1WJOA

Solution structure of the forth ch domain from human plastin 3 t-isoform
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
124
structure length
124
Chain Sequence
GSSGSSGNDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGRGMKRVSGPSSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the forth CH domain from human plastin 3 T-isoform
rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords T-plastin
total genus 19
structure length 124
sequence length 124
ec nomenclature
pdb deposition date 2004-05-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wjoA01
1WJOA 2RR8A 3F7PA 2VZIB 2QJXA 1TJTA 3JARM 2VZGB 1BKRA 3CO1A 4TXKA 4EDNA 2JV9A 1QAGA 1AA2A 1WYRA 2EE7A 1WYLA 2L3GA 2K2RA 2R8UA 2YRNA 1WYPA 2D88A 2EYIA 1VKAA 2WA6A 4Q59A 1WYOA 4B7LA 1DXXA 1WYNA 2R0OA 2D89A 4EDLA 1BHDA 3FERA 3HORA 1H67A 3JAKM 1SH6A 1V5KA 1UJOA 3HOPA 2DK9A 5BVRA 2D85A 2VZCA 1PXYA 2D87A 2WA7A 2VZDA 1PA7A 4Q57B 2E9KA 3JALM 3KMWB 1AOAA 1P2XA 1WIXA 1WYMA 2EYNA 1P5SA 3I6XA 3KY9A 3HOCA 3REPB 2D86A 2WA5A 1WYQA 1MB8A 5L0OA 4Q58A 4EDMA 5A36A 1SH5A 5A38A 2QJZA 1UEGA 1WKUA 2K3SA 1RT8A 3KMUB 5J8EA 2WFNA 5A4BA 5A37A 4TXIA
chains in the Genus database with same CATH superfamily
1WJOA 2RR8A 3F7PA 2VZIB 2QJXA 1TJTA 3JARM 2VZGB 1BKRA 3CO1A 4TXKA 4EDNA 2JV9A 1EUVA 1QAGA 2HKPA 1AA2A 1WYRA 2EE7A 1WYLA 2L3GA 2K2RA 3EAYA 2R8UA 2YRNA 1WYPA 2D88A 2EYIA 4DDPA 1VKAA 2HL8A 2WA6A 4Q59A 1WYOA 4B7LA 1DXXA 2HL9A 1WYNA 2R0OA 2D89A 4EDLA 1BHDA 3FERA 3HORA 3VP7A 1H67A 3JAKM 1SH6A 1V5KA 4LVPA 1UJOA 3HOPA 2DK9A 5BVRA 2D85A 2VZCA 1PXYA 5FMUA 2D87A 2VE7A 2WA7A 2VZDA 1PA7A 5FMTA 4Q57B 2E9KA 3JALM 2WE6A 3KMWB 1AOAA 1P2XA 1WIXA 4LVRA 1WYMA 2EYNA 3I6XA 1P5SA 3KY9A 3HOCA 3REPB 2D86A 2WA5A 1WYQA 1MB8A 2WDTA 5L0OA 4Q58A 4EDMA 5A36A 1SH5A 2EQOA 5A38A 2QJZA 1UEGA 2IGPA 1WKUA 2K3SA 2VE7C 1RT8A 3KMUB 5J8EA 2WFNA 5A4BA 5A37A 4TXIA
chains in the Genus database with same CATH topology
1WJOA 2RR8A 3F7PA 2VZIB 2QJXA 1TJTA 3JARM 2VZGB 1BKRA 3CO1A 4TXKA 4EDNA 2JV9A 1QAGA 1AA2A 1WYRA 2EE7A 1WYLA 2L3GA 2K2RA 2R8UA 2YRNA 1WYPA 2D88A 2EYIA 1VKAA 2WA6A 4Q59A 1WYOA 4B7LA 1DXXA 1WYNA 2R0OA 2D89A 4EDLA 1BHDA 3FERA 3HORA 1H67A 3JAKM 1SH6A 1V5KA 1UJOA 3HOPA 2DK9A 5BVRA 2D85A 2VZCA 1PXYA 2D87A 2WA7A 2VZDA 1PA7A 4Q57B 2E9KA 3JALM 3KMWB 1AOAA 1P2XA 1WIXA 1WYMA 2EYNA 1P5SA 3I6XA 3KY9A 3HOCA 3REPB 2D86A 2WA5A 1WYQA 1MB8A 5L0OA 4Q58A 4EDMA 5A36A 1SH5A 5A38A 2QJZA 1UEGA 1WKUA 2K3SA 1RT8A 3KMUB 5J8EA 2WFNA 5A4BA 5A37A 4TXIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WJO A;  2RR8 A;  3F7P A;  2VZI B;  2QJX A;  1TJT A;  3JAR M;  2VZG B;  1BKR A;  3CO1 A;  4TXK A;  4EDN A;  2JV9 A;  1QAG A;  1AA2 A;  1WYR A;  2EE7 A;  1WYL