1VKA | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	131
structure length	131
Chain Sequence	SAVNVYSTSVTSDNLSRHDMLAWINESLQLNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDGKDYDPVAARQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Homo sapiens
publication title	Southeast Collaboratory for Structural Genomics: Hypothetical Human Protein Q15691 N-Terminal Fragment rcsb
molecule keywords	Microtubule-associated protein RP/EB family member 1
total genus	42
structure length	131
sequence length	131
chains with identical sequence	B
ec nomenclature
pdb deposition date	2004-05-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00307	CH	Calponin homology (CH) domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Calponin-like domain	1vkaA00

5BVRA 5A38A 3HOCA 3CO1A 2QJXA 1RT8A 1P5SA 2DK9A 1WIXA 1QAGA 2WA5A 1PXYA 1WYRA 4B7LA 3JALM 1SH5A 4EDNA 2R8UA 1H67A 2VZCA 1BHDA 1WYQA 2D89A 2VZGB 1V5KA 5J8EA 1WYPA 3FERA 4TXIA 2K2RA 1UEGA 2EE7A 1WYMA 2D86A 2R0OA 2QJZA 3REPB 4TXKA 2D88A 1VKAA 3HOPA 4Q59A 1WYOA 2D85A 2EYIA 5L0OA 5A36A 1PA7A 2K3SA 3KY9A 1WKUA 3HORA 3JARM 2RR8A 5A4BA 3KMUB 4Q57B 2D87A 3I6XA 1SH6A 2YRNA 1P2XA 1BKRA 1WYNA 1AA2A 2E9KA 1DXXA 4EDLA 1AOAA 2WA7A 1TJTA 3KMWB 3F7PA 2WA6A 2WFNA 1UJOA 2VZIB 2JV9A 3JAKM 5A37A 4Q58A 2L3GA 1WYLA 4EDMA 1MB8A 1WJOA 2VZDA 2EYNA
chains in the Genus database with same CATH superfamily

5BVRA 5A38A 3HOCA 3CO1A 2QJXA 1RT8A 2HL9A 1P5SA 2DK9A 4LVRA 1WIXA 1QAGA 2WA5A 2IGPA 1PXYA 1WYRA 4B7LA 3JALM 1SH5A 1EUVA 2R8UA 4EDNA 1H67A 2VZCA 1BHDA 1WYQA 2D89A 2VZGB 1V5KA 5J8EA 1WYPA 3FERA 4TXIA 2K2RA 5FMUA 1UEGA 2EE7A 1WYMA 2D86A 2R0OA 4DDPA 2QJZA 3REPB 4TXKA 2D88A 1VKAA 3HOPA 4Q59A 1WYOA 2D85A 2EYIA 2WDTA 5L0OA 5A36A 2WE6A 1PA7A 2EQOA 2K3SA 3KY9A 1WKUA 3HORA 3JARM 3VP7A 2RR8A 3EAYA 5A4BA 3KMUB 4Q57B 2D87A 2HKPA 3I6XA 1SH6A 4LVPA 2YRNA 1P2XA 1BKRA 2VE7A 1WYNA 1AA2A 2E9KA 1DXXA 5FMTA 4EDLA 1AOAA 2WA7A 1TJTA 3KMWB 3F7PA 2WA6A 2WFNA 1UJOA 2VE7C 2VZIB 2JV9A 3JAKM 5A37A 4Q58A 2L3GA 1WYLA 4EDMA 2HL8A 1MB8A 1WJOA 2VZDA 2EYNA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5BVR A;  5A38 A;  3HOC A;  3CO1 A;  2QJX A;  1RT8 A;  1P5S A;  2DK9 A;  1WIX A;  1QAG A;  2WA5 A;  1PXY A;  1WYR A;  4B7L A;  3JAL M;  1SH5 A;  4EDN A;  2R8U A;  1H67 A;  2VZC A;  1BHD A;  1WYQ A;  2D89 A;  2VZG B;  1V5K A;  5J8E A;  1WYP A;  3FER A;  4TXI A;  2K2R A;  1UEG A;  2EE7 A;  1WYM A;  2D86 A;  2R0O A;  2QJZ A;  3REP B;  4TXK A;  2D88 A;  1VKA A;  