1WYM | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	155
structure length	155
Chain Sequence	GSSGSSGQKIEKQYDADLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDDGLFSGDPNWFPKKSKESGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 155 atoms

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155 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Homo sapiens
publication title	Solution structure of the CH domain of human transgelin-2 rcsb
molecule keywords	Transgelin-2
total genus	28
structure length	155
sequence length	155
ec nomenclature
pdb deposition date	2005-02-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00307	CH	Calponin homology (CH) domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.418.10	Mainly Alpha	Orthogonal Bundle	Actin-binding Protein, T-fimbrin; domain 1	Calponin-like domain	1wymA01

1P2XA 2E9KA 2EE7A 3KMUB 1UEGA 1AOAA 2K2RA 2WFNA 1WKUA 2JV9A 5A38A 1WYQA 2K3SA 1WYLA 3F7PA 4B7LA 4Q57B 5L0OA 3CO1A 2D85A 1V5KA 2EYNA 2R0OA 1WYNA 1WYPA 5A37A 3KMWB 2VZGB 2D89A 2D87A 2D86A 2WA7A 1WJOA 1P5SA 2WA6A 4Q58A 2D88A 4TXKA 3REPB 2VZCA 3JAKM 4EDNA 3HORA 2EYIA 2RR8A 2WA5A 1UJOA 1WYMA 3FERA 1PA7A 1WYRA 1SH5A 1SH6A 4EDLA 3KY9A 5BVRA 4Q59A 1WYOA 1RT8A 1MB8A 3I6XA 2L3GA 2VZDA 1VKAA 2YRNA 2DK9A 3JALM 2QJXA 3JARM 5J8EA 2QJZA 1DXXA 1H67A 5A36A 3HOPA 1PXYA 1BHDA 3HOCA 1BKRA 4TXIA 1TJTA 2R8UA 5A4BA 1WIXA 2VZIB 1QAGA 4EDMA 1AA2A
chains in the Genus database with same CATH superfamily

