1WYQA

Solution structure of the second ch domain of human spectrin beta chain, brain 2
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
127
structure length
127
Chain Sequence
GSSGSSGAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSKMKALAVEGKSGPSSG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH4 (96-112)TIV1 (7-10)AH1 (10-22)EMPTYTIV2 (23-26)TIV7 (35-38)AH2 (40-48)AH3 (63-77)TIV8 (49-52)3H1 (55-57)TIV10 (51-54)TIV11 (59-62)TI1 (85-88)TIV12 (86-89)TIV14 (112-115)Updating...
connected with : NaN
molecule tags Structural protein
source organism Homo sapiens
publication title Solution structure of the second CH domain of human spectrin beta chain, brain 2
rcsb
molecule keywords Spectrin beta chain, brain 2
total genus 20
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 2005-02-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.418.10 Mainly Alpha Orthogonal Bundle Actin-binding Protein, T-fimbrin; domain 1 Calponin-like domain 1wyqA01
1BKRA 3HOCA 1WKUA 5A38A 2EYNA 2L3GA 3I6XA 4TXKA 4B7LA 2R0OA 2VZDA 2K2RA 1UJOA 3F7PA 1V5KA 2D86A 1QAGA 1BHDA 5A36A 2QJXA 1P5SA 2E9KA 1WYRA 3KY9A 3HOPA 1WYLA 3KMUB 2EE7A 1MB8A 1TJTA 2D89A 5A37A 3KMWB 2WA5A 2WA6A 3HORA 2EYIA 2D88A 2JV9A 2YRNA 2D85A 4EDLA 4Q58A 3JARM 1WJOA 1H67A 5BVRA 3REPB 1WYPA 1WYOA 1WIXA 2VZGB 4Q57B 1WYMA 1VKAA 3FERA 2D87A 4Q59A 1SH6A 1WYNA 2VZIB 2RR8A 1AOAA 5J8EA 3JAKM 4EDNA 5L0OA 2K3SA 1DXXA 2QJZA 1PA7A 2VZCA 5A4BA 4EDMA 1P2XA 1RT8A 3CO1A 1AA2A 1UEGA 2R8UA 1SH5A 1WYQA 1PXYA 4TXIA 2WFNA 3JALM 2WA7A 2DK9A
chains in the Genus database with same CATH superfamily
1BKRA 3HOCA 5FMUA 1WKUA 5A38A 2EYNA 2L3GA 3I6XA 4TXKA 4B7LA 2R0OA 2VZDA 2K2RA 1UJOA 3F7PA 1V5KA 2D86A 1QAGA 1BHDA 5A36A 2QJXA 1P5SA 2E9KA 1WYRA 4DDPA 3KY9A 3HOPA 1WYLA 3KMUB 2EE7A 1MB8A 1TJTA 2WE6A 2D89A 5A37A 2IGPA 3KMWB 2HL9A 2WA5A 2WA6A 2EQOA 3HORA 2EYIA 2D88A 2JV9A 2YRNA 2D85A 2VE7C 4EDLA 3EAYA 4Q58A 4LVRA 3JARM 1WJOA 1H67A 5BVRA 3REPB 2WDTA 1WYPA 1WYOA 1WIXA 2VZGB 4Q57B 3VP7A 1WYMA 1VKAA 3FERA 2D87A 4Q59A 1SH6A 1WYNA 2VZIB 2RR8A 1AOAA 2HL8A 5FMTA 5J8EA 3JAKM 4EDNA 5L0OA 1EUVA 2K3SA 1DXXA 2QJZA 1PA7A 2VZCA 5A4BA 4EDMA 1P2XA 1RT8A 4LVPA 3CO1A 1AA2A 1UEGA 2R8UA 1SH5A 1WYQA 1PXYA 4TXIA 2WFNA 3JALM 2HKPA 2WA7A 2DK9A 2VE7A
chains in the Genus database with same CATH topology
1BKRA 3HOCA 1WKUA 5A38A 2EYNA 2L3GA 3I6XA 4TXKA 4B7LA 2R0OA 2VZDA 2K2RA 1UJOA 3F7PA 1V5KA 2D86A 1QAGA 1BHDA 5A36A 2QJXA 1P5SA 2E9KA 1WYRA 3KY9A 3HOPA 1WYLA 3KMUB 2EE7A 1MB8A 1TJTA 2D89A 5A37A 3KMWB 2WA5A 2WA6A 3HORA 2EYIA 2D88A 2JV9A 2YRNA 2D85A 4EDLA 4Q58A 3JARM 1WJOA 1H67A 5BVRA 3REPB 1WYPA 1WYOA 1WIXA 2VZGB 4Q57B 1WYMA 1VKAA 3FERA 2D87A 4Q59A 1SH6A 1WYNA 2VZIB 2RR8A 1AOAA 5J8EA 3JAKM 4EDNA 5L0OA 2K3SA 1DXXA 2QJZA 1PA7A 2VZCA 5A4BA 4EDMA 1P2XA 1RT8A 3CO1A 1AA2A 1UEGA 2R8UA 1SH5A 1WYQA 1PXYA 4TXIA 2WFNA 3JALM 2WA7A 