3HOP A;  4Q59 A;  1WYO A;  2D85 A;  2EYI A;  5L0O A;  5A36 A;  1PA7 A;  2K3S A;  3KY9 A;  1WKU A;  3HOR A;  3JAR M;  2RR8 A;  5A4B A;  3KMU B;  4Q57 B;  2D87 A;  3I6X A;  1SH6 A;  2YRN A;  1P2X A;  1BKR A;  1WYN A;  1AA2 A;  2E9K A;  1DXX A;  4EDL A;  1AOA A;  2WA7 A;  1TJT A;  3KMW B;  3F7P A;  2WA6 A;  2WFN A;  1UJO A;  2VZI B;  2JV9 A;  3JAK M;  5A37 A;  4Q58 A;  2L3G A;  1WYL A;  4EDM A;  1MB8 A;  1WJO A;  2VZD A;  2EYN A; 
#chains in the Genus database with same CATH topology
 5BVR A;  5A38 A;  3HOC A;  3CO1 A;  2QJX A;  1RT8 A;  2HL9 A;  1P5S A;  2DK9 A;  4LVR A;  1WIX A;  1QAG A;  2WA5 A;  2IGP A;  1PXY A;  1WYR A;  4B7L A;  3JAL M;  1SH5 A;  1EUV A;  2R8U A;  4EDN A;  1H67 A;  2VZC A;  1BHD A;  1WYQ A;  2D89 A;  2VZG B;  1V5K A;  5J8E A;  1WYP A;  3FER A;  4TXI A;  2K2R A;  5FMU A;  1UEG A;  2EE7 A;  1WYM A;  2D86 A;  2R0O A;  4DDP A;  2QJZ A;  3REP B;  4TXK A;  2D88 A;  1VKA A;  3HOP A;  4Q59 A;  1WYO A;  2D85 A;  2EYI A;  2WDT A;  5L0O A;  5A36 A;  2WE6 A;  1PA7 A;  2EQO A;  2K3S A;  3KY9 A;  1WKU A;  3HOR A;  3JAR M;  3VP7 A;  2RR8 A;  3EAY A;  5A4B A;  3KMU B;  4Q57 B;  2D87 A;  2HKP A;  3I6X A;  1SH6 A;  4LVP A;  2YRN A;  1P2X A;  1BKR A;  2VE7 A;  1WYN A;  1AA2 A;  2E9K A;  1DXX A;  5FMT A;  4EDL A;  1AOA A;  2WA7 A;  1TJT A;  3KMW B;  3F7P A;  2WA6 A;  2WFN A;  1UJO A;  2VE7 C;  2VZI B;  2JV9 A;  3JAK M;  5A37 A;  4Q58 A;  2L3G A;  1WYL A;  4EDM A;  2HL8 A;  1MB8 A;  1WJO A;  2VZD A;  2EYN A; 
#chains in the Genus database with same CATH homology
 5BVR A;  5A38 A;  3HOC A;  3CO1 A;  2QJX A;  1RT8 A;  1P5S A;  2DK9 A;  1WIX A;  1QAG A;  2WA5 A;  1PXY A;  1WYR A;  4B7L A;  3JAL M;  1SH5 A;  4EDN A;  2R8U A;  1H67 A;  2VZC A;  1BHD A;  1WYQ A;  2D89 A;  2VZG B;  1V5K A;  5J8E A;  1WYP A;  3FER A;  4TXI A;  2K2R A;  1UEG A;  2EE7 A;  1WYM A;  2D86 A;  2R0O A;  2QJZ A;  3REP B;  4TXK A;  2D88 A;  1VKA A;  3HOP A;  4Q59 A;  1WYO A;  2D85 A;  2EYI A;  5L0O A;  5A36 A;  1PA7 A;  2K3S A;  3KY9 A;  1WKU A;  3HOR A;  3JAR M;  2RR8 A;  5A4B A;  3KMU B;  4Q57 B;  2D87 A;  3I6X A;  1SH6 A;  2YRN A;  1P2X A;  1BKR A;  1WYN A;  1AA2 A;  2E9K A;  1DXX A;  4EDL A;  1AOA A;  2WA7 A;  1TJT A;  3KMW B;  3F7P A;  2WA6 A;  2WFN A;  1UJO A;  2VZI B;  2JV9 A;  3JAK M;  5A37 A;  4Q58 A;  2L3G A;  1WYL A;  4EDM A;  1MB8 A;  1WJO A;  2VZD A;  2EYN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1VKAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations