1WKUA

High resolution structure of the human alpha-actinin isoform 3
Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
225
structure length
225
Chain Sequence
AWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI7 (187-190)AH1 (42-59)TI3 (73-76)3H1 (60-62)TIV1 (66-69)TIV2 (69-72)TIV3 (70-73)TI1 (68-71)TI2 (71-74)AH2 (77-87)AH3 (100-116)AH8 (215-230)AH4 (126-131)AH5 (134-150)AH7 (191-200)TI6 (175-178)TI4 (150-153)S1 (154-155)S2 (158-159)TIV6 (154-157)AH6 (160-172)TI5 (172-175)TIV7 (182-185)3H2 (185-187)TI10 (211-214)TIV4 (116-119)TIV5 (121-124)TI8 (201-204)3H3 (207-209)Updating...
connected with : NaN
molecule tags Contractile protein
source organism Homo sapiens
publication title The crystal structure of the actin binding domain from alpha-actinin in its closed conformation: structural insight into phospholipid regulation of alpha-actinin
pubmed doi rcsb
molecule keywords Alpha-actinin 3
total genus 83
structure length 225
sequence length 225
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-06-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00307 CH Calponin homology (CH) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wkuA02
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wkuA01
1SH6A 1UEGA 2L3GA 2QJXA 2WA5A 1DXXA 4TXKA 2QJZA 3CO1A 5A37A 2E9KA 1P5SA 1P2XA 2EYNA 1WYMA 1BHDA 5A4BA 3I6XA 1TJTA 3HOCA 3JARM 3HOPA 2JV9A 1H67A 2VZDA 1UJOA 2D89A 2EE7A 2VZGB 5L0OA 5A36A 1WIXA 2DK9A 1QAGA 5A38A 2WFNA 4EDLA 3KY9A 2RR8A 1MB8A 1RT8A 3JAKM 3REPB 1WYNA 4Q58A 4EDNA 3JALM 3FERA 1VKAA 2WA7A 1WYQA 4EDMA 3KMWB 1WKUA 2VZCA 1PXYA 2EYIA 2VZIB 2K2RA 5BVRA 1AA2A 1WYRA 4B7LA 2WA6A 2K3SA 4Q57B 1BKRA 2D88A 1SH5A 1WJOA 2D85A 3KMUB 1AOAA 2D87A 2D86A 5J8EA 3F7PA 1WYOA 1WYPA 2R0OA 4TXIA 2R8UA 4Q59A 1PA7A 3HORA 1V5KA 1WYLA 2YRNA
chains in the Genus database with same CATH superfamily
1SH6A 1UEGA 2L3GA 2QJXA 2WA5A 1DXXA 5FMTA 4TXKA 2QJZA 3CO1A 5A37A 2E9KA 1P5SA 1P2XA 2EYNA 1WYMA 1BHDA 5A4BA 3I6XA 1TJTA 3HOCA 2EQOA 3JARM 3HOPA 2JV9A 1H67A 2VZDA 1UJOA 2D89A 2EE7A 2VZGB 5L0OA 2WE6A 5A36A 1WIXA 2DK9A 2WDTA 1QAGA 5A38A 2WFNA 4EDLA 3KY9A 2RR8A 1MB8A 1RT8A 3JAKM 3REPB 1WYNA 4Q58A 4EDNA 3JALM 3FERA 4LVRA 1VKAA 2WA7A 1WYQA 4EDMA 3VP7A 3KMWB 2IGPA 2VE7A 1WKUA 2VZCA 1PXYA 2EYIA 2HL9A 2VZIB 2K2RA 3EAYA 5BVRA 1AA2A 1WYRA 4B7LA 4DDPA 2HL8A 5FMUA 2WA6A 2K3SA 4Q57B 1BKRA 2D88A 1SH5A 1WJOA 2HKPA 2D85A 3KMUB 1AOAA 2D87A 2VE7C 4LVPA 1EUVA 2D86A 5J8EA 3F7PA 1WYOA 1WYPA 2R0OA 4TXIA 2R8UA 4Q59A 1PA7A 3HORA 1V5KA 1WYLA 2YRNA
chains in the Genus database with same CATH topology
