1WIX | Genus

Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	164
structure length	164
Chain Sequence	GSSGSSGLPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Mus musculus
publication title	The solution structure of RSGI RUH-026, conserved domain of HOOK1 protein from mouse rcsb
molecule keywords	Hook homolog 1
total genus	41
structure length	164
sequence length	164
ec nomenclature
pdb deposition date	2004-05-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Calponin-like domain	1wixA01

1WIXA 2K3SA 1SH6A 5L0OA 2EYNA 2QJZA 2K2RA 3FERA 1WYPA 2E9KA 3CO1A 2WA7A 3KMWB 4EDLA 2EYIA 2VZGB 3KY9A 4TXKA 1AOAA 4Q58A 1WYMA 2L3GA 2R8UA 3JALM 2R0OA 2VZCA 1TJTA 1SH5A 2D86A 3I6XA 5BVRA 1BKRA 1RT8A 3HOPA 1WKUA 1WYNA 1WYLA 4Q59A 1VKAA 3JARM 1DXXA 3JAKM 5J8EA 2WFNA 2JV9A 3KMUB 1MB8A 4Q57B 5A4BA 2RR8A 3REPB 1H67A 2D88A 1P2XA 1PXYA 2VZIB 1UEGA 3HOCA 1PA7A 3HORA 2WA5A 2DK9A 2D85A 1WJOA 2D89A 1V5KA 1QAGA 1WYQA 1UJOA 4EDNA 2EE7A 1WYRA 3F7PA 1P5SA 2QJXA 5A38A 4TXIA 1WYOA 5A36A 1AA2A 2D87A 4B7LA 5A37A 2YRNA 4EDMA 2WA6A 2VZDA 1BHDA
chains in the Genus database with same CATH superfamily

1WIXA 2K3SA 1SH6A 5L0OA 2EYNA 2QJZA 2K2RA 3FERA 1WYPA 2E9KA 3CO1A 2WA7A 4EDMA 3KMWB 4EDLA 2EYIA 2VZGB 3KY9A 4TXKA 1AOAA 5FMTA 4Q58A 2WDTA 4DDPA 1WYMA 2HL9A 2L3GA 2R8UA 4LVPA 3JALM 2R0OA 2VZCA 1TJTA 1SH5A 2D86A 3I6XA 5BVRA 1BKRA 1RT8A 3HOPA 1WKUA 1WYNA 1WYLA 4Q59A 1VKAA 3JARM 1DXXA 3JAKM 5J8EA 2WFNA 2IGPA 2EQOA 2JV9A 3KMUB 1MB8A 4Q57B 5A4BA 2RR8A 3REPB 1H67A 2D88A 1P2XA 1PXYA 2VZIB 1UEGA 3HOCA 1PA7A 2HL8A 3HORA 5FMUA 3EAYA 2WA5A 2DK9A 2D85A 1WJOA 2D89A 1V5KA 1QAGA 4LVRA 1WYQA 1UJOA 4EDNA 2EE7A 1WYRA 3F7PA 1P5SA 2QJXA 5A38A 4TXIA 1WYOA 5A36A 1AA2A 2D87A 1EUVA 2HKPA 4B7LA 5A37A 2VE7C 2YRNA 2VE7A 3VP7A 2WE6A 2WA6A 2VZDA 1BHDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WIX A;  2K3S A;  1SH6 A;  5L0O A;  2EYN A;  2QJZ A;  2K2R A;  3FER A;  1WYP A;  2E9K A;  3CO1 A;  2WA7 A;  3KMW B;  4EDL A;  2EYI A;  2VZG B;  3KY9 A;  4TXK A;  1AOA A;  4Q58 A;  1WYM A;  2L3G A;  2R8U A;  3JAL M;  2R0O A;  2VZC A;  1TJT A;  1SH5 A;  2D86 A;  3I6X A;  5BVR A;  1BKR A;  1RT8 A;  3HOP A;  1WKU A;  1WYN A;  1WYL A;  4Q59 A;  1VKA A;  3JAR M;  1DXX A;  3JAK M;  5J8E A;  2WFN A;  2JV9 A;  3KMU B;  1MB8 A;  4Q57 B;  5A4B A;  2RR8 A;  3REP B;  1H67 A;  2D88 A;  1P2X A;  1PXY A;  2VZI B;  1UEG A;  3HOC A;  1PA7 A;  3HOR A;  2WA5 A;  2DK9 A;  2D85 A;  1WJO A;  2D89 A;  1V5K A;  1QAG A;  1WYQ A;  1UJO A;  4EDN A;  2EE7 A;  1WYR A;  3F7P A;  1P5S A;  2QJX A;  5A38 A;  4TXI A;  1WYO A;  5A36 A;  1AA2 A;  2D87 A;  4B7L A;  5A37 A;  2YRN A;  4EDM A;  2WA6 A;  2VZD A;  1BHD A; 
#chains in the Genus database with same CATH topology
 1WIX A;  2K3S A;  1SH6 A;  5L0O A;  2EYN A;  2QJZ A;  2K2R A;  3FER A;  1WYP A;  2E9K A;  3CO1 A;  2WA7 A;  4EDM A;  3KMW B;  4EDL A;  2EYI A;  2VZG B;  3KY9 A;  4TXK A;  1AOA A;  5FMT A;  4Q58 A;  2WDT A;  4DDP A;  1WYM A;  2HL9 A;  2L3G A;  2R8U A;  4LVP A;  3JAL M;  2R0O A;  2VZC A;  1TJT A;  1SH5 A;  2D86 A;  3I6X A;  5BVR A;  1BKR A;  1RT8 A;  3HOP A;  1WKU A;  1WYN A;  1WYL A;  4Q59 A;  1VKA A;  3JAR M;  1DXX A;  3JAK M;  5J8E A;  2WFN A;  2IGP A;  2EQO A;  2JV9 A;  3KMU B;  1MB8 A;  4Q57 B;  5A4B A;  2RR8 A;  3REP B;  1H67 A;  2D88 A;  1P2X A;  1PXY A;  2VZI B;  1UEG A;  3HOC A;  1PA7 A;  2HL8 A;  3HOR A;  5FMU A;  3EAY A;  2WA5 A;  2DK9 A;  2D85 A;  1WJO A;  2D89 A;  1V5K A;  1QAG A;  4LVR A;  1WYQ A;  1UJO A;  4EDN A;  2EE7 A;  1WYR A;  3F7P A;  1P5S A;  2QJX A;  5A38 A;  4TXI A;  1WYO A;  5A36 A;  1AA2 A;  2D87 A;  1EUV A;  2HKP A;  4B7L A;  5A37 A;  2VE7 C;  2YRN A;  2VE7 A;  3VP7 A;  2WE6 A;  2WA6 A;  2VZD A;  1BHD A; 
#chains in the Genus database with same CATH homology
 1WIX A;  2K3S A;  1SH6 A;  5L0O A;  2EYN A;  2QJZ A;  2K2R A;  3FER A;  1WYP A;  2E9K A;  3CO1 A;  2WA7 A;  3KMW B;  4EDL A;  2EYI A;  2VZG B;  3KY9 A;  4TXK A;  1AOA A;  4Q58 A;  1WYM A;  2L3G A;  2R8U A;  3JAL M;  2R0O A;  2VZC A;  1TJT A;  1SH5 A;  2D86 A;  3I6X A;  5BVR A;  1BKR A;  1RT8 A;  3HOP A;  1WKU A;  1WYN A;  1WYL A;  4Q59 A;  1VKA A;  3JAR M;  1DXX A;  3JAK M;  5J8E A;  2WFN A;  2JV9 A;  3KMU B;  1MB8 A;  4Q57 B;  5A4B A;  2RR8 A;  3REP B;  1H67 A;  2D88 A;  1P2X A;  1PXY A;  2VZI B;  1UEG A;  3HOC A;  1PA7 A;  3HOR A;  2WA5 A;  2DK9 A;  2D85 A;  1WJO A;  2D89 A;  1V5K A;  1QAG A;  1WYQ A;  1UJO A;  4EDN A;  2EE7 A;  1WYR A;  3F7P A;  1P5S A;  2QJX A;  5A38 A;  4TXI A;  1WYO A;  5A36 A;  1AA2 A;  2D87 A;  4B7L A;  5A37 A;  2YRN A;  4EDM A;  2WA6 A;  2VZD A;  1BHD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1WIXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

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