2DK9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BKR A;  3HOC A;  1WKU A;  5A38 A;  2EYN A;  2L3G A;  3I6X A;  4TXK A;  4B7L A;  2R0O A;  2VZD A;  2K2R A;  1UJO A;  3F7P A;  1V5K A;  2D86 A;  1QAG A;  1BHD A;  5A36 A;  2QJX A;  1P5S A;  2E9K A;  1WYR A;  3KY9 A;  3HOP A;  1WYL A;  3KMU B;  2EE7 A;  1MB8 A;  1TJT A;  2D89 A;  5A37 A;  3KMW B;  2WA5 A;  2WA6 A;  3HOR A;  2EYI A;  2D88 A;  2JV9 A;  2YRN A;  2D85 A;  4EDL A;  4Q58 A;  3JAR M;  1WJO A;  1H67 A;  5BVR A;  3REP B;  1WYP A;  1WYO A;  1WIX A;  2VZG B;  4Q57 B;  1WYM A;  1VKA A;  3FER A;  2D87 A;  4Q59 A;  1SH6 A;  1WYN A;  2VZI B;  2RR8 A;  1AOA A;  5J8E A;  3JAK M;  4EDN A;  5L0O A;  2K3S A;  1DXX A;  2QJZ A;  1PA7 A;  2VZC A;  5A4B A;  4EDM A;  1P2X A;  1RT8 A;  3CO1 A;  1AA2 A;  1UEG A;  2R8U A;  1SH5 A;  1WYQ A;  1PXY A;  4TXI A;  2WFN A;  3JAL M;  2WA7 A;  2DK9 A; 
#chains in the Genus database with same CATH topology
 1BKR A;  3HOC A;  5FMU A;  1WKU A;  5A38 A;  2EYN A;  2L3G A;  3I6X A;  4TXK A;  4B7L A;  2R0O A;  2VZD A;  2K2R A;  1UJO A;  3F7P A;  1V5K A;  2D86 A;  1QAG A;  1BHD A;  5A36 A;  2QJX A;  1P5S A;  2E9K A;  1WYR A;  4DDP A;  3KY9 A;  3HOP A;  1WYL A;  3KMU B;  2EE7 A;  1MB8 A;  1TJT A;  2WE6 A;  2D89 A;  5A37 A;  2IGP A;  3KMW B;  2HL9 A;  2WA5 A;  2WA6 A;  2EQO A;  3HOR A;  2EYI A;  2D88 A;  2JV9 A;  2YRN A;  2D85 A;  2VE7 C;  4EDL A;  3EAY A;  4Q58 A;  4LVR A;  3JAR M;  1WJO A;  1H67 A;  5BVR A;  3REP B;  2WDT A;  1WYP A;  1WYO A;  1WIX A;  2VZG B;  4Q57 B;  3VP7 A;  1WYM A;  1VKA A;  3FER A;  2D87 A;  4Q59 A;  1SH6 A;  1WYN A;  2VZI B;  2RR8 A;  1AOA A;  2HL8 A;  5FMT A;  5J8E A;  3JAK M;  4EDN A;  5L0O A;  1EUV A;  2K3S A;  1DXX A;  2QJZ A;  1PA7 A;  2VZC A;  5A4B A;  4EDM A;  1P2X A;  1RT8 A;  4LVP A;  3CO1 A;  1AA2 A;  1UEG A;  2R8U A;  1SH5 A;  1WYQ A;  1PXY A;  4TXI A;  2WFN A;  3JAL M;  2HKP A;  2WA7 A;  2DK9 A;  2VE7 A; 
#chains in the Genus database with same CATH homology
 1BKR A;  3HOC A;  1WKU A;  5A38 A;  2EYN A;  2L3G A;  3I6X A;  4TXK A;  4B7L A;  2R0O A;  2VZD A;  2K2R A;  1UJO A;  3F7P A;  1V5K A;  2D86 A;  1QAG A;  1BHD A;  5A36 A;  2QJX A;  1P5S A;  2E9K A;  1WYR A;  3KY9 A;  3HOP A;  1WYL A;  3KMU B;  2EE7 A;  1MB8 A;  1TJT A;  2D89 A;  5A37 A;  3KMW B;  2WA5 A;  2WA6 A;  3HOR A;  2EYI A;  2D88 A;  2JV9 A;  2YRN A;  2D85 A;  4EDL A;  4Q58 A;  3JAR M;  1WJO A;  1H67 A;  5BVR A;  3REP B;  1WYP A;  1WYO A;  1WIX A;  2VZG B;  4Q57 B;  1WYM A;  1VKA A;  3FER A;  2D87 A;  4Q59 A;  1SH6 A;  1WYN A;  2VZI B;  2RR8 A;  1AOA A;  5J8E A;  3JAK M;  4EDN A;  5L0O A;  2K3S A;  1DXX A;  2QJZ A;  1PA7 A;  2VZC A;  5A4B A;  4EDM A;  1P2X A;  1RT8 A;  3CO1 A;  1AA2 A;  1UEG A;  2R8U A;  1SH5 A;  1WYQ A;  1PXY A;  4TXI A;  2WFN A;  3JAL M;  2WA7 A;  2DK9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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