1SH6A 1UEGA 2L3GA 2QJXA 2WA5A 1DXXA 4TXKA 2QJZA 3CO1A 5A37A 2E9KA 1P5SA 1P2XA 2EYNA 1WYMA 1BHDA 5A4BA 3I6XA 1TJTA 3HOCA 3JARM 3HOPA 2JV9A 1H67A 2VZDA 1UJOA 2D89A 2EE7A 2VZGB 5L0OA 5A36A 1WIXA 2DK9A 1QAGA 5A38A 2WFNA 4EDLA 3KY9A 2RR8A 1MB8A 1RT8A 3JAKM 3REPB 1WYNA 4Q58A 4EDNA 3JALM 3FERA 1VKAA 2WA7A 1WYQA 4EDMA 3KMWB 1WKUA 2VZCA 1PXYA 2EYIA 2VZIB 2K2RA 5BVRA 1AA2A 1WYRA 4B7LA 2WA6A 2K3SA 4Q57B 1BKRA 2D88A 1SH5A 1WJOA 2D85A 3KMUB 1AOAA 2D87A 2D86A 5J8EA 3F7PA 1WYOA 1WYPA 2R0OA 4TXIA 2R8UA 4Q59A 1PA7A 3HORA 1V5KA 1WYLA 2YRNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SH6 A;  1UEG A;  2L3G A;  2QJX A;  2WA5 A;  1DXX A;  4TXK A;  2QJZ A;  3CO1 A;  5A37 A;  2E9K A;  1P5S A;  1P2X A;  2EYN A;  1WYM A;  1BHD A;  5A4B A;  3I6X A;  1TJT A;  3HOC A;  3JAR M;  3HOP A;  2JV9 A;  1H67 A;  2VZD A;  1UJO A;  2D89 A;  2EE7 A;  2VZG B;  5L0O A;  5A36 A;  1WIX A;  2DK9 A;  1QAG A;  5A38 A;  2WFN A;  4EDL A;  3KY9 A;  2RR8 A;  1MB8 A;  1RT8 A;  3JAK M;  3REP B;  1WYN A;  4Q58 A;  4EDN A;  3JAL M;  3FER A;  1VKA A;  2WA7 A;  1WYQ A;  4EDM A;  3KMW B;  1WKU A;  2VZC A;  1PXY A;  2EYI A;  2VZI B;  2K2R A;  5BVR A;  1AA2 A;  1WYR A;  4B7L A;  2WA6 A;  2K3S A;  4Q57 B;  1BKR A;  2D88 A;  1SH5 A;  1WJO A;  2D85 A;  3KMU B;  1AOA A;  2D87 A;  2D86 A;  5J8E A;  3F7P A;  1WYO A;  1WYP A;  2R0O A;  4TXI A;  2R8U A;  4Q59 A;  1PA7 A;  3HOR A;  1V5K A;  1WYL A;  2YRN A; 
#chains in the Genus database with same CATH topology
 1SH6 A;  1UEG A;  2L3G A;  2QJX A;  2WA5 A;  1DXX A;  5FMT A;  4TXK A;  2QJZ A;  3CO1 A;  5A37 A;  2E9K A;  1P5S A;  1P2X A;  2EYN A;  1WYM A;  1BHD A;  5A4B A;  3I6X A;  1TJT A;  3HOC A;  2EQO A;  3JAR M;  3HOP A;  2JV9 A;  1H67 A;  2VZD A;  1UJO A;  2D89 A;  2EE7 A;  2VZG B;  5L0O A;  2WE6 A;  5A36 A;  1WIX A;  2DK9 A;  2WDT A;  1QAG A;  5A38 A;  2WFN A;  4EDL A;  3KY9 A;  2RR8 A;  1MB8 A;  1RT8 A;  3JAK M;  3REP B;  1WYN A;  4Q58 A;  4EDN A;  3JAL M;  3FER A;  4LVR A;  1VKA A;  2WA7 A;  1WYQ A;  4EDM A;  3VP7 A;  3KMW B;  2IGP A;  2VE7 A;  1WKU A;  2VZC A;  1PXY A;  2EYI A;  2HL9 A;  2VZI B;  2K2R A;  3EAY A;  5BVR A;  1AA2 A;  1WYR A;  4B7L A;  4DDP A;  2HL8 A;  5FMU A;  2WA6 A;  2K3S A;  4Q57 B;  1BKR A;  2D88 A;  1SH5 A;  1WJO A;  2HKP A;  2D85 A;  3KMU B;  1AOA A;  2D87 A;  2VE7 C;  4LVP A;  1EUV A;  2D86 A;  5J8E A;  3F7P A;  1WYO A;  1WYP A;  2R0O A;  4TXI A;  2R8U A;  4Q59 A;  1PA7 A;  3HOR A;  1V5K A;  1WYL A;  2YRN A; 
#chains in the Genus database with same CATH homology
 1SH6 A;  1UEG A;  2L3G A;  2QJX A;  2WA5 A;  1DXX A;  4TXK A;  2QJZ A;  3CO1 A;  5A37 A;  2E9K A;  1P5S A;  1P2X A;  2EYN A;  1WYM A;  1BHD A;  5A4B A;  3I6X A;  1TJT A;  3HOC A;  3JAR M;  3HOP A;  2JV9 A;  1H67 A;  2VZD A;  1UJO A;  2D89 A;  2EE7 A;  2VZG B;  5L0O A;  5A36 A;  1WIX A;  2DK9 A;  1QAG A;  5A38 A;  2WFN A;  4EDL A;  3KY9 A;  2RR8 A;  1MB8 A;  1RT8 A;  3JAK M;  3REP B;  1WYN A;  4Q58 A;  4EDN A;  3JAL M;  3FER A;  1VKA A;  2WA7 A;  1WYQ A;  4EDM A;  3KMW B;  1WKU A;  2VZC A;  1PXY A;  2EYI A;  2VZI B;  2K2R A;  5BVR A;  1AA2 A;  1WYR A;  4B7L A;  2WA6 A;  2K3S A;  4Q57 B;  1BKR A;  2D88 A;  1SH5 A;  1WJO A;  2D85 A;  3KMU B;  1AOA A;  2D87 A;  2D86 A;  5J8E A;  3F7P A;  1WYO A;  1WYP A;  2R0O A;  4TXI A;  2R8U A;  4Q59 A;  1PA7 A;  3HOR A;  1V5K A;  1WYL A;  2YRN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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