A;  2L3G A;  2K2R A;  2R8U A;  2YRN A;  1WYP A;  2D88 A;  2EYI A;  1VKA A;  2WA6 A;  4Q59 A;  1WYO A;  4B7L A;  1DXX A;  1WYN A;  2R0O A;  2D89 A;  4EDL A;  1BHD A;  3FER A;  3HOR A;  1H67 A;  3JAK M;  1SH6 A;  1V5K A;  1UJO A;  3HOP A;  2DK9 A;  5BVR A;  2D85 A;  2VZC A;  1PXY A;  2D87 A;  2WA7 A;  2VZD A;  1PA7 A;  4Q57 B;  2E9K A;  3JAL M;  3KMW B;  1AOA A;  1P2X A;  1WIX A;  1WYM A;  2EYN A;  1P5S A;  3I6X A;  3KY9 A;  3HOC A;  3REP B;  2D86 A;  2WA5 A;  1WYQ A;  1MB8 A;  5L0O A;  4Q58 A;  4EDM A;  5A36 A;  1SH5 A;  5A38 A;  2QJZ A;  1UEG A;  1WKU A;  2K3S A;  1RT8 A;  3KMU B;  5J8E A;  2WFN A;  5A4B A;  5A37 A;  4TXI A; 
#chains in the Genus database with same CATH topology
 1WJO A;  2RR8 A;  3F7P A;  2VZI B;  2QJX A;  1TJT A;  3JAR M;  2VZG B;  1BKR A;  3CO1 A;  4TXK A;  4EDN A;  2JV9 A;  1EUV A;  1QAG A;  2HKP A;  1AA2 A;  1WYR A;  2EE7 A;  1WYL A;  2L3G A;  2K2R A;  3EAY A;  2R8U A;  2YRN A;  1WYP A;  2D88 A;  2EYI A;  4DDP A;  1VKA A;  2HL8 A;  2WA6 A;  4Q59 A;  1WYO A;  4B7L A;  1DXX A;  2HL9 A;  1WYN A;  2R0O A;  2D89 A;  4EDL A;  1BHD A;  3FER A;  3HOR A;  3VP7 A;  1H67 A;  3JAK M;  1SH6 A;  1V5K A;  4LVP A;  1UJO A;  3HOP A;  2DK9 A;  5BVR A;  2D85 A;  2VZC A;  1PXY A;  5FMU A;  2D87 A;  2VE7 A;  2WA7 A;  2VZD A;  1PA7 A;  5FMT A;  4Q57 B;  2E9K A;  3JAL M;  2WE6 A;  3KMW B;  1AOA A;  1P2X A;  1WIX A;  4LVR A;  1WYM A;  2EYN A;  3I6X A;  1P5S A;  3KY9 A;  3HOC A;  3REP B;  2D86 A;  2WA5 A;  1WYQ A;  1MB8 A;  2WDT A;  5L0O A;  4Q58 A;  4EDM A;  5A36 A;  1SH5 A;  2EQO A;  5A38 A;  2QJZ A;  1UEG A;  2IGP A;  1WKU A;  2K3S A;  2VE7 C;  1RT8 A;  3KMU B;  5J8E A;  2WFN A;  5A4B A;  5A37 A;  4TXI A; 
#chains in the Genus database with same CATH homology
 1WJO A;  2RR8 A;  3F7P A;  2VZI B;  2QJX A;  1TJT A;  3JAR M;  2VZG B;  1BKR A;  3CO1 A;  4TXK A;  4EDN A;  2JV9 A;  1QAG A;  1AA2 A;  1WYR A;  2EE7 A;  1WYL A;  2L3G A;  2K2R A;  2R8U A;  2YRN A;  1WYP A;  2D88 A;  2EYI A;  1VKA A;  2WA6 A;  4Q59 A;  1WYO A;  4B7L A;  1DXX A;  1WYN A;  2R0O A;  2D89 A;  4EDL A;  1BHD A;  3FER A;  3HOR A;  1H67 A;  3JAK M;  1SH6 A;  1V5K A;  1UJO A;  3HOP A;  2DK9 A;  5BVR A;  2D85 A;  2VZC A;  1PXY A;  2D87 A;  2WA7 A;  2VZD A;  1PA7 A;  4Q57 B;  2E9K A;  3JAL M;  3KMW B;  1AOA A;  1P2X A;  1WIX A;  1WYM A;  2EYN A;  1P5S A;  3I6X A;  3KY9 A;  3HOC A;  3REP B;  2D86 A;  2WA5 A;  1WYQ A;  1MB8 A;  5L0O A;  4Q58 A;  4EDM A;  5A36 A;  1SH5 A;  5A38 A;  2QJZ A;  1UEG A;  1WKU A;  2K3S A;  1RT8 A;  3KMU B;  5J8E A;  2WFN A;  5A4B A;  5A37 A;  4TXI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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