A;  4GY2 A;  4ELN A;  5H03 A;  1GXZ A;  2WN7 A;  4FK7 A;  1GY0 A;  1OG4 A;  4H0Y A;  1QS2 A;  3BUZ A;  2GWM A;  1R4B A;  4XM8 A;  4DV8 A;  5D1S A;  4GF1 A;  1GZF A;  2BOV B;  2C8H A;  5DZQ A;  2J3X A;  4PKQ A;  4PKR A; 
#chains in the Genus database with same CATH homology
 2WN6 A;  2C8C A;  4XM6 A;  3U0J A;  4H0T A;  4TR5 A;  5BWM B;  4WF6 A;  4H0V A;  3BW8 A;  1OJZ A;  2GWL A;  4PKT A;  4H03 A;  4XM7 A;  2C8G A;  1GZE A;  1YQY A;  5GTT A;  2J3Z A;  2WN8 A;  1G24 A;  1PWP A;  1JKY A;  5D1T A;  2WN5 A;  4FXQ A;  2A9K B;  2C8E E;  1J7N A;  1GIQ A;  4XSH B;  4PKS A;  1QS1 A;  5H04 A;  1OJQ A;  2J3V A;  1PWW A;  1OG3 A;  1PWU A;  4H0X A;  1PWQ A;  2C8B X;  1GIR A;  1UZI A;  2C8D A;  2C8A A;  2A78 B;  2WN4 A;  1OG1 A;  4FML A;  1ZXV A;  3NTS A;  2C8F E;  2C89 A;  4PKV A;  1GXY A;  4PKU A;  4XSG B;  1R45 A;  4PKW A;  5D1U A;  1PWV A;  4GY2 A;  4ELN A;  5H03 A;  1GXZ A;  2WN7 A;  4FK7 A;  1GY0 A;  1OG4 A;  4H0Y A;  1QS2 A;  3BUZ A;  2GWM A;  1R4B A;  4XM8 A;  4DV8 A;  5D1S A;  4GF1 A;  1GZF A;  2BOV B;  2C8H A;  5DZQ A;  2J3X A;  4PKQ A;  4PKR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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