1P2XA 2E9KA 2EE7A 3KMUB 1UEGA 1AOAA 2K2RA 2WFNA 1WKUA 2JV9A 5A38A 1WYQA 2K3SA 1WYLA 3F7PA 4B7LA 3VP7A 4Q57B 5L0OA 3CO1A 2D85A 1V5KA 2EYNA 2R0OA 5FMUA 4LVRA 1WYNA 1WYPA 2VE7C 5A37A 3KMWB 2VZGB 2D89A 2D87A 3EAYA 2D86A 2WA7A 1WJOA 1P5SA 4LVPA 2WA6A 4Q58A 2D88A 4TXKA 2IGPA 3REPB 2VZCA 3JAKM 4EDNA 3HORA 2EYIA 2HL9A 2RR8A 2WA5A 1UJOA 1WYMA 3FERA 1PA7A 1WYRA 1SH5A 1SH6A 4DDPA 5FMTA 2VE7A 1EUVA 4EDLA 3KY9A 5BVRA 4Q59A 1WYOA 1RT8A 1MB8A 2WDTA 3I6XA 2L3GA 2VZDA 1VKAA 2YRNA 2DK9A 2WE6A 3JALM 2QJXA 3JARM 5J8EA 2QJZA 1DXXA 1H67A 5A36A 3HOPA 1PXYA 1BHDA 3HOCA 1BKRA 2EQOA 4TXIA 2HL8A 1TJTA 2R8UA 5A4BA 1WIXA 2VZIB 1QAGA 4EDMA 1AA2A 2HKPA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1P2X A;  2E9K A;  2EE7 A;  3KMU B;  1UEG A;  1AOA A;  2K2R A;  2WFN A;  1WKU A;  2JV9 A;  5A38 A;  1WYQ A;  2K3S A;  1WYL A;  3F7P A;  4B7L A;  4Q57 B;  5L0O A;  3CO1 A;  2D85 A;  1V5K A;  2EYN A;  2R0O A;  1WYN A;  1WYP A;  5A37 A;  3KMW B;  2VZG B;  2D89 A;  2D87 A;  2D86 A;  2WA7 A;  1WJO A;  1P5S A;  2WA6 A;  4Q58 A;  2D88 A;  4TXK A;  3REP B;  2VZC A;  3JAK M;  4EDN A;  3HOR A;  2EYI A;  2RR8 A;  2WA5 A;  1UJO A;  1WYM A;  3FER A;  1PA7 A;  1WYR A;  1SH5 A;  1SH6 A;  4EDL A;  3KY9 A;  5BVR A;  4Q59 A;  1WYO A;  1RT8 A;  1MB8 A;  3I6X A;  2L3G A;  2VZD A;  1VKA A;  2YRN A;  2DK9 A;  3JAL M;  2QJX A;  3JAR M;  5J8E A;  2QJZ A;  1DXX A;  1H67 A;  5A36 A;  3HOP A;  1PXY A;  1BHD A;  3HOC A;  1BKR A;  4TXI A;  1TJT A;  2R8U A;  5A4B A;  1WIX A;  2VZI B;  1QAG A;  4EDM A;  1AA2 A; 
#chains in the Genus database with same CATH topology
 1P2X A;  2E9K A;  2EE7 A;  3KMU B;  1UEG A;  1AOA A;  2K2R A;  2WFN A;  1WKU A;  2JV9 A;  5A38 A;  1WYQ A;  2K3S A;  1WYL A;  3F7P A;  4B7L A;  3VP7 A;  4Q57 B;  5L0O A;  3CO1 A;  2D85 A;  1V5K A;  2EYN A;  2R0O A;  5FMU A;  4LVR A;  1WYN A;  1WYP A;  2VE7 C;  5A37 A;  3KMW B;  2VZG B;  2D89 A;  2D87 A;  3EAY A;  2D86 A;  2WA7 A;  1WJO A;  1P5S A;  4LVP A;  2WA6 A;  4Q58 A;  2D88 A;  4TXK A;  2IGP A;  3REP B;  2VZC A;  3JAK M;  4EDN A;  3HOR A;  2EYI A;  2HL9 A;  2RR8 A;  2WA5 A;  1UJO A;  1WYM A;  3FER A;  1PA7 A;  1WYR A;  1SH5 A;  1SH6 A;  4DDP A;  5FMT A;  2VE7 A;  1EUV A;  4EDL A;  3KY9 A;  5BVR A;  4Q59 A;  1WYO A;  1RT8 A;  1MB8 A;  2WDT A;  3I6X A;  2L3G A;  2VZD A;  1VKA A;  2YRN A;  2DK9 A;  2WE6 A;  3JAL M;  2QJX A;  3JAR M;  5J8E A;  2QJZ A;  1DXX A;  1H67 A;  5A36 A;  3HOP A;  1PXY A;  1BHD A;  3HOC A;  1BKR A;  2EQO A;  4TXI A;  2HL8 A;  1TJT A;  2R8U A;  5A4B A;  1WIX A;  2VZI B;  1QAG A;  4EDM A;  1AA2 A;  2HKP A; 
#chains in the Genus database with same CATH homology
 1P2X A;  2E9K A;  2EE7 A;  3KMU B;  1UEG A;  1AOA A;  2K2R A;  2WFN A;  1WKU A;  2JV9 A;  5A38 A;  1WYQ A;  2K3S A;  1WYL A;  3F7P A;  4B7L A;  4Q57 B;  5L0O A;  3CO1 A;  2D85 A;  1V5K A;  2EYN A;  2R0O A;  1WYN A;  1WYP A;  5A37 A;  3KMW B;  2VZG B;  2D89 A;  2D87 A;  2D86 A;  2WA7 A;  1WJO A;  1P5S A;  2WA6 A;  4Q58 A;  2D88 A;  4TXK A;  3REP B;  2VZC A;  3JAK M;  4EDN A;  3HOR A;  2EYI A;  2RR8 A;  2WA5 A;  1UJO A;  1WYM A;  3FER A;  1PA7 A;  1WYR A;  1SH5 A;  1SH6 A;  4EDL A;  3KY9 A;  5BVR A;  4Q59 A;  1WYO A;  1RT8 A;  1MB8 A;  3I6X A;  2L3G A;  2VZD A;  1VKA A;  2YRN A;  2DK9 A;  3JAL M;  2QJX A;  3JAR M;  5J8E A;  2QJZ A;  1DXX A;  1H67 A;  5A36 A;  3HOP A;  1PXY A;  1BHD A;  3HOC A;  1BKR A;  4TXI A;  1TJT A;  2R8U A;  5A4B A;  1WIX A;  2VZI B;  1QAG A;  4EDM A;  1AA2 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